pycom12g17910

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0006132
Physical Location & Seq
Forward (+)
20241922 .. 20242855
934 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g17910.2

Sequence Viewer

Length: 294 bp
ATGGTGGGTTTAAGGTCGATCATGCTCACAGGAAGAGATGAAGAAACCCTAGGCCAAATTACTGCCGCAAACTTGCATAACCAGGGATTTGTTGGTTACGAACGGCTAATTTTGAGGACTCCAGCTTACAAGGGGCAGAGCGCAGTTGTGTACAAATCAAACATTCGGAAGCAATTGGTAGAAAAAGGTTACAGAATTTGGGGAAATATAGGAGACCAATGGTCCGATCTTCAAGGAGACTGTGTTGGCAACCGCACTTATAAGCTTCCAAACCCCATGTACTTTGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

98

Amino Acids

11.01

Weight (kDa)

9.41

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AciI CCGC 2 cut(s) 66, 253
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 2 cut(s) 152, 281
AgsI TTSAA 1 cut(s) 233
AhdI GACNNNNNGTC 1 cut(s) 220
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 2 cut(s) 125, 265
AluI AGCT 2 cut(s) 125, 265
Alw26I GTCTC 2 cut(s) 207, 231
AoxI GGCC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 195
AspA2I CCTAGG 1 cut(s) 49
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 222
AvaII GGWCC 1 cut(s) 222
AvrII CCTAGG 1 cut(s) 49
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 207, 231
BfaI CTAG 1 cut(s) 50
BisI GCNGC 1 cut(s) 66
BlnI CCTAGG 1 cut(s) 49
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 222
BmeRI GACNNNNNGTC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 49, 82
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 49, 82
BshFI GGCC 1 cut(s) 54
BsmAI GTCTC 2 cut(s) 207, 231
BsnI GGCC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 207
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 2 cut(s) 18, 226
BspACI CCGC 2 cut(s) 66, 253
BspANI GGCC 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 207
BsrGI TGTACA 1 cut(s) 150
BssECI CCNNGG 2 cut(s) 49, 82
BssMI GATC 2 cut(s) 18, 226
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 28
BstAUI TGTACA 1 cut(s) 150
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 2 cut(s) 21, 229
BstMAI GTCTC 2 cut(s) 207, 231
BstMBI GATC 2 cut(s) 18, 226
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BsuRI GGCC 1 cut(s) 54
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 151, 280
CviAII CATG 2 cut(s) 22, 277
CviJI RGCY 4 cut(s) 54, 106, 125, 265
CviKI_1 RGCY 4 cut(s) 54, 106, 125, 265
CviQI GTAC 2 cut(s) 151, 280
DpnI GATC 2 cut(s) 20, 228
DpnII GATC 2 cut(s) 18, 226
DriI GACNNNNNGTC 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 28
Eam1105I GACNNNNNGTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 2 cut(s) 25, 280
FaiI YATR 5 cut(s) 23, 78, 209, 261, 278
FatI CATG 2 cut(s) 21, 276
Fnu4HI GCNGC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 54
HhaI GCGC 1 cut(s) 143
Hin1II CATG 2 cut(s) 25, 280
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 168, 226
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 1 cut(s) 76
Hsp92II CATG 2 cut(s) 25, 280
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 2 cut(s) 18, 226
LpnPI CCDG 4 cut(s) 15, 68, 95, 135
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 95, 188
MalI GATC 2 cut(s) 20, 228
MboI GATC 2 cut(s) 18, 226
MboII GAAGA 3 cut(s) 45, 53, 221
MfeI CAATTG 1 cut(s) 173
MluCI AATT 4 cut(s) 57, 108, 173, 195
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 1 cut(s) 108
MseI TTAA 2 cut(s) 11, 292
MspR9I CCNGG 1 cut(s) 83
MunI CAATTG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 83
NdeII GATC 2 cut(s) 18, 226
NlaIII CATG 2 cut(s) 25, 280
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PsiI TTATAA 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspPI GGNCC 1 cut(s) 222
RsaI GTAC 2 cut(s) 152, 281
RsaNI GTAC 2 cut(s) 151, 280
SaqAI TTAA 2 cut(s) 11, 292
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 18, 226
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 83
SetI ASST 4 cut(s) 17, 127, 190, 267
SinI GGWCC 1 cut(s) 222
Sse9I AATT 4 cut(s) 57, 108, 173, 195
SsiI CCGC 2 cut(s) 66, 253
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 17
TasI AATT 4 cut(s) 57, 108, 173, 195
TatI WGTACW 2 cut(s) 150, 279
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 11, 292
Tru9I TTAA 2 cut(s) 11, 292
TspDTI ATGAA 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XmaJI CCTAGG 1 cut(s) 49
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.