Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001521

Physical Location & Seq

Genomic Coordinates Reverse (-)

4587451 .. 4590935

Gene Structure 3485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0061700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCAGTTTATACAACTTGATGAAGGGTTGGTGATTATAGAAGAGGCGTTTCAGAAAGCAAAGAGGATTGTGGAAGGATACCCTGACACAAAGTTCACCTCTGAAGAATATATGAAGTTCCATGCATGTGTTTATACTTTGTGCTATAAACCTGGGGATGACAACAAGGCGTTGCTCCACGAAAAATTTAAGAAGAGCTTGGAAGAGACCATTAATTCCACGGTACTGCCATCTTTAGCAGCCAAAGAAAATGAACTTCTGTTGAGGGAACTTGTGCTGATGTGGTCAAATTACAAGTTAATGGCTAAGTGGTTATGTAGATTCTTTGAATATCTTGACCGCTATTATAGCAGTTTTTGTTGTGGTGTTTCACTTGGTGAGACCTCGATTGATTGCTTCCGCAGTATGGTