Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006132

Physical Location & Seq

Genomic Coordinates Reverse (-)

3070965 .. 3071571

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0039400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGATCAACTTGTCAAGCATCACCCTCCGTCCATTCCGGCTATCGGATGTCGAAGATCTCATGACATATGCCGGAGACGAGCAAGTGACTCTAAACCTCCGATGGAAGACTTTGACAACCAAAGAGGAGGCTTTCACTTTCCTCAAAGATGTGTGTATCCCACACCCTTGGCGCCGGTCGATATGCATCGATGATCGTTCAATCGGCTTCATATCCGTCTTTCCATGGTCAGGTGATGAGAGTCACAAGGCTGACATGGGGTATGGTATAGCCCCAAAGTATTGGGGACAAGGAATAGTCACTGAAGTAGTTAAGACCGCCGTTCCTCTAGTGTTCAGGGACTTGCCTCATTTGCTTAGGTTGCAAGCTTTTGCATATTCAGAGAATAAGGCCTCTCAGAGGGTGTTGGAGAAAGCTGGGTTCCAGAGGGAGGGTTTGTTGAGGAAATATGAATATATTAAGGGAGAAATTATTGATATGGTTGTTTATAGTTTTCTATCAACAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

170

Amino Acids

19.59

Weight (kDa)

