MD12G1166000.v1.1

LIMR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
24681510 .. 24685886
4377 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1166000.v1.1.491

Sequence Viewer

Length: 1527 bp
ATGGGCGATTTCAACCTCGCGCTCGTCATCGTCGCTATTATCCTCTGCATCATCGTCTTCGTCTTCAATGTCTACCTGCTCGTCAATTACCAGCACCCCGACGACAAGAACCAGGCCTACTTCCCCAAATTCGTCGTCGTTTTGGGGCTCTCCGTCGCCGCTATTTCAATACTCATGCTGCCGGCCGACGTGGCCAACCGCCAGGCGTGTCGCCACGCGATTTATAATGGCGCGTGCAATCTCACTCTTCCGATGAAGGATCTGTGGCTCGCAATCTATATCCTTGACGCCGTGCTCGTGTTCTTCATCATCCCCTTCGCTATGTTCTACTACGAAGGAGACCAGGACAAGAGTGTTGGAAAACGGATTGGAAGCGCGTTGTTGTGGGTTGCGGTGACCGCCGTTGTCTGCGCTCTCGTGCTCGGAATCTTATACGGGTTAGTTGGGAAGGTGGATTTTACTGTTAGGCACCTCTCTTCTTCCACAACTTCCTTTCCCAGTTCATTTCAATTTTCTAGCAGTAATGAATGCATAAATGGCGCAAAGGCGTGCTCTGCATATCTTGCAAGCGATACGTCAGAGAAAACATGGACAATGCGTACTACCTTTCCAGAATATGTCGTTGCACTTGCTACCATTGTTGGATCCGTGCTTTTTACTATATTCGGTGGTGTTGGCATTGCCTGTCTACCGCTGGGACTCATATTTTCATTCATTCGGCGTCCAAAGGCTGTTATTACTCGGTCACAGTATATCAAGGAAGCTACTGAACTGGGCAAGAAAGCAAAAGAGTTGAAGAAAGCAGCTGATGCGCTTCATCAAGAAGAAAGAGCTGGCTCTAAGGGTAGAAAATGGCGTAAAAATGTAAAGGCAGTAGAGAAGGAGTTGCTTCAATTAGAAGAAGATGTAAAACTTTTAGAAGAGGTGTATCCTCAAGGAGAGAAAGCTGAGACTACTTGGGCTATGACAGTTCTTGGGTACTTGGCAAAACTTGTGTTGGGAATCTTAGGATTGATTGTTTCAGTGGCTTGGATTGCTCATATTGTCATATATCTATTGATTAGCCCTCCGCTTTCTCCTTTCTTGAACGAAGTTTTCATCAAGCTGGATGATGTTTGGGGTCTTTTAGGCACTGTTGCGTTTGCATTCTTCTGCTTCTACCTTCTGCTTGCAGTCATTGCTGGGTCGATGATGCTTGGGCTGAAATTAGTTTTCATCACAATTCATCCGATGAAGTGGGGTGCTACTCTAATGAATTCATTTTTATTTAATGTGGGACTTATACTACTTAGCTCCATCAGTGTGATTCAGTTCTGCTCCACGGCATTTGCATACTATGCTCAAGCAACTGCAGCACAAGAAATATTTGGTCACACCTTGGAATCTCTTCGTGGAATTAGATATCTGTACAAGTACAATGTGTTCCAAATTGCATTTATTGTCCTGGCAGGACTGACGTTTGTGTACTATGCTGCTTTTGGCTGGAGAAGAAAAAAACCTAGCGGCAGGTTCCAACTTTCCTCGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

56.31

Weight (kDa)

9.06

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LMBR1 PF04791 9 - 275 4e-45 LMBR1-like membrane protein
LMBR1 PF04791 266 - 486 7.6e-27 LMBR1-like membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011383)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
Acc36I ACCTGC 2 cut(s) 84, 1497
AccB1I GGYRCC 1 cut(s) 468
AccI GTMKAC 2 cut(s) 72, 688
AccII CGCG 4 cut(s) 20, 218, 233, 377
AciI CCGC 7 cut(s) 159, 199, 392, 399, 692, 1070, 1503
AclWI GGATC 3 cut(s) 267, 639, 652
AcoI YGGCCR 2 cut(s) 183, 192
AcsI RAATTY 2 cut(s) 128, 1255
AcyI GRCGYC 2 cut(s) 288, 721
AfaI GTAC 5 cut(s) 601, 980, 1409, 1415, 1466
AgsI TTSAA 7 cut(s) 13, 67, 168, 509, 796, 893, 1087
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 4 cut(s) 111, 201, 342, 1443
