Rorug03G0039500

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006132
Physical Location & Seq
Reverse (-)
3074044 .. 3075432
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0039500.1

Sequence Viewer

Length: 1389 bp
ATGAGTAGTGACCGAAAAACCTTGCACATTGCCATGTATCCATGGTTTGCTATGGGGCATTTGTCCCCATTTCTCCACATCTCTAACAAACTAGCCGAGAGAGGCCATAGAATCTCCTTCTTCCTACCCCAAAAAACACAAGCCAAGTTGGAGCATTACAATCTCCACCCTGATCTCATCACCTTCTTCCCCCTCACCATCCCTCACGTCGAGGGCCTTCCCGAGGGGGCGGAGACCACTGCCGACGTTCCTTTTCCTCTCCACACCCACGTCGTCACCGCCATGGACCTCACTCGCCCCCAAATTGAGAAATTTCTCCGAGAACTCAAACCGAATTTGGTCTTCTACGATTTCACTCATTGGTTGCCCCAACTGTTGCGTGAGCTGGACGGCAACATGAAGTCAGTCCACTACTGCATTATTAGCCCCGTGACAATAGGGTACCTTCTAAGCCCGGAGAGGAAGCTAACCGAAAAACCGTTGGTGGCAACTGATCTTCTAGAGGCTCCTACGTCATTTCCTTCTTCATCCATCAAGTTGCGGACACATGAAGCTCGAGGACTAACCTATGTGACAAACCTGGAATACGGGCGTGGGATAACATTTCTTCAACGCCAACTGACCGCTTTGGCCGAATGTGATGCCATTGGTTTCAAGACATGTAAAGAATTCGAAGGGAAGTTTTGTGATTACCTAGAAGTGCAGATGAAGAAGCCAGTGATTCTCGCAGGGCCGGTGGTGCCGGCCCCTCCAAGCTCGGCGTTGGAAGAGAAATGGGCAGAGTGGCTCGGAGGGTTTGAGCCAAGAAGTGTGATTTTTTGTGCTTTCGGAAGTGAATGCGTGCTGAAGAAGGAACAGTTGCAAGAACTGGTGTTAGGATTCGAGCTCACGGGTCTCCCGTTCTTCACAGCATTGAAAACGCCTGAGGGATTCGAGTCCATCGAAGCTGCATTGCCCGAAGGGTTCGAAGACAGGGTGAAAGGGAGAGGTGTTGTTTACAGTGGCTGGGTGCAACAGCCGTTGATACTGAAGCACCCATCTGTAGGGTGCTTTGTGACTCACTGTGGTTCGGGGTCTCTAGCCGAGGCGATGATGAACCATTGCCGGTTGGTGCTTCTACCGCACGTCGGAGACCAGATCATTAATGCGAGAATGATGGGAGGCGATCTGAGAGTGGGAGTTGAAGTCGAGAAGGGAGACGAAGATGGCTTGTTTAGCAAGGAAGGTGTTTGCAAAGCTATGGAGGTTGTGGTGGATGATGAGAGTGAGGTAGGGAAAGAAGTGAAGGCTAACCATGCTAAGTGGAGGGAGTTCTTCTCCAACAAAGGGCTTGAGAAAACGTACATTGATGGCTTTGAGCAGAGGCTGCATCAACTGATAGAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

462

Amino Acids

51.94

Weight (kDa)

