AT2G38600

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006132
Physical Location & Seq
Forward (+)
16145630 .. 16147144
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38600.1

Sequence Viewer

Length: 756 bp
ATGGAAAAGTGTAGTAGAGAGACGTTGCTTTTCATTTTTATAACAATATCATCAGTGGCAACCAGTACAAGTACATGGATGCCGATGGATGGAAATTATGGTGCTAGCTATTGCTTAAGCTGGAGACTAGCAGTAGAGACCAACAATGTACGTGCGTGGCGCATTGTTCCTCTGCAGTGTCTGCGTTACGTTGAGGTATATATGCTTGCTGGTCAGTATGACAGAGACGTCCAGTTGACTGTGGACCAAATCAAAGTTTATCTCAATGAGATTATCCTTCCTGGTGATGGCATGGACGCATGGATCTTGGATGTTGATGATACTTGCTTCTCAAACGTCTTTTACTATCGGCTTAAGAGATATGGATGTGACCCTTATGATCCAACTGGATTTAGAACATGGGCGATGAAAGGAGAGTCTCCAGCAATACAACCTGTTCTTGAATTGTTCTATAAACTGATAGAAACAGGCTTCAAAGTTTTCCTAGTAACCGGAAGAGACGAAGAGACCCTTCGCCAGGCAACACTAGAGAATTTGCATAACCAAGGATTCACTGGTTATGAAAGGCTGATTATGAGGACAGCGGATAACAAAAGACAAAGCGCAACAACATACAAAACAAGAATCAGAAAGGAGATGATGGAAGAAGGTTACAGGATATGGGGAAATGTAGGCGACCAATGGAGTGACTTACAAGGAGAATATTCAGGGGATCGTACCTTCAAGATTCCTAATCCTATGTACTTCGTTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

251

Amino Acids

29.28

Weight (kDa)