AluBI AGCT 6 cut(s) 764, 806, 833, 947, 1105, 1293
AluI AGCT 6 cut(s) 764, 806, 833, 947, 1105, 1293
Alw21I GWGCWC 3 cut(s) 297, 423, 554
Alw26I GTCTC 2 cut(s) 333, 944
AlwI GGATC 3 cut(s) 267, 639, 652
AoxI GGCC 3 cut(s) 114, 183, 192
ApeKI GCWGC 4 cut(s) 178, 803, 1352, 1472
ApoI RAATTY 2 cut(s) 128, 1255
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 1 cut(s) 1386
AspLEI GCGC 6 cut(s) 22, 233, 377, 413, 542, 814
AsuHPI GGTGA 1 cut(s) 406
BalI TGGCCA 1 cut(s) 194
BamHI GGATCC 1 cut(s) 644
BanI GGYRCC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 150
BauI CACGAG 2 cut(s) 296, 416
BbsI GAAGAC 2 cut(s) 49, 55
Bbv12I GWGCWC 3 cut(s) 297, 423, 554
BbvI GCAGC 4 cut(s) 165, 815, 1364, 1459
BccI CCATC 1 cut(s) 1304
BceAI ACGGC 3 cut(s) 275, 386, 1338
BciT130I CCWGG 4 cut(s) 113, 203, 344, 1445
BciVI GTATCC 1 cut(s) 939
BcoDI GTCTC 2 cut(s) 333, 944
BfaI CTAG 2 cut(s) 516, 1500
BfmI CTRYAG 1 cut(s) 1350
BfuAI ACCTGC 2 cut(s) 84, 1497
BfuI GTATCC 1 cut(s) 939
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 6 cut(s) 159, 179, 804, 1353, 1473, 1504
BlsI GCNGC 6 cut(s) 160, 180, 805, 1354, 1474, 1505
Bme1390I CCNGG 4 cut(s) 113, 203, 344, 1445
BmgBI CACGTC 1 cut(s) 190
BmiI GGNNCC 3 cut(s) 470, 646, 1511
BmrFI CCNGG 4 cut(s) 113, 203, 344, 1445
BmrI ACTGGG 2 cut(s) 492, 782
BmsI GCATC 3 cut(s) 57, 799, 1182
BmuI ACTGGG 2 cut(s) 492, 782
BpiI GAAGAC 2 cut(s) 49, 55
BpmI CTGGAG 1 cut(s) 1504
BpuEI CTTGAG 2 cut(s) 918, 1326
BsaHI GRCGYC 2 cut(s) 288, 721
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 1320, 1377
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 498, 777
Bse3DI GCAATG 2 cut(s) 678, 1176
BseBI CCWGG 4 cut(s) 113, 203, 344, 1445
BseDI CCNNGG 2 cut(s) 1320, 1377
BseGI GGATG 3 cut(s) 309, 1114, 1225
BseMI GCAATG 2 cut(s) 678, 1176
BseMII CTCAG 1 cut(s) 939
BseNI ACTGG 2 cut(s) 498, 777
BseX3I CGGCCG 1 cut(s) 183
BseXI GCAGC 4 cut(s) 165, 815, 1364, 1459
BseYI CCCAGC 2 cut(s) 694, 1181
Bsh1236I CGCG 4 cut(s) 20, 218, 233, 377
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 3 cut(s) 116, 185, 194
BshNI GGYRCC 1 cut(s) 468
BsiEI CGRYCG 1 cut(s) 186
BsiHKAI GWGCWC 3 cut(s) 297, 423, 554
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 2 cut(s) 711, 1290
BsmAI GTCTC 2 cut(s) 333, 944
BsmFI GGGAC 2 cut(s) 711, 1290
BsmI GAATGC 2 cut(s) 533, 1145
BsnI GGCC 3 cut(s) 116, 185, 194
Bso31I GGTCTC 1 cut(s) 333
Bsp1286I GDGCHC 4 cut(s) 150, 297, 423, 554
Bsp1407I TGTACA 1 cut(s) 1407
Bsp143I GATC 2 cut(s) 259, 644
BspACI CCGC 7 cut(s) 159, 199, 392, 399, 692, 1070, 1503
BspANI GGCC 3 cut(s) 116, 185, 194
BspCNI CTCAG 1 cut(s) 940
BspFNI CGCG 4 cut(s) 20, 218, 233, 377
BspLI GGNNCC 3 cut(s) 470, 646, 1511
BspMAI CTGCAG 1 cut(s) 1354
BspMI ACCTGC 2 cut(s) 84, 1497
BspPI GGATC 3 cut(s) 267, 639, 652
BspT107I GGYRCC 1 cut(s) 468
BspTNI GGTCTC 1 cut(s) 333
BsrDI GCAATG 2 cut(s) 678, 1176
BsrFI RCCGGY 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 1407
BsrI ACTGG 2 cut(s) 498, 777
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 1320, 1377
BssMI GATC 2 cut(s) 259, 644
BssNI GRCGYC 2 cut(s) 288, 721
BssSI CACGAG 2 cut(s) 296, 416
BssT1I CCWWGG 1 cut(s) 1377
Bst2BI CACGAG 2 cut(s) 296, 416
Bst2UI CCWGG 4 cut(s) 113, 203, 344, 1445
Bst4CI ACNGT 4 cut(s) 463, 750, 970, 1135
Bst6I CTCTTC 4 cut(s) 252, 481, 915, 1392
BstACI GRCGYC 2 cut(s) 288, 721
BstAPI GCANNNNNTGC 4 cut(s) 563, 809, 1178, 1337
BstAUI TGTACA 1 cut(s) 1407
BstC8I GCNNGC 7 cut(s) 183, 235, 270, 550, 568, 835, 1170
BstDEI CTNAG 4 cut(s) 840, 948, 1006, 1289
BstDSI CCRYGG 1 cut(s) 1320
BstEII GGTNACC 1 cut(s) 394
BstF5I GGATG 3 cut(s) 309, 1114, 1225
BstFNI CGCG 4 cut(s) 20, 218, 233, 377
BstHHI GCGC 6 cut(s) 22, 233, 377, 413, 542, 814
BstKTI GATC 2 cut(s) 262, 647
BstMAI GTCTC 2 cut(s) 333, 944
BstMBI GATC 2 cut(s) 259, 644
BstMCI CGRYCG 1 cut(s) 186
BstNI CCWGG 4 cut(s) 113, 203, 344, 1445
BstPI GGTNACC 1 cut(s) 394
BstSCI CCNGG 4 cut(s) 111, 201, 342, 1443
BstSFI CTRYAG 1 cut(s) 1350
BstUI CGCG 4 cut(s) 20, 218, 233, 377
BstV1I GCAGC 4 cut(s) 165, 815, 1364, 1459
BstV2I GAAGAC 2 cut(s) 49, 55
BstX2I RGATCY 2 cut(s) 259, 644
BstYI RGATCY 2 cut(s) 259, 644
BstZI CGGCCG 1 cut(s) 183
BsuI GTATCC 1 cut(s) 939
BsuRI GGCC 3 cut(s) 116, 185, 194
BtgI CCRYGG 1 cut(s) 1320
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 3 cut(s) 309, 1114, 1225
BtsIMutI CAGTG 3 cut(s) 1029, 1131, 1306
BveI ACCTGC 2 cut(s) 84, 1497
Cac8I GCNNGC 7 cut(s) 183, 235, 270, 550, 568, 835, 1170
CfoI GCGC 6 cut(s) 22, 233, 377, 413, 542, 814
Cfr10I RCCGGY 1 cut(s) 181
CseI GACGC 2 cut(s) 296, 710
Csp6I GTAC 5 cut(s) 600, 979, 1408, 1414, 1465
CspCI CAANNNNNGTGG 2 cut(s) 1309, 1344
CviAII CATG 2 cut(s) 175, 588
CviQI GTAC 5 cut(s) 600, 979, 1408, 1414, 1465
DdeI CTNAG 4 cut(s) 840, 948, 1006, 1289
DpnI GATC 2 cut(s) 261, 646
DpnII GATC 2 cut(s) 259, 644
EaeI YGGCCR 2 cut(s) 183, 192
EagI CGGCCG 1 cut(s) 183
Eam1104I CTCTTC 4 cut(s) 252, 481, 915, 1392
EarI CTCTTC 4 cut(s) 252, 481, 915, 1392
EclXI CGGCCG 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 1377
Eco147I AGGCCT 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 1403
Eco52I CGGCCG 1 cut(s) 183
Eco91I GGTNACC 1 cut(s) 394
EcoO65I GGTNACC 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 1255
EcoRII CCWGG 4 cut(s) 111, 201, 342, 1443
EcoRV GATATC 1 cut(s) 1403
EcoT14I CCWWGG 1 cut(s) 1377
EcoT22I ATGCAT 1 cut(s) 533
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 1377
FaeI CATG 2 cut(s) 178, 591
FaqI GGGAC 2 cut(s) 711, 1290
FatI CATG 2 cut(s) 174, 587
FblI GTMKAC 2 cut(s) 72, 688
Fnu4HI GCNGC 6 cut(s) 159, 179, 804, 1353, 1473, 1504
FokI GGATG 3 cut(s) 296, 1121, 1212
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 6 cut(s) 159, 179, 804, 1353, 1473, 1504
FspBI CTAG 2 cut(s) 516, 1500
GlaI GCGC 6 cut(s) 21, 232, 376, 412, 541, 813
GluI GCNGC 6 cut(s) 159, 179, 804, 1353, 1473, 1504
GsaI CCCAGC 2 cut(s) 698, 1185
GsuI CTGGAG 1 cut(s) 1504
HaeIII GGCC 3 cut(s) 116, 185, 194
HapII CCGG 1 cut(s) 182
HgaI GACGC 2 cut(s) 296, 710
HhaI GCGC 6 cut(s) 22, 233, 377, 413, 542, 814
Hin1I GRCGYC 2 cut(s) 288, 721
Hin1II CATG 2 cut(s) 178, 591
Hin6I GCGC 6 cut(s) 20, 231, 375, 411, 540, 812
HinP1I GCGC 6 cut(s) 20, 231, 375, 411, 540, 812
HinfI GANTC 5 cut(s) 426, 699, 1002, 1306, 1382
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 3 cut(s) 73, 689, 1465
Hpy188I TCNGA 4 cut(s) 252, 425, 580, 1230
Hpy188III TCNNGA 3 cut(s) 611, 821, 1084
Hpy8I GTNNAC 3 cut(s) 73, 689, 1465
Hpy99I CGWCG 6 cut(s) 35, 104, 137, 140, 158, 191
HpyAV CCTTC 6 cut(s) 250, 325, 329, 442, 874, 1172
HpyCH4III ACNGT 4 cut(s) 463, 750, 970, 1135
HpyCH4IV ACGT 3 cut(s) 189, 575, 1457
HpyF3I CTNAG 4 cut(s) 840, 948, 1006, 1289
HpySE526I ACGT 3 cut(s) 189, 575, 1457
Hsp92I GRCGYC 2 cut(s) 288, 721
Hsp92II CATG 2 cut(s) 178, 591
HspAI GCGC 6 cut(s) 20, 231, 375, 411, 540, 812
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 2 cut(s) 259, 644
LmnI GCTCC 2 cut(s) 1298, 1322
Lsp1109I GCAGC 4 cut(s) 165, 815, 1364, 1459
LweI GCATC 3 cut(s) 57, 799, 1182
MaeI CTAG 2 cut(s) 516, 1500
MaeII ACGT 3 cut(s) 189, 575, 1457
MaeIII GTNAC 3 cut(s) 394, 744, 1370
MalI GATC 2 cut(s) 261, 646
MboI GATC 2 cut(s) 259, 644
MflI RGATCY 2 cut(s) 259, 644
MhlI GDGCHC 4 cut(s) 150, 297, 423, 554
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 9 cut(s) 85, 128, 509, 893, 1205, 1221, 1255, 1395, 1428
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 1 cut(s) 693
MmeI TCCRAC 2 cut(s) 337, 622
MnlI CCTC 6 cut(s) 26, 53, 482, 916, 942, 1077
Mox20I TGGCCA 1 cut(s) 194
Mph1103I ATGCAT 1 cut(s) 533
MroNI GCCGGC 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 1386
MscI TGGCCA 1 cut(s) 194
MseI TTAA 1 cut(s) 1269
MslI CAYNNNNRTG 1 cut(s) 1301
Msp20I TGGCCA 1 cut(s) 194
MspA1I CMGCKG 2 cut(s) 694, 806
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 4 cut(s) 113, 203, 344, 1445