5.86

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 335 - 422 3.3e-11 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 441
AccB1I GGYRCC 2 cut(s) 441, 739
AciI CCGC 5 cut(s) 230, 279, 541, 624, 1121
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 3 cut(s) 311, 334, 668
AcuI CTGAAG 2 cut(s) 866, 1049
AfaI GTAC 2 cut(s) 443, 1343
AfiI CCNNNNNNNGG 4 cut(s) 223, 1043, 1127, 1326
AflIII ACRYGT 1 cut(s) 659
AgsI TTSAA 4 cut(s) 611, 655, 916, 1184
AjiI CACGTC 3 cut(s) 208, 271, 1126
AjnI CCWGG 1 cut(s) 579
AluBI AGCT 7 cut(s) 385, 466, 554, 756, 886, 947, 1238
AluI AGCT 7 cut(s) 385, 466, 554, 756, 886, 947, 1238
Alw21I GWGCWC 1 cut(s) 888
Alw26I GTCTC 5 cut(s) 227, 899, 1080, 1125, 1191
AlwNI CAGNNNCTG 2 cut(s) 1005, 1366
Ama87I CYCGRG 2 cut(s) 221, 555
AoxI GGCC 5 cut(s) 103, 214, 630, 731, 744
ApeKI GCWGC 2 cut(s) 947, 1366
ApoI RAATTY 3 cut(s) 311, 334, 668
AseI ATTAAT 1 cut(s) 1143
Asp718I GGTACC 1 cut(s) 441
AspS9I GGNCC 4 cut(s) 214, 286, 731, 745
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 4 cut(s) 172, 187, 268, 988
AsuII TTCGAA 2 cut(s) 672, 966
AvaI CYCGRG 2 cut(s) 221, 555
AvaII GGWCC 1 cut(s) 286
AxyI CCTNAGG 1 cut(s) 924
BanI GGYRCC 2 cut(s) 441, 739
BanII GRGCYC 1 cut(s) 888
BbsI GAAGAC 2 cut(s) 334, 975
Bbv12I GWGCWC 1 cut(s) 888
BbvI GCAGC 2 cut(s) 934, 1353
BccI CCATC 7 cut(s) 206, 539, 947, 1045, 1150, 1199, 1343
BceAI ACGGC 2 cut(s) 406, 1003
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 1 cut(s) 581
BciVI GTATCC 1 cut(s) 48
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 5 cut(s) 227, 899, 1080, 1125, 1191
BfaI CTAG 4 cut(s) 92, 500, 695, 1079
BfmI CTRYAG 1 cut(s) 1041
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 2 cut(s) 948, 1367
BlsI GCNGC 2 cut(s) 949, 1368
Bme1390I CCNGG 2 cut(s) 455, 581
Bme18I GGWCC 1 cut(s) 286
BmeT110I CYCGRG 2 cut(s) 221, 555
BmgBI CACGTC 3 cut(s) 208, 271, 1126
BmgT120I GGNCC 4 cut(s) 214, 286, 731, 745
BmiI GGNNCC 4 cut(s) 443, 507, 741, 747
BmrFI CCNGG 2 cut(s) 455, 581
BmsI GCATC 2 cut(s) 631, 1378
BpiI GAAGAC 2 cut(s) 334, 975
BplI GAGNNNNNCTC 2 cut(s) 1301, 1333
Bpu14I TTCGAA 2 cut(s) 672, 966
BpuEI CTTGAG 1 cut(s) 1352
BpuMI CCSGG 1 cut(s) 455
BsaI GGTCTC 4 cut(s) 227, 899, 1080, 1125
BsaJI CCNNGG 4 cut(s) 41, 222, 282, 1083
BsaXI ACNNNNNCTCC 2 cut(s) 1170, 1200
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 1043, 1127, 1326
Bse118I RCCGGY 3 cut(s) 733, 742, 1104
Bse1I ACTGG 2 cut(s) 716, 873
Bse21I CCTNAGG 1 cut(s) 924
Bse3DI GCAATG 3 cut(s) 27, 950, 1099
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 4 cut(s) 41, 222, 282, 1083
BseGI GGATG 3 cut(s) 198, 527, 1261
BseLI CCNNNNNNNGG 4 cut(s) 223, 1043, 1127, 1326
