Rh3CG103100

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0006132
Physical Location & Seq
Reverse (-)
8185834 .. 8188664
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG103100.1

Sequence Viewer

Length: 594 bp
ATGATTAAAGCAATGATGAAACGAACCCAGGAGGTGTTGTTTTTTCTGATTCTGGCTTTGTTCTACAAGGCCACCGGCATGAAGCCTTGCTCTAAGCCCCCGCAAGTCGACTGTGACGGCTTCTGTTTGAGCTGGAGACTGGCGGTGGAGGCCAACAATGTGCGTGGGTGGCGCACCGTGCCAACCCAGTGCTTGCACTATCTCGAAACATACATGATTGGAGGACAGTACGACCGCGACATAGAATTCATTGTTGGTGAAATTATGAGTTACGTAAACGGAATCGTTCCCTCGGATGATGGCATGGATGCATGGATCTTGGATGTGGACGACACTTGCATATCCAATGTCTTATACTACAAGGGAAAGAGATACGGGTGTGACCCTTACGATCCATCGGGGTTCCGAGCATGGGCTATGTCTGGAAAGTGTCCGGCAATTCCTGCTATGCTGAGATTGTTTAGCAACCTGGTGAATATGGGGTTTAAGGTTATTTTGCTTACTGGAAGGGATGAAGAAACACTTGGTCAAGTCACTATCGAAAACCTGAATAATCAAGGATTTGTTGATTATGAACGGTTGATTTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

197

Amino Acids

22.44

Weight (kDa)

5.23

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 37 - 197 1.2e-47 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 237
AciI CCGC 3 cut(s) 101, 143, 235
AclWI GGATC 2 cut(s) 323, 386
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 412
AjnI CCWGG 2 cut(s) 27, 468
AjuI GAANNNNNNNTTGG 4 cut(s) 237, 269, 507, 539
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 2 cut(s) 323, 386
AoxI GGCC 2 cut(s) 69, 150
ApoI RAATTY 1 cut(s) 245
AspLEI GCGC 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 269, 484
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BccI CCATC 2 cut(s) 293, 403
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 2 cut(s) 29, 470
BcoDI GTCTC 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 29, 470
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 2 cut(s) 29, 470
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 298
BmuI ACTGGG 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 274
BsaJI CCNNGG 2 cut(s) 27, 291
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 3 cut(s) 144, 187, 508
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 29, 470
BseDI CCNNGG 2 cut(s) 27, 291
BseGI GGATG 4 cut(s) 301, 313, 328, 517
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 3 cut(s) 144, 187, 508
Bsh1236I CGCG 1 cut(s) 237
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 2 cut(s) 71, 152
BsiEI CGRYCG 1 cut(s) 235
BsiSI CCGG 2 cut(s) 75, 434
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 130
BsnI GGCC 2 cut(s) 71, 152
Bsp143I GATC 2 cut(s) 315, 391
BspACI CCGC 3 cut(s) 101, 143, 235
BspANI GGCC 2 cut(s) 71, 152
BspCNI CTCAG 1 cut(s) 444
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 404
BspPI GGATC 2 cut(s) 323, 386
BsrDI GCAATG 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 3 cut(s) 144, 187, 508
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 27, 291
BssMI GATC 2 cut(s) 315, 391
Bst2UI CCWGG 2 cut(s) 29, 470
Bst4CI ACNGT 4 cut(s) 113, 178, 228, 579
BstAPI GCANNNNNTGC 1 cut(s) 443
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 93, 452
BstF5I GGATG 4 cut(s) 301, 313, 328, 517
BstFNI CGCG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 318, 394
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 2 cut(s) 315, 391
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 149, 169, 178, 443
BstNI CCWGG 2 cut(s) 29, 470
BstSCI CCNGG 2 cut(s) 27, 468
BstSNI TACGTA 1 cut(s) 274
BstUI CGCG 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuRI GGCC 2 cut(s) 71, 152
BtsCI GGATG 4 cut(s) 301, 313, 328, 517
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 1 cut(s) 174
Cfr10I RCCGGY 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 468
Csp6I GTAC 1 cut(s) 229
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 5 cut(s) 79, 214, 304, 312, 411
CviJI RGCY 8 cut(s) 56, 71, 85, 97, 120, 132, 152, 416
CviKI_1 RGCY 8 cut(s) 56, 71, 85, 97, 120, 132, 152, 416
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 2 cut(s) 93, 452
DpnI GATC 2 cut(s) 317, 393
DpnII GATC 2 cut(s) 315, 391
Eco105I TACGTA 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 2 cut(s) 27, 468
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 5 cut(s) 82, 217, 307, 315, 414
FalI AAGNNNNNCTT 2 cut(s) 507, 539
FatI CATG 5 cut(s) 78, 213, 303, 311, 410
FauI CCCGC 1 cut(s) 108
FblI GTMKAC 1 cut(s) 108
FokI GGATG 4 cut(s) 308, 320, 335, 524
GlaI GCGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 154
HaeIII GGCC 2 cut(s) 71, 152
HapII CCGG 2 cut(s) 75, 434
HhaI GCGC 1 cut(s) 174
Hin1II CATG 5 cut(s) 82, 217, 307, 315, 414
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 2 cut(s) 49, 282
HpaII CCGG 2 cut(s) 75, 434
HphI GGTGA 2 cut(s) 269, 484
Hpy166II GTNNAC 3 cut(s) 109, 277, 328
Hpy188I TCNGA 3 cut(s) 48, 295, 407
Hpy188III TCNNGA 2 cut(s) 203, 423
Hpy8I GTNNAC 3 cut(s) 109, 277, 328
HpyAV CCTTC 1 cut(s) 501
HpyCH4III ACNGT 4 cut(s) 113, 178, 228, 579
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 3 cut(s) 196, 311, 339
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 169, 178, 443
HpyF3I CTNAG 2 cut(s) 93, 452
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 5 cut(s) 82, 217, 307, 315, 414
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 315, 391
LweI GCATC 1 cut(s) 298
MabI ACCWGGT 1 cut(s) 468
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 4 cut(s) 113, 269, 380, 532
MalI GATC 2 cut(s) 317, 393
MboI GATC 2 cut(s) 315, 391
MboII GAAGA 1 cut(s) 527
MflI RGATCY 1 cut(s) 315
MluCI AATT 3 cut(s) 245, 261, 438
MnlI CCTC 5 cut(s) 25, 142, 215, 301, 582
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 2 cut(s) 6, 486
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 2 cut(s) 75, 434
MspR9I CCNGG 2 cut(s) 29, 470
MvaI CCWGG 2 cut(s) 29, 470
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 4 cut(s) 149, 169, 178, 443
NdeII GATC 2 cut(s) 315, 391
NlaIII CATG 5 cut(s) 82, 217, 307, 315, 414
NlaIV GGNNCC 1 cut(s) 404
NmuCI GTSAC 3 cut(s) 113, 380, 532
NsiI ATGCAT 1 cut(s) 313
PfeI GAWTC 2 cut(s) 49, 282
Ppu21I YACGTR 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 27, 468
PspGI CCWGG 2 cut(s) 27, 468
PspN4I GGNNCC 1 cut(s) 404
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 77
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 6, 486
Sau3AI GATC 2 cut(s) 315, 391
ScrFI CCNGG 2 cut(s) 29, 470
SetI ASST 7 cut(s) 36, 134, 276, 471, 492, 549, 593
SexAI ACCWGGT 1 cut(s) 468
SfaNI GCATC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 77
SnaBI TACGTA 1 cut(s) 274
Sse9I AATT 3 cut(s) 245, 261, 438
SsiI CCGC 3 cut(s) 101, 143, 235
StyD4I CCNGG 2 cut(s) 27, 468
TaaI ACNGT 4 cut(s) 113, 178, 228, 579
TaiI ACGT 1 cut(s) 276
TaqI TCGA 3 cut(s) 108, 204, 540
TasI AATT 3 cut(s) 245, 261, 438
TfiI GAWTC 2 cut(s) 49, 282
Tru1I TTAA 2 cut(s) 6, 486
Tru9I TTAA 2 cut(s) 6, 486
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 3 cut(s) 113, 380, 532
Tsp45I GTSAC 3 cut(s) 113, 380, 532
TspDTI ATGAA 5 cut(s) 32, 95, 238, 528, 588
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 1 cut(s) 194
XapI RAATTY 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.