Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000449.1

Orthogroup ID

OG0016531

Physical Location & Seq

Genomic Coordinates Forward (+)

243193 .. 244633

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000449.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgaacgatgcagacgtgtcgaagcagatccagcagatggtcagattcatacgccaagaagctgaagaaaaagccaatgagatttccgtttctgcagaggaggagtttaacattgagaaactacaaatagccgaagcggagaagaagaagatcagacaagattatgaacgcaaggcaaagcaggtcgaggttagaaggaaaattgaatactcgatgcaactgaatgcttcgcgtataaaagttctacaagcacaagatgacatattaacttccatgaaagaatctgctggtaaggaacttgtgcgtgtttcagaggacaagaaggcttacaagaagctcatgaaagacttgattgttcagagtttgattcgactgaaggagccagcagtgctgcttagatgcagagaggttgacaggaagcttgttgagtctgttttggaggaagcaaagaaaatttatgctgataaaggatttgctccacccaaaattaccattgatgatcgagtgtatctcccaccgcctccaaagggtggcgattcccatgaacccttttgttcgggtggagtggtgttggcctctcaagatggaaagatagtgtctgaaaataccctcgatgcacgattggatgtcgtcttcagacagaaactgcctcagatcaggaagcaccttttaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko00380 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map00380 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

vATP-synt_E

Protein Analysis

225

Amino Acids

25.74

Weight (kDa)

9.01

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08560
fragaria_vesca	FvH4_6g09500
malus_domestica	MD04G1177000.v1.1 MD12G1192200.v1.1
prunus_persica	Prupe.6G296700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0460081
rosa_laevigata	RLG00000025045
rosa_multiflora	Rmu_sc0000449.1_g000055
rosa_roxburghii	Rroxscaffold_6G00419860
rosa_rugosa	Rorug03G0039300
rosa_samantha	Rh3BG100900 Rh3CG103000 Rh3DG102200
rosa_wichuraiana	Rw3G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	172
AccB7I	CCANNNNNTGG	2 cut(s)	37, 530
AccII	CGCG	1 cut(s)	232
AciI	CCGC	2 cut(s)	137, 518
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	453
AcuI	CTGAAG	3 cut(s)	84, 395, 619
AfiI	CCNNNNNNNGG	3 cut(s)	37, 527, 530
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	206
AjiI	CACGTC	1 cut(s)	16
AluBI	AGCT	3 cut(s)	62, 337, 421
AluI	AGCT	3 cut(s)	62, 337, 421
AlwI	GGATC	1 cut(s)	22
AlwNI	CAGNNNCTG	1 cut(s)	646
AoxI	GGCC	1 cut(s)	573
ApeKI	GCWGC	1 cut(s)	391
ApoI	RAATTY	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	625
BbvI	GCAGC	1 cut(s)	378
BccI	CCATC	2 cut(s)	31, 578
BcgI	CGANNNNNNTGC	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	172
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
BmgBI	CACGTC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	381
BmsI	GCATC	3 cut(s)	204, 389, 604
BpiI	GAAGAC	1 cut(s)	625
BplI	GAGNNNNNCTC	2 cut(s)	495, 527
BpuEI	CTTGAG	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 527, 530
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	3 cut(s)	37, 527, 530
BseMII	CTCAG	1 cut(s)	665
BseRI	GAGGAG	2 cut(s)	113, 116
BseXI	GCAGC	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	575
BslI	CCNNNNNNNGG	3 cut(s)	37, 527, 530
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	575
Bsp143I	GATC	4 cut(s)	27, 150, 499, 654
BspACI	CCGC	2 cut(s)	137, 518
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	1 cut(s)	664
BspFNI	CGCG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	381
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	22
BssMI	GATC	4 cut(s)	27, 150, 499, 654
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	395, 651
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	232
BstKTI	GATC	4 cut(s)	30, 153, 502, 657
BstMBI	GATC	4 cut(s)	27, 150, 499, 654
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 388
BstSFI	CTRYAG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	625
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	575
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	393
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	646
CciI	TCATGA	1 cut(s)	339
CviAII	CATG	3 cut(s)	274, 340, 542
CviJI	RGCY	8 cut(s)	62, 74, 131, 326, 337, 382, 421, 575
CviKI_1	RGCY	8 cut(s)	62, 74, 131, 326, 337, 382, 421, 575
DdeI	CTNAG	2 cut(s)	395, 651
DpnI	GATC	4 cut(s)	29, 152, 501, 656
DpnII	GATC	4 cut(s)	27, 150, 499, 654
Eco57I	CTGAAG	3 cut(s)	84, 395, 619
FaeI	CATG	3 cut(s)	277, 343, 545
FaiI	YATR	8 cut(s)	50, 165, 236, 263, 275, 341, 459, 543
FatI	CATG	3 cut(s)	273, 339, 541
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	1 cut(s)	392
GluI	GCNGC	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	575
Hin1II	CATG	3 cut(s)	277, 343, 545
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	5 cut(s)	45, 281, 367, 428, 536
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	7 cut(s)	44, 155, 313, 360, 601, 638, 654
Hpy188III	TCNNGA	3 cut(s)	340, 581, 658
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	3 cut(s)	189, 316, 370
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	5 cut(s)	11, 95, 217, 402, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 388
HpyF3I	CTNAG	2 cut(s)	395, 651
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	277, 343, 545
Kzo9I	GATC	4 cut(s)	27, 150, 499, 654
LmnI	GCTCC	2 cut(s)	379, 481
LpnPI	CCDG	6 cut(s)	44, 167, 273, 396, 400, 643
Lsp1109I	GCAGC	1 cut(s)	378
LweI	GCATC	3 cut(s)	204, 389, 604
MaeII	ACGT	1 cut(s)	15
MalI	GATC	4 cut(s)	29, 152, 501, 656
MboI	GATC	4 cut(s)	27, 150, 499, 654
MboII	GAAGA	5 cut(s)	77, 154, 157, 160, 625
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	3 cut(s)	201, 453, 486
MlyI	GAGTC	1 cut(s)	437
MseI	TTAA	2 cut(s)	108, 266
Mva1269I	GAATGC	1 cut(s)	229
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	31, 388
NdeII	GATC	4 cut(s)	27, 150, 499, 654
NlaIII	CATG	3 cut(s)	277, 343, 545
NlaIV	GGNNCC	1 cut(s)	381
PagI	TCATGA	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	4 cut(s)	45, 281, 367, 536
PflMI	CCANNNNNTGG	2 cut(s)	37, 530
PkrI	GCNGC	1 cut(s)	393
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	381
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	108, 266
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	4 cut(s)	27, 150, 499, 654
SchI	GAGTC	1 cut(s)	437
SetI	ASST	8 cut(s)	18, 64, 186, 192, 339, 411, 423, 669
SfaNI	GCATC	3 cut(s)	204, 389, 604
SfcI	CTRYAG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
Sse9I	AATT	3 cut(s)	201, 453, 486
SsiI	CCGC	2 cut(s)	137, 518
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	6 cut(s)	20, 186, 212, 370, 502, 612
TasI	AATT	3 cut(s)	201, 453, 486
TfiI	GAWTC	4 cut(s)	45, 281, 367, 536
Tru1I	TTAA	2 cut(s)	108, 266
Tru9I	TTAA	2 cut(s)	108, 266
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	1 cut(s)	391
TspDTI	ATGAA	6 cut(s)	17, 37, 180, 290, 356, 558
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	393
Van91I	CCANNNNNTGG	2 cut(s)	37, 530
XapI	RAATTY	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.