BseMI GCAATG 3 cut(s) 27, 950, 1099
BseMII CTCAG 2 cut(s) 915, 1160
BseNI ACTGG 2 cut(s) 716, 873
BseXI GCAGC 2 cut(s) 934, 1353
BseYI CCCAGC 1 cut(s) 1005
BsgI GTGCAG 1 cut(s) 722
BshFI GGCC 5 cut(s) 105, 216, 632, 733, 746
BshNI GGYRCC 2 cut(s) 441, 739
BsiHKAI GWGCWC 1 cut(s) 888
BsiHKCI CYCGRG 2 cut(s) 221, 555
BsiSI CCGG 4 cut(s) 455, 734, 743, 1105
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 4 cut(s) 223, 1043, 1127, 1326
BsmAI GTCTC 5 cut(s) 227, 899, 1080, 1125, 1191
BsmBI CGTCTC 1 cut(s) 1191
BsmFI GGGAC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 842
BsnI GGCC 5 cut(s) 105, 216, 632, 733, 746
Bso31I GGTCTC 4 cut(s) 227, 899, 1080, 1125
BsoBI CYCGRG 2 cut(s) 221, 555
Bsp119I TTCGAA 2 cut(s) 672, 966
Bsp1286I GDGCHC 1 cut(s) 888
Bsp143I GATC 4 cut(s) 172, 493, 1137, 1165
Bsp19I CCATGG 2 cut(s) 41, 282
BspACI CCGC 5 cut(s) 230, 279, 541, 624, 1121
BspANI GGCC 5 cut(s) 105, 216, 632, 733, 746
BspCNI CTCAG 2 cut(s) 916, 1161
BspLI GGNNCC 4 cut(s) 443, 507, 741, 747
BspT104I TTCGAA 2 cut(s) 672, 966
BspT107I GGYRCC 2 cut(s) 441, 739
BspTNI GGTCTC 4 cut(s) 227, 899, 1080, 1125
BsrDI GCAATG 3 cut(s) 27, 950, 1099
BsrFI RCCGGY 3 cut(s) 733, 742, 1104
BsrI ACTGG 2 cut(s) 716, 873
BssAI RCCGGY 3 cut(s) 733, 742, 1104
BssECI CCNNGG 4 cut(s) 41, 222, 282, 1083
BssMI GATC 4 cut(s) 172, 493, 1137, 1165
BssT1I CCWWGG 2 cut(s) 41, 282
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 5 cut(s) 375, 480, 858, 1001, 1064
Bst6I CTCTTC 1 cut(s) 762
BstAPI GCANNNNNTGC 1 cut(s) 1366
BstBI TTCGAA 2 cut(s) 672, 966
BstC8I GCNNGC 2 cut(s) 744, 842
BstDEI CTNAG 4 cut(s) 449, 924, 1169, 1299
BstDSI CCRYGG 2 cut(s) 41, 282
BstENI CCTNNNNNAGG 1 cut(s) 221
BstF5I GGATG 3 cut(s) 198, 527, 1261
BstKTI GATC 4 cut(s) 175, 496, 1140, 1168
BstMAI GTCTC 5 cut(s) 227, 899, 1080, 1125, 1191
BstMBI GATC 4 cut(s) 172, 493, 1137, 1165
BstMWI GCNNNNNNNGC 6 cut(s) 423, 739, 1120, 1215, 1295, 1366
BstNI CCWGG 1 cut(s) 581
BstNSI RCATGY 1 cut(s) 663
BstSCI CCNGG 2 cut(s) 453, 579
BstSFI CTRYAG 1 cut(s) 1041
BstV1I GCAGC 2 cut(s) 934, 1353
BstV2I GAAGAC 2 cut(s) 334, 975
Bsu36I CCTNAGG 1 cut(s) 924
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 5 cut(s) 105, 216, 632, 733, 746
BtgI CCRYGG 2 cut(s) 41, 282
BtgZI GCGATG 1 cut(s) 1103
BtrI CACGTC 3 cut(s) 208, 271, 1126
BtsCI GGATG 3 cut(s) 198, 527, 1261
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 4 cut(s) 237, 723, 1006, 1060
Cac8I GCNNGC 2 cut(s) 744, 842
CaiI CAGNNNCTG 2 cut(s) 1005, 1366
Cfr10I RCCGGY 3 cut(s) 733, 742, 1104
Cfr13I GGNCC 4 cut(s) 214, 286, 731, 745
Csp6I GTAC 2 cut(s) 442, 1342
CviAII CATG 7 cut(s) 34, 42, 283, 397, 548, 660, 1295
CviQI GTAC 2 cut(s) 442, 1342
DdeI CTNAG 4 cut(s) 449, 924, 1169, 1299
DpnI GATC 4 cut(s) 174, 495, 1139, 1167
DpnII GATC 4 cut(s) 172, 493, 1137, 1165
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 1 cut(s) 762
EarI CTCTTC 1 cut(s) 762
EciI GGCGGA 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 886
Eco130I CCWWGG 2 cut(s) 41, 282
Eco24I GRGCYC 1 cut(s) 888
Eco31I GGTCTC 4 cut(s) 227, 899, 1080, 1125
Eco47I GGWCC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 886
Eco57I CTGAAG 2 cut(s) 866, 1049
Eco81I CCTNAGG 1 cut(s) 924
Eco88I CYCGRG 2 cut(s) 221, 555
EcoICRI GAGCTC 1 cut(s) 886
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 579
EcoT14I CCWWGG 2 cut(s) 41, 282
EcoT38I GRGCYC 1 cut(s) 888
ErhI CCWWGG 2 cut(s) 41, 282
Esp3I CGTCTC 1 cut(s) 1191
FaeI CATG 7 cut(s) 37, 45, 286, 400, 551, 663, 1298
FaqI GGGAC 1 cut(s) 49
FatI CATG 7 cut(s) 33, 41, 282, 396, 547, 659, 1294
Fnu4HI GCNGC 2 cut(s) 948, 1367
FokI GGATG 3 cut(s) 185, 514, 1268
FriOI GRGCYC 1 cut(s) 888
Fsp4HI GCNGC 2 cut(s) 948, 1367
FspBI CTAG 4 cut(s) 92, 500, 695, 1079
GluI GCNGC 2 cut(s) 948, 1367
GsaI CCCAGC 1 cut(s) 1009
HaeIII GGCC 5 cut(s) 105, 216, 632, 733, 746
HapII CCGG 4 cut(s) 455, 734, 743, 1105
Hin1II CATG 7 cut(s) 37, 45, 286, 400, 551, 663, 1298
HinfI GANTC 6 cut(s) 111, 721, 879, 930, 935, 1057
HpaII CCGG 4 cut(s) 455, 734, 743, 1105
HphI GGTGA 4 cut(s) 172, 187, 268, 988
Hpy166II GTNNAC 2 cut(s) 409, 997
Hpy188I TCNGA 5 cut(s) 320, 791, 830, 1130, 1170
Hpy188III TCNNGA 4 cut(s) 221, 500, 655, 1189
Hpy8I GTNNAC 2 cut(s) 409, 997
Hpy99I CGWCG 4 cut(s) 212, 248, 275, 1130
HpyCH4III ACNGT 5 cut(s) 375, 480, 858, 1001, 1064
HpyCH4IV ACGT 6 cut(s) 207, 246, 270, 512, 1125, 1340
HpyCH4V TGCA 8 cut(s) 25, 417, 703, 862, 950, 1012, 1233, 1369
HpyF10VI GCNNNNNNNGC 6 cut(s) 423, 739, 1120, 1215, 1295, 1366
HpyF3I CTNAG 4 cut(s) 449, 924, 1169, 1299
HpySE526I ACGT 6 cut(s) 207, 246, 270, 512, 1125, 1340
Hsp92II CATG 7 cut(s) 37, 45, 286, 400, 551, 663, 1298
KpnI GGTACC 1 cut(s) 445
KroI GCCGGC 1 cut(s) 742
KroNI GCCGGC 1 cut(s) 744
Kzo9I GATC 4 cut(s) 172, 493, 1137, 1165
LmnI GCTCC 2 cut(s) 151, 511
Lsp1109I GCAGC 2 cut(s) 934, 1353
LweI GCATC 2 cut(s) 631, 1378
MaeI CTAG 4 cut(s) 92, 500, 695, 1079
MaeII ACGT 6 cut(s) 207, 246, 270, 512, 1125, 1340
MaeIII GTNAC 5 cut(s) 8, 274, 430, 571, 1054
MalI GATC 4 cut(s) 174, 495, 1139, 1167
MboI GATC 4 cut(s) 172, 493, 1137, 1165
MhlI GDGCHC 1 cut(s) 888
MluCI AATT 4 cut(s) 303, 311, 334, 668
MlyI GAGTC 2 cut(s) 944, 1051
MmeI TCCRAC 4 cut(s) 129, 744, 1108, 1344
MroNI GCCGGC 1 cut(s) 742
MseI TTAA 2 cut(s) 1143, 1387
MslI CAYNNNNRTG 2 cut(s) 32, 281
MspI CCGG 4 cut(s) 455, 734, 743, 1105
MspR9I CCNGG 2 cut(s) 455, 581
Mva1269I GAATGC 1 cut(s) 842
MvaI CCWGG 1 cut(s) 581