Mva1269I GAATGC 2 cut(s) 533, 1145
MvaI CCWGG 4 cut(s) 113, 203, 344, 1445
MvnI CGCG 4 cut(s) 20, 218, 233, 377
NaeI GCCGGC 1 cut(s) 183
NdeII GATC 2 cut(s) 259, 644
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 2 cut(s) 178, 591
NlaIV GGNNCC 3 cut(s) 470, 646, 1511
NmuCI GTSAC 3 cut(s) 394, 744, 1370
NsiI ATGCAT 1 cut(s) 533
PceI AGGCCT 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PctI GAATGC 2 cut(s) 533, 1145
PdiI GCCGGC 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 1386
PfeI GAWTC 4 cut(s) 426, 1002, 1306, 1382
PkrI GCNGC 6 cut(s) 160, 180, 805, 1354, 1474, 1505
PleI GAGTC 1 cut(s) 693
PpsI GAGTC 1 cut(s) 693
PsiI TTATAA 1 cut(s) 225
Psp6I CCWGG 4 cut(s) 111, 201, 342, 1443
PspEI GGTNACC 1 cut(s) 394
PspFI CCCAGC 2 cut(s) 694, 1181
PspGI CCWGG 4 cut(s) 111, 201, 342, 1443
PspN4I GGNNCC 3 cut(s) 470, 646, 1511
PsrI GAACNNNNNNTAC 4 cut(s) 101, 133, 1406, 1438
PstI CTGCAG 1 cut(s) 1354
PsuI RGATCY 2 cut(s) 259, 644
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 5 cut(s) 601, 980, 1409, 1415, 1466
RsaNI GTAC 5 cut(s) 600, 979, 1408, 1414, 1465
RseI CAYNNNNRTG 1 cut(s) 1301
SaqAI TTAA 1 cut(s) 1269
SatI GCNGC 6 cut(s) 159, 179, 804, 1353, 1473, 1504
Sau3AI GATC 2 cut(s) 259, 644
SchI GAGTC 1 cut(s) 693
ScrFI CCNGG 4 cut(s) 113, 203, 344, 1445
SduI GDGCHC 4 cut(s) 150, 297, 423, 554
SfaNI GCATC 3 cut(s) 57, 799, 1182
SfcI CTRYAG 1 cut(s) 1350
SfiI GGCCNNNNNGGCC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 1301
SmlI CTYRAG 2 cut(s) 933, 1341
SmoI CTYRAG 2 cut(s) 933, 1341
Sse9I AATT 9 cut(s) 85, 128, 509, 893, 1205, 1221, 1255, 1395, 1428
SseBI AGGCCT 1 cut(s) 116
SsiI CCGC 7 cut(s) 159, 199, 392, 399, 692, 1070, 1503
SspI AATATT 1 cut(s) 1365
SspMI CTAG 2 cut(s) 516, 1500
StuI AGGCCT 1 cut(s) 116
StyD4I CCNGG 4 cut(s) 111, 201, 342, 1443
StyI CCWWGG 1 cut(s) 1377
TaaI ACNGT 4 cut(s) 463, 750, 970, 1135
TaiI ACGT 3 cut(s) 192, 578, 1460
TaqI TCGA 1 cut(s) 1187
TaqII GACCGA 1 cut(s) 732
TasI AATT 9 cut(s) 85, 128, 509, 893, 1205, 1221, 1255, 1395, 1428
TatI WGTACW 3 cut(s) 1407, 1413, 1464
TauI GCSGC 2 cut(s) 161, 1506
TfiI GAWTC 4 cut(s) 426, 1002, 1306, 1382
Tru1I TTAA 1 cut(s) 1269
Tru9I TTAA 1 cut(s) 1269
TscAI CASTG 3 cut(s) 1029, 1138, 1306
TseFI GTSAC 3 cut(s) 394, 744, 1370
TseI GCWGC 4 cut(s) 178, 803, 1352, 1472
Tsp45I GTSAC 3 cut(s) 394, 744, 1370
TspGWI ACGGA 3 cut(s) 142, 379, 637
TspRI CASTG 3 cut(s) 1029, 1138, 1306
XapI RAATTY 2 cut(s) 128, 1255
XmiI GTMKAC 2 cut(s) 72, 688
XmnI GAANNNNTTC 1 cut(s) 1386
XspI CTAG 2 cut(s) 516, 1500
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.