5.95

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	8 - 143	4.9e-24	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	59 - 142	1.9e-08	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38600 AT2G38600
fragaria_vesca	FvH4_6g09510 FvH4_6g09510 FvH4_6g09510 FvH4_6g09510 FvH4_6g09510
malus_domestica	MD04G1176900.v1.1 MD12G1192100.v1.1
prunus_persica	Prupe.6G296600_v2.0.a1 Prupe.6G296600_v2.0.a1
pyrus_communis	pycom04g15620 pycom12g17910
rosa_chinensis	RchiOBHm_Chr3g0460091 RchiOBHm_Chr3g0460101
rosa_laevigata	RLG00000025044
rosa_multiflora	Rmu_sc0000449.1_g000054 Rmu_sc0014731.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419850
rosa_rugosa	Rorug03G0039300 Rorug03G0039400 Rorug03G0039500
rosa_samantha	Rh3AG097900 Rh3BG101000 Rh3CG103100 Rh3DG102300
rosa_wichuraiana	Rw3G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	174
AciI	CCGC	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	175
AfiI	CCNNNNNNNGG	4 cut(s)	46, 233, 402, 433
AgsI	TTSAA	1 cut(s)	204
AluBI	AGCT	2 cut(s)	371, 419
AluI	AGCT	2 cut(s)	371, 419
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	16, 248
BanI	GGYRCC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	116
BccI	CCATC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	308
BciVI	GTATCC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	176, 425
BmsI	GCATC	2 cut(s)	30, 198
BpiI	GAAGAC	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	170, 227
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 233, 402, 433
Bse118I	RCCGGY	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	170, 227
BseGI	GGATG	1 cut(s)	55
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	4 cut(s)	46, 233, 402, 433
BseMII	CTCAG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	143
BseYI	CCCAGC	1 cut(s)	419
Bsh1285I	CGRYCG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	395
BshNI	GGYRCC	1 cut(s)	174
BshVI	ATCGAT	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	182
BsiSI	CCGG	3 cut(s)	40, 75, 178
BslFI	GGGAC	2 cut(s)	303, 356
BslI	CCNNNNNNNGG	4 cut(s)	46, 233, 402, 433
BsmAI	GTCTC	1 cut(s)	72
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	303, 356
BsnI	GGCC	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	6, 58, 196
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	176, 425
BspT107I	GGYRCC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	170, 227
BssMI	GATC	3 cut(s)	6, 58, 196
BssNI	GRCGYC	1 cut(s)	175
BssT1I	CCWWGG	2 cut(s)	170, 227
BstACI	GRCGYC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	359, 399
BstDSI	CCRYGG	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	400
BstF5I	GGATG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	9, 61, 199
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	3 cut(s)	6, 58, 196
BstMCI	CGRYCG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 364
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	2 cut(s)	171, 285
BstYI	RGATCY	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	395
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	369
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	192
CviAII	CATG	3 cut(s)	64, 228, 259
CviJI	RGCY	8 cut(s)	43, 134, 210, 254, 275, 371, 395, 419
CviKI_1	RGCY	8 cut(s)	43, 134, 210, 254, 275, 371, 395, 419
DdeI	CTNAG	2 cut(s)	359, 399
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	3 cut(s)	8, 60, 198
DpnII	GATC	3 cut(s)	6, 58, 196
Eco130I	CCWWGG	2 cut(s)	170, 227
Eco147I	AGGCCT	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	327
EcoNI	CCTNNNNNAGG	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	170, 227
EcoT22I	ATGCAT	1 cut(s)	191
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	170, 227
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	3 cut(s)	67, 231, 262
FaqI	GGGAC	2 cut(s)	303, 356
FatI	CATG	3 cut(s)	63, 227, 258
FauNDI	CATATG	1 cut(s)	70
FokI	GGATG	1 cut(s)	62
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	176
GsaI	CCCAGC	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	3 cut(s)	40, 75, 178
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	67, 231, 262
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	2 cut(s)	91, 244
HpaII	CCGG	3 cut(s)	40, 75, 178
HphI	GGTGA	2 cut(s)	16, 248
Hpy188I	TCNGA	4 cut(s)	49, 104, 385, 402
Hpy188III	TCNNGA	2 cut(s)	64, 427
HpyCH4V	TGCA	3 cut(s)	189, 367, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 364
HpyF3I	CTNAG	2 cut(s)	359, 399
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	67, 231, 262
HspAI	GCGC	1 cut(s)	175
KasI	GGCGCC	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	6, 58, 196
LpnPI	CCDG	7 cut(s)	53, 88, 191, 219, 325, 405, 440
LweI	GCATC	2 cut(s)	30, 198
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	3 cut(s)	88, 245, 301
MalI	GATC	3 cut(s)	8, 60, 198
MboI	GATC	3 cut(s)	6, 58, 196
MboII	GAAGA	2 cut(s)	68, 121
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	1 cut(s)	471
Mly113I	GGCGCC	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	85, 253
MmeI	TCCRAC	1 cut(s)	390
Mph1103I	ATGCAT	1 cut(s)	191
MseI	TTAA	2 cut(s)	315, 462
MspI	CCGG	3 cut(s)	40, 75, 178
MwoI	GCNNNNNNNGC	2 cut(s)	355, 364
NarI	GGCGCC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	3 cut(s)	6, 58, 196
NlaIII	CATG	3 cut(s)	67, 231, 262
NlaIV	GGNNCC	2 cut(s)	176, 425
NmuCI	GTSAC	3 cut(s)	88, 245, 301
NsiI	ATGCAT	1 cut(s)	191
PagI	TCATGA	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	395
PleI	GAGTC	2 cut(s)	85, 252
PluTI	GGCGCC	1 cut(s)	178
PpsI	GAGTC	2 cut(s)	85, 252
PspFI	CCCAGC	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	176, 425
PsuI	RGATCY	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	315, 462
Sau3AI	GATC	3 cut(s)	6, 58, 196
SchI	GAGTC	2 cut(s)	85, 253
SetI	ASST	5 cut(s)	102, 238, 365, 373, 421
SfaNI	GCATC	2 cut(s)	30, 198
SfoI	GGCGCC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	471
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	321
SspDI	GGCGCC	1 cut(s)	174
SspMI	CTAG	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	395
StyI	CCWWGG	2 cut(s)	170, 227
TaqI	TCGA	3 cut(s)	54, 182, 192
TasI	AATT	1 cut(s)	471
Tru1I	TTAA	2 cut(s)	315, 462
Tru9I	TTAA	2 cut(s)	315, 462
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	3 cut(s)	88, 245, 301
Tsp45I	GTSAC	3 cut(s)	88, 245, 301
TspDTI	ATGAA	2 cut(s)	202, 468
TspGWI	ACGGA	2 cut(s)	20, 208
TspRI	CASTG	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	400
XspI	CTAG	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.