MwoI GCNNNNNNNGC 6 cut(s) 423, 739, 1120, 1215, 1295, 1366
NaeI GCCGGC 1 cut(s) 744
NciI CCSGG 1 cut(s) 455
NcoI CCATGG 2 cut(s) 41, 282
NdeII GATC 4 cut(s) 172, 493, 1137, 1165
NgoMIV GCCGGC 1 cut(s) 742
NlaIII CATG 7 cut(s) 37, 45, 286, 400, 551, 663, 1298
NlaIV GGNNCC 4 cut(s) 443, 507, 741, 747
NmeAIII GCCGAG 3 cut(s) 121, 737, 1108
NmuCI GTSAC 5 cut(s) 8, 274, 430, 571, 1054
NspI RCATGY 1 cut(s) 663
NspV TTCGAA 2 cut(s) 672, 966
PaeR7I CTCGAG 1 cut(s) 555
PciI ACATGT 1 cut(s) 659
PcsI WCGNNNNNNNCGW 2 cut(s) 896, 939
PctI GAATGC 1 cut(s) 842
PdiI GCCGGC 1 cut(s) 744
PfeI GAWTC 4 cut(s) 111, 721, 879, 930
PkrI GCNGC 2 cut(s) 949, 1368
PleI GAGTC 2 cut(s) 943, 1051
PpsI GAGTC 2 cut(s) 943, 1051
PscI ACATGT 1 cut(s) 659
PshBI ATTAAT 1 cut(s) 1143
Psp124BI GAGCTC 1 cut(s) 888
Psp6I CCWGG 1 cut(s) 579
PspFI CCCAGC 1 cut(s) 1005
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 4 cut(s) 443, 507, 741, 747
PspPI GGNCC 4 cut(s) 214, 286, 731, 745
PspXI VCTCGAGB 1 cut(s) 555
PstNI CAGNNNCTG 2 cut(s) 1005, 1366
RsaI GTAC 2 cut(s) 443, 1343
RsaNI GTAC 2 cut(s) 442, 1342
RseI CAYNNNNRTG 2 cut(s) 32, 281
SacI GAGCTC 1 cut(s) 888
SaqAI TTAA 2 cut(s) 1143, 1387
SatI GCNGC 2 cut(s) 948, 1367
Sau3AI GATC 4 cut(s) 172, 493, 1137, 1165
Sau96I GGNCC 4 cut(s) 214, 286, 731, 745
SchI GAGTC 2 cut(s) 944, 1051
ScrFI CCNGG 2 cut(s) 455, 581
SduI GDGCHC 1 cut(s) 888
SfaNI GCATC 2 cut(s) 631, 1378
SfcI CTRYAG 1 cut(s) 1041
Sfr274I CTCGAG 1 cut(s) 555
SfuI TTCGAA 2 cut(s) 672, 966
SinI GGWCC 1 cut(s) 286
SlaI CTCGAG 1 cut(s) 555
SmiMI CAYNNNNRTG 2 cut(s) 32, 281
SmlI CTYRAG 2 cut(s) 555, 1331
SmoI CTYRAG 2 cut(s) 555, 1331
Sse9I AATT 4 cut(s) 303, 311, 334, 668
SsiI CCGC 5 cut(s) 230, 279, 541, 624, 1121
SspMI CTAG 4 cut(s) 92, 500, 695, 1079
SstI GAGCTC 1 cut(s) 888
StyD4I CCNGG 2 cut(s) 453, 579
StyI CCWWGG 2 cut(s) 41, 282
TaaI ACNGT 5 cut(s) 375, 480, 858, 1001, 1064
TaiI ACGT 6 cut(s) 210, 249, 273, 515, 1128, 1343
TaqI TCGA 8 cut(s) 210, 556, 672, 882, 933, 942, 966, 1188
TaqII GACCGA 1 cut(s) 27
TasI AATT 4 cut(s) 303, 311, 334, 668
TfiI GAWTC 4 cut(s) 111, 721, 879, 930
Tru1I TTAA 2 cut(s) 1143, 1387
Tru9I TTAA 2 cut(s) 1143, 1387
TscAI CASTG 4 cut(s) 244, 723, 1006, 1067
TseFI GTSAC 5 cut(s) 8, 274, 430, 571, 1054
TseI GCWGC 2 cut(s) 947, 1366
Tsp45I GTSAC 5 cut(s) 8, 274, 430, 571, 1054
TspDTI ATGAA 5 cut(s) 413, 516, 564, 722, 1109
TspRI CASTG 4 cut(s) 244, 723, 1006, 1067
VpaK11BI GGWCC 1 cut(s) 286
VspI ATTAAT 1 cut(s) 1143
XagI CCTNNNNNAGG 1 cut(s) 221
XapI RAATTY 3 cut(s) 311, 334, 668
XbaI TCTAGA 1 cut(s) 499
XceI RCATGY 1 cut(s) 663
XhoI CTCGAG 1 cut(s) 555
XspI CTAG 4 cut(s) 92, 500, 695, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.