5.25

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 23 - 250 1.1e-84 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 41
AasI GACNNNNNNGTC 1 cut(s) 227
AatII GACGTC 1 cut(s) 231
AciI CCGC 1 cut(s) 584
AclWI GGATC 3 cut(s) 311, 374, 720
AcsI RAATTY 1 cut(s) 532
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 5 cut(s) 67, 73, 150, 718, 743
AfiI CCNNNNNNNGG 3 cut(s) 89, 287, 517
AflII CTTAAG 2 cut(s) 115, 353
AgsI TTSAA 3 cut(s) 443, 475, 724
AjnI CCWGG 2 cut(s) 280, 516
AluBI AGCT 2 cut(s) 108, 120
AluI AGCT 2 cut(s) 108, 120
Alw26I GTCTC 7 cut(s) 14, 118, 131, 219, 423, 492, 500
AlwI GGATC 3 cut(s) 311, 374, 720
AlwNI CAGNNNCTG 1 cut(s) 181
ApoI RAATTY 1 cut(s) 532
AspLEI GCGC 2 cut(s) 162, 605
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 296
AsuNHI GCTAGC 1 cut(s) 104
AvaII GGWCC 1 cut(s) 244
BccI CCATC 4 cut(s) 79, 83, 281, 634
BciT130I CCWGG 2 cut(s) 282, 518
BcoDI GTCTC 7 cut(s) 14, 118, 131, 219, 423, 492, 500
BfaI CTAG 4 cut(s) 105, 128, 485, 527
BfmI CTRYAG 1 cut(s) 173
BfrI CTTAAG 2 cut(s) 115, 353
Bme1390I CCNGG 2 cut(s) 282, 518
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 2 cut(s) 282, 518
BmsI GCATC 1 cut(s) 69
BmtI GCTAGC 1 cut(s) 108
BpmI CTGGAG 2 cut(s) 142, 405
BsaAI YACGTR 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 228
BsaI GGTCTC 2 cut(s) 131, 500
BsaJI CCNNGG 1 cut(s) 544
BsaWI WCCGGW 1 cut(s) 491
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 287, 517
Bse1I ACTGG 4 cut(s) 63, 232, 391, 559
BseBI CCWGG 2 cut(s) 282, 518
BseDI CCNNGG 1 cut(s) 544
BseGI GGATG 4 cut(s) 84, 94, 316, 371
BseLI CCNNNNNNNGG 3 cut(s) 89, 287, 517
BseNI ACTGG 4 cut(s) 63, 232, 391, 559
BsiSI CCGG 1 cut(s) 492
BslI CCNNNNNNNGG 3 cut(s) 89, 287, 517
BsmAI GTCTC 7 cut(s) 14, 118, 131, 219, 423, 492, 500
BsmBI CGTCTC 3 cut(s) 14, 219, 492
Bso31I GGTCTC 2 cut(s) 131, 500
Bsp143I GATC 3 cut(s) 303, 379, 712
BspACI CCGC 1 cut(s) 584
BspMAI CTGCAG 1 cut(s) 177
BspOI GCTAGC 1 cut(s) 108
BspPI GGATC 3 cut(s) 311, 374, 720
BspTI CTTAAG 2 cut(s) 115, 353
BspTNI GGTCTC 2 cut(s) 131, 500
BsrI ACTGG 4 cut(s) 63, 232, 391, 559
BssECI CCNNGG 1 cut(s) 544
BssMI GATC 3 cut(s) 303, 379, 712
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 544
Bst2UI CCWGG 2 cut(s) 282, 518
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 2 cut(s) 490, 498
BstACI GRCGYC 1 cut(s) 228
BstAFI CTTAAG 2 cut(s) 115, 353
BstAPI GCANNNNNTGC 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 106, 207
BstENI CCTNNNNNAGG 1 cut(s) 515
BstF5I GGATG 4 cut(s) 84, 94, 316, 371
BstHHI GCGC 2 cut(s) 162, 605
BstKTI GATC 3 cut(s) 306, 382, 715
BstMAI GTCTC 7 cut(s) 14, 118, 131, 219, 423, 492, 500
BstMBI GATC 3 cut(s) 303, 379, 712
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 2 cut(s) 282, 518
BstSCI CCNGG 2 cut(s) 280, 516
BstSFI CTRYAG 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 419
BtsCI GGATG 4 cut(s) 84, 94, 316, 371
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 3 cut(s) 60, 182, 552
Cac8I GCNNGC 2 cut(s) 106, 207
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 2 cut(s) 162, 605
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 1 cut(s) 305
Csp6I GTAC 5 cut(s) 66, 72, 149, 717, 742
CviAII CATG 4 cut(s) 75, 292, 300, 399
CviJI RGCY 5 cut(s) 108, 120, 352, 471, 568
CviKI_1 RGCY 5 cut(s) 108, 120, 352, 471, 568
CviQI GTAC 5 cut(s) 66, 72, 149, 717, 742
DpnI GATC 3 cut(s) 305, 381, 714
DpnII GATC 3 cut(s) 303, 379, 712
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 490, 498
EarI CTCTTC 2 cut(s) 490, 498
Eco130I CCWWGG 1 cut(s) 544
Eco31I GGTCTC 2 cut(s) 131, 500
Eco47I GGWCC 1 cut(s) 244
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 280, 516
EcoT14I CCWWGG 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 544
Esp3I CGTCTC 3 cut(s) 14, 219, 492
FaeI CATG 4 cut(s) 78, 295, 303, 402
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FatI CATG 4 cut(s) 74, 291, 299, 398
FokI GGATG 4 cut(s) 91, 101, 323, 378
FspBI CTAG 4 cut(s) 105, 128, 485, 527
GlaI GCGC 2 cut(s) 161, 604
GsuI CTGGAG 2 cut(s) 142, 405
HapII CCGG 1 cut(s) 492
HgaI GACGC 1 cut(s) 305
HhaI GCGC 2 cut(s) 162, 605
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 4 cut(s) 78, 295, 303, 402
Hin6I GCGC 2 cut(s) 160, 603
HinP1I GCGC 2 cut(s) 160, 603
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 4 cut(s) 416, 549, 624, 727
HpaII CCGG 1 cut(s) 492
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 237, 244
Hpy188I TCNGA 1 cut(s) 629
Hpy188III TCNNGA 2 cut(s) 440, 724
Hpy8I GTNNAC 2 cut(s) 237, 244
HpyAV CCTTC 4 cut(s) 287, 521, 641, 730
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 5 cut(s) 23, 151, 189, 228, 336
HpyCH4V TGCA 2 cut(s) 175, 538
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpySE526I ACGT 5 cut(s) 23, 151, 189, 228, 336
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 4 cut(s) 78, 295, 303, 402
HspAI GCGC 2 cut(s) 160, 603
Kzo9I GATC 3 cut(s) 303, 379, 712
LweI GCATC 1 cut(s) 69
MaeI CTAG 4 cut(s) 105, 128, 485, 527
MaeII ACGT 5 cut(s) 23, 151, 189, 228, 336
MaeIII GTNAC 5 cut(s) 185, 368, 487, 650, 686
MalI GATC 3 cut(s) 305, 381, 714
MboI GATC 3 cut(s) 303, 379, 712
MboII GAAGA 3 cut(s) 507, 515, 656
MflI RGATCY 1 cut(s) 303
MluCI AATT 3 cut(s) 94, 443, 532
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 3 cut(s) 180, 187, 570
MseI TTAA 2 cut(s) 116, 354
MspA1I CMGCKG 1 cut(s) 584
MspCI CTTAAG 2 cut(s) 115, 353
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 2 cut(s) 282, 518
MvaI CCWGG 2 cut(s) 282, 518
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 3 cut(s) 303, 379, 712
NheI GCTAGC 1 cut(s) 104
NlaIII CATG 4 cut(s) 78, 295, 303, 402
NmuCI GTSAC 2 cut(s) 368, 686
PfeI GAWTC 3 cut(s) 549, 624, 727
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 152
PsiI TTATAA 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 280, 516
PspGI CCWGG 2 cut(s) 280, 516
PspPI GGNCC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 177
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 1 cut(s) 303
RsaI GTAC 5 cut(s) 67, 73, 150, 718, 743
RsaNI GTAC 5 cut(s) 66, 72, 149, 717, 742
SaqAI TTAA 2 cut(s) 116, 354
Sau3AI GATC 3 cut(s) 303, 379, 712
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 282, 518
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 244
SmlI CTYRAG 2 cut(s) 115, 353
SmoI CTYRAG 2 cut(s) 115, 353
Sse9I AATT 3 cut(s) 94, 443, 532
SsiI CCGC 1 cut(s) 584
SspI AATATT 1 cut(s) 704
SspMI CTAG 4 cut(s) 105, 128, 485, 527
StyD4I CCNGG 2 cut(s) 280, 516
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 5 cut(s) 26, 154, 192, 231, 339
TasI AATT 3 cut(s) 94, 443, 532
TatI WGTACW 3 cut(s) 65, 71, 741
TfiI GAWTC 3 cut(s) 549, 624, 727
Tru1I TTAA 2 cut(s) 116, 354
Tru9I TTAA 2 cut(s) 116, 354
TscAI CASTG 3 cut(s) 60, 182, 559
TseFI GTSAC 2 cut(s) 368, 686
Tsp45I GTSAC 2 cut(s) 368, 686
TspDTI ATGAA 3 cut(s) 22, 422, 576
TspRI CASTG 3 cut(s) 60, 182, 559
Vha464I CTTAAG 2 cut(s) 115, 353
VpaK11BI GGWCC 1 cut(s) 244
XagI CCTNNNNNAGG 1 cut(s) 515
XapI RAATTY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XspI CTAG 4 cut(s) 105, 128, 485, 527
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.