AT3G08930

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011383
Physical Location & Seq
Forward (+)
2713312 .. 2717366
4055 bp
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UTR
Exon/CDS
Intron
AT3G08930.1

Sequence Viewer

Length: 1530 bp
ATGGGCGATTTCAACCTCGCTCTCGTGATTGTCGCGATCGTTGTTTGCGTCATCGTATTCATCTCTAGCATCTATCTTCTCGTCAACTATCAGCATCCAGATGATGCAAACCAGGCTTATTTCCCCAAATTCGTCGTTGTTTTTGGCCTTTCTATTGCTATGATCTCGATTCTCATGTTACCGGCTGATGTGGCCAATCGGCATGCTTGTCGACATGCTATATACAATGGAGCTTGCAATCTCACCTTGCCCATGAAGGATCTTTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAATGTTTTTCTATGAAGGCGACCAGGACAAGACTCTTGGAAAGAGGATAAAAAGTGCCTTAATTTGGGTAGTTACCACGGCTGTTGTTTGTGCTCTGGTGCTTGGAATTTTATATGGTGTCATTGGAAAGGTGGACTTCTCGGTCAGGCATTTGGCTTCTGCCACATCCACTTTCCCTACTTCCTGGCAGTTTTCAAATACTCAACCATGCATAGGTAACACTGCTCGCCAGTGCTCAGCATTTACAGCTAATCCCACATCTGAGAAAACATGGACTATGCGTACTACTTTTCCAGAATATGTTGTTGCTCTTGCGACAATTGTTGGGTCAGTTCTTTTCACGATATTTGGTGGTGTTGGTATTGCATGTCTACCATTAGGACTTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGATCACAATATATAAAGGAGGCAACCGAACTAGGTAAAAAGGCAAGAGAACTAAAGAAAGCAGCTGATGGACTTCATCAGGAAGAAAGAAGTGGTGCTAAGGGCAGGAAATGGCGGAAAAATGTGAAAGCAGTTGAAAAGGAGTTGCTCCAATTGGAGGAAGATGTGAACCTCTTAGAAGAGATGTATCCTCAAGGAGAGCAGGCAGAAACTGCATGGGCTTTCACTGTGCTCGGATACTTGGCCAAGTTTATTCTTGGAATCGTAGGATTGATCGTTTCCATTGCTTGGGTTGCACACATCATCATATATCTACTCGTCGACCCTCCTCTCTCCCCTTTTCTTAACGAGGTTTTCATTAAGCTTGATGATGTTTGGGGTCTTTTAGGCACTGCTGCCTTTGCTTTCTTCTGTTTCTACCTTCTACTTGCTGTTATCGCTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCCTCATTCTTCTTTGTTCAATCAGCGTGATTCAATTTTGTGCCACTGCATTTGGATATTACGCTCAAGCCACTGCTGCCCAGGAGATATTTGGCCACACATTGCAGTCCCTTAGAGGAATTAAGTACCTTTACAAGTACAATGTGTTCCAAATCGGGTTTGTTATCCTGGCTGGACTGACTTTCCTATATTACATTGCCTTTGGATGGAGAAGAAAAAAAACTAGTGGCCGTTTCCAGCTCTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04977 map04977
Pfam Domains
Protein Families
LMBR1

Protein Analysis

509

Amino Acids

56.54

Weight (kDa)

9.05

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LMBR1 PF04791 9 - 274 5.2e-45 LMBR1-like membrane protein
LMBR1 PF04791 278 - 487 4e-28 LMBR1-like membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08930 AT5G01460
fragaria_vesca FvH4_6g11450 FvH4_6g11450 FvH4_6g11450
malus_domestica MD04G1152700.v1.1 MD12G1166000.v1.1
prunus_persica Prupe.6G277300_v2.0.a1
pyrus_communis pycom04g13840 pycom12g15830
rosa_chinensis RchiOBHm_Chr3g0463141
rosa_laevigata RLG00000024810
rosa_multiflora Rmu_sc0008124.1_g000007
rosa_roxburghii Rroxscaffold_6G00416940
rosa_rugosa Rorug03G0061700
rosa_samantha Rh3AG119900 Rh3BG124300 Rh3CG126300 Rh3DG125300
rosa_wichuraiana Rw3G010140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 461
AccB7I CCANNNNNTGG 1 cut(s) 1032
AccI GTMKAC 3 cut(s) 211, 691, 1065
AccII CGCG 1 cut(s) 35
AciI CCGC 1 cut(s) 859
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 4 cut(s) 192, 987, 1372, 1507
AcsI RAATTY 2 cut(s) 128, 426
AfaI GTAC 3 cut(s) 604, 1406, 1418
AfiI CCNNNNNNNGG 5 cut(s) 384, 533, 901, 1032, 1485
AgsI TTSAA 7 cut(s) 13, 516, 881, 1207, 1273, 1299, 1313
AhlI ACTAGT 1 cut(s) 1502
AjnI CCWGG 5 cut(s) 111, 342, 503, 1359, 1446
AluBI AGCT 7 cut(s) 233, 569, 809, 1108, 1210, 1247, 1519
AluI AGCT 7 cut(s) 233, 569, 809, 1108, 1210, 1247, 1519
Alw21I GWGCWC 3 cut(s) 415, 557, 978
AlwI GGATC 1 cut(s) 267
AlwNI CAGNNNCTG 1 cut(s) 956
AoxI GGCC 6 cut(s) 145, 192, 987, 1279, 1372, 1507
ApeKI GCWGC 3 cut(s) 806, 1139, 1355
ApoI RAATTY 2 cut(s) 128, 426
Asp700I GAANNNNTTC 1 cut(s) 1262
AsuHPI GGTGA 1 cut(s) 235
BalI TGGCCA 3 cut(s) 194, 989, 1374
BauI CACGAG 2 cut(s) 23, 296
BbsI GAAGAC 1 cut(s) 1207
Bbv12I GWGCWC 3 cut(s) 415, 557, 978
BbvI GCAGC 3 cut(s) 818, 1126, 1342
BccI CCATC 2 cut(s) 806, 1479
BceAI ACGGC 2 cut(s) 414, 1494
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 5 cut(s) 113, 344, 505, 1361, 1448
BciVI GTATCC 2 cut(s) 942, 974
BcuI ACTAGT 1 cut(s) 1502
BfaI CTAG 3 cut(s) 66, 776, 1503
BfuI GTATCC 2 cut(s) 942, 974
BisI GCNGC 3 cut(s) 807, 1140, 1356
BlpI GCTNAGC 1 cut(s) 556
BlsI GCNGC 3 cut(s) 808, 1141, 1357
Bme1390I CCNGG 5 cut(s) 113, 344, 505, 1361, 1448
BmrFI CCNGG 5 cut(s) 113, 344, 505, 1361, 1448
BmsI GCATC 4 cut(s) 78, 94, 103, 1185
BpiI GAAGAC 1 cut(s) 1207
Bpu10I CCTNAGC 1 cut(s) 843
Bpu1102I GCTNAGC 1 cut(s) 556
BpuEI CTTGAG 2 cut(s) 921, 1329
BsaJI CCNNGG 2 cut(s) 396, 1359
Bsc4I CCNNNNNNNGG 5 cut(s) 384, 533, 901, 1032, 1485
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 5 cut(s) 327, 1026, 1197, 1379, 1473
BseBI CCWGG 5 cut(s) 113, 344, 505, 1361, 1448
BseDI CCNNGG 2 cut(s) 396, 1359
BseGI GGATG 5 cut(s) 94, 309, 485, 1228, 1490
BseLI CCNNNNNNNGG 5 cut(s) 384, 533, 901, 1032, 1485
BseMI GCAATG 5 cut(s) 327, 1026, 1197, 1379, 1473
BseMII CTCAG 2 cut(s) 570, 573
BseNI ACTGG 1 cut(s) 550
BseRI GAGGAG 1 cut(s) 1062
BseXI GCAGC 3 cut(s) 818, 1126, 1342
BseYI CCCAGC 2 cut(s) 1184, 1198
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 6 cut(s) 147, 194, 989, 1281, 1374, 1509
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 3 cut(s) 415, 557, 978
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 1372
BslI CCNNNNNNNGG 5 cut(s) 384, 533, 901, 1032, 1485
BsmFI GGGAC 1 cut(s) 1372
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 6 cut(s) 147, 194, 989, 1281, 1374, 1509
Bsp1286I GDGCHC 3 cut(s) 415, 557, 978
Bsp143I GATC 5 cut(s) 36, 162, 259, 746, 1017
Bsp1720I GCTNAGC 1 cut(s) 556
Bsp68I TCGCGA 1 cut(s) 35
BspACI CCGC 1 cut(s) 859
BspANI GGCC 6 cut(s) 147, 194, 989, 1281, 1374, 1509
BspCNI CTCAG 2 cut(s) 569, 574
BspFNI CGCG 1 cut(s) 35
BspPI GGATC 1 cut(s) 267
BsrDI GCAATG 5 cut(s) 327, 1026, 1197, 1379, 1473
BsrFI RCCGGY 1 cut(s) 181
BsrI ACTGG 1 cut(s) 550
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 396, 1359
BssMI GATC 5 cut(s) 36, 162, 259, 746, 1017
BssSI CACGAG 2 cut(s) 23, 296
Bst2BI CACGAG 2 cut(s) 23, 296
Bst2UI CCWGG 5 cut(s) 113, 344, 505, 1361, 1448
Bst4CI ACNGT 1 cut(s) 973
Bst6I CTCTTC 2 cut(s) 918, 1274
BstAPI GCANNNNNTGC 1 cut(s) 956
BstC8I GCNNGC 5 cut(s) 204, 235, 270, 547, 948
BstDEI CTNAG 5 cut(s) 556, 582, 843, 919, 1391
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 5 cut(s) 94, 309, 485, 1228, 1490
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 5 cut(s) 39, 165, 262, 749, 1020
BstMBI GATC 5 cut(s) 36, 162, 259, 746, 1017
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 8 cut(s) 113, 191, 566, 956, 1037, 1145, 1181, 1355
BstNI CCWGG 5 cut(s) 113, 344, 505, 1361, 1448
BstNSI RCATGY 3 cut(s) 206, 218, 690
BstSCI CCNGG 5 cut(s) 111, 342, 503, 1359, 1446
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 818, 1126, 1342
BstV2I GAAGAC 1 cut(s) 1207
BstX2I RGATCY 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 1239
BstYI RGATCY 1 cut(s) 259
BsuI GTATCC 2 cut(s) 942, 974
BsuRI GGCC 6 cut(s) 147, 194, 989, 1281, 1374, 1509
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 5 cut(s) 94, 309, 485, 1228, 1490
BtsI GCAGTG 5 cut(s) 540, 708, 1134, 1323, 1350
BtsIMutI CAGTG 7 cut(s) 540, 557, 708, 969, 1134, 1323, 1350
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 5 cut(s) 204, 235, 270, 547, 948
CaiI CAGNNNCTG 1 cut(s) 956
Cfr10I RCCGGY 1 cut(s) 181
CseI GACGC 2 cut(s) 37, 296
Csp6I GTAC 3 cut(s) 603, 1405, 1417
CspCI CAANNNNNGTGG 4 cut(s) 385, 420, 1312, 1347
CviAII CATG 8 cut(s) 175, 203, 215, 253, 528, 591, 687, 960
CviQI GTAC 3 cut(s) 603, 1405, 1417
DdeI CTNAG 5 cut(s) 556, 582, 843, 919, 1391
DpnI GATC 5 cut(s) 38, 164, 261, 748, 1019
DpnII GATC 5 cut(s) 36, 162, 259, 746, 1017
DrdI GACNNNNNNGTC 1 cut(s) 461
DseDI GACNNNNNNGTC 1 cut(s) 461
EaeI YGGCCR 4 cut(s) 192, 987, 1372, 1507
Eam1104I CTCTTC 2 cut(s) 918, 1274
EarI CTCTTC 2 cut(s) 918, 1274
EciI GGCGGA 1 cut(s) 874
EcoRII CCWGG 5 cut(s) 111, 342, 503, 1359, 1446
EcoT22I ATGCAT 1 cut(s) 533
FaeI CATG 8 cut(s) 178, 206, 218, 256, 531, 594, 690, 963
FalI AAGNNNNNCTT 4 cut(s) 440, 472, 1199, 1231
FaqI GGGAC 1 cut(s) 1372
FatI CATG 8 cut(s) 174, 202, 214, 252, 527, 590, 686, 959
FblI GTMKAC 3 cut(s) 211, 691, 1065
Fnu4HI GCNGC 3 cut(s) 807, 1140, 1356
FokI GGATG 5 cut(s) 81, 296, 472, 1215, 1497
Fsp4HI GCNGC 3 cut(s) 807, 1140, 1356
FspBI CTAG 3 cut(s) 66, 776, 1503
GluI GCNGC 3 cut(s) 807, 1140, 1356
GsaI CCCAGC 2 cut(s) 1188, 1202
HaeIII GGCC 6 cut(s) 147, 194, 989, 1281, 1374, 1509
HapII CCGG 1 cut(s) 182
HgaI GACGC 2 cut(s) 37, 296
Hin1II CATG 8 cut(s) 178, 206, 218, 256, 531, 594, 690, 963
HincII GTYRAC 3 cut(s) 85, 212, 1066
HindII GTYRAC 3 cut(s) 85, 212, 1066
HindIII AAGCTT 1 cut(s) 1106
HinfI GANTC 4 cut(s) 169, 352, 1005, 1309
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 7 cut(s) 85, 212, 286, 454, 692, 913, 1066
Hpy188I TCNGA 2 cut(s) 583, 980
Hpy188III TCNNGA 7 cut(s) 25, 34, 98, 166, 614, 661, 824
Hpy8I GTNNAC 7 cut(s) 85, 212, 286, 454, 692, 913, 1066
Hpy99I CGWCG 2 cut(s) 137, 1067
HpyAV CCTTC 4 cut(s) 250, 325, 329, 1175
HpyCH4III ACNGT 1 cut(s) 973
HpyCH4V TGCA 9 cut(s) 107, 237, 531, 686, 713, 959, 1040, 1328, 1384
HpyF10VI GCNNNNNNNGC 8 cut(s) 113, 191, 566, 956, 1037, 1145, 1181, 1355
HpyF3I CTNAG 5 cut(s) 556, 582, 843, 919, 1391
Hsp92II CATG 8 cut(s) 178, 206, 218, 256, 531, 594, 690, 963
Kzo9I GATC 5 cut(s) 36, 162, 259, 746, 1017
LmnI GCTCC 3 cut(s) 230, 897, 1244
Lsp1109I GCAGC 3 cut(s) 818, 1126, 1342
LweI GCATC 4 cut(s) 78, 94, 103, 1185
MaeI CTAG 3 cut(s) 66, 776, 1503
MaeIII GTNAC 3 cut(s) 177, 391, 536
MalI GATC 5 cut(s) 38, 164, 261, 748, 1019
MboI GATC 5 cut(s) 36, 162, 259, 746, 1017
MfeI CAATTG 2 cut(s) 639, 896
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 3 cut(s) 415, 557, 978
MlsI TGGCCA 3 cut(s) 194, 989, 1374
MluCI AATT 7 cut(s) 128, 381, 426, 639, 896, 1313, 1398
MluNI TGGCCA 3 cut(s) 194, 989, 1374
MlyI GAGTC 1 cut(s) 346
Mox20I TGGCCA 3 cut(s) 194, 989, 1374
Mph1103I ATGCAT 1 cut(s) 533
MroXI GAANNNNTTC 1 cut(s) 1262
MscI TGGCCA 3 cut(s) 194, 989, 1374
MseI TTAA 5 cut(s) 380, 1089, 1104, 1401, 1528
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 3 cut(s) 194, 989, 1374
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 5 cut(s) 113, 344, 505, 1361, 1448
MunI CAATTG 2 cut(s) 639, 896
Mva1269I GAATGC 1 cut(s) 713
MvaI CCWGG 5 cut(s) 113, 344, 505, 1361, 1448
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 8 cut(s) 113, 191, 566, 956, 1037, 1145, 1181, 1355
NdeII GATC 5 cut(s) 36, 162, 259, 746, 1017
NlaIII CATG 8 cut(s) 178, 206, 218, 256, 531, 594, 690, 963
NruI TCGCGA 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 533
NspI RCATGY 3 cut(s) 206, 218, 690
PaeI GCATGC 1 cut(s) 206
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 294
PctI GAATGC 1 cut(s) 713
PdmI GAANNNNTTC 1 cut(s) 1262
PfeI GAWTC 3 cut(s) 169, 1005, 1309
PflMI CCANNNNNTGG 1 cut(s) 1032
PkrI GCNGC 3 cut(s) 808, 1141, 1357
Ple19I CGATCG 1 cut(s) 39
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp6I CCWGG 5 cut(s) 111, 342, 503, 1359, 1446
PspFI CCCAGC 2 cut(s) 1184, 1198
PspGI CCWGG 5 cut(s) 111, 342, 503, 1359, 1446
PsrI GAACNNNNNNTAC 2 cut(s) 1409, 1441
PstNI CAGNNNCTG 1 cut(s) 956
PsuI RGATCY 1 cut(s) 259
PvuI CGATCG 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 809
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 3 cut(s) 604, 1406, 1418
RsaNI GTAC 3 cut(s) 603, 1405, 1417
RseI CAYNNNNRTG 1 cut(s) 99
SalI GTCGAC 2 cut(s) 210, 1064
SaqAI TTAA 5 cut(s) 380, 1089, 1104, 1401, 1528
SatI GCNGC 3 cut(s) 807, 1140, 1356
Sau3AI GATC 5 cut(s) 36, 162, 259, 746, 1017
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 5 cut(s) 113, 344, 505, 1361, 1448
SduI GDGCHC 3 cut(s) 415, 557, 978
SfaNI GCATC 4 cut(s) 78, 94, 103, 1185
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 936, 1344
SmoI CTYRAG 2 cut(s) 936, 1344
SpeI ACTAGT 1 cut(s) 1502
SphI GCATGC 1 cut(s) 206
Sse9I AATT 7 cut(s) 128, 381, 426, 639, 896, 1313, 1398
SsiI CCGC 1 cut(s) 859
SspMI CTAG 3 cut(s) 66, 776, 1503
StyD4I CCNGG 5 cut(s) 111, 342, 503, 1359, 1446
TaaI ACNGT 1 cut(s) 973
TaqI TCGA 4 cut(s) 167, 211, 745, 1065
TaqII GACCGA 1 cut(s) 451
TasI AATT 7 cut(s) 128, 381, 426, 639, 896, 1313, 1398
TatI WGTACW 1 cut(s) 1416
TfiI GAWTC 3 cut(s) 169, 1005, 1309
Tru1I TTAA 5 cut(s) 380, 1089, 1104, 1401, 1528
Tru9I TTAA 5 cut(s) 380, 1089, 1104, 1401, 1528
TscAI CASTG 7 cut(s) 547, 557, 715, 976, 1141, 1330, 1357
TseI GCWGC 3 cut(s) 806, 1139, 1355
TspRI CASTG 7 cut(s) 547, 557, 715, 976, 1141, 1330, 1357
Van91I CCANNNNNTGG 1 cut(s) 1032
XapI RAATTY 2 cut(s) 128, 426
XceI RCATGY 3 cut(s) 206, 218, 690
XcmI CCANNNNNNNNNTGG 1 cut(s) 1367
XmiI GTMKAC 3 cut(s) 211, 691, 1065
XmnI GAANNNNTTC 1 cut(s) 1262
XspI CTAG 3 cut(s) 66, 776, 1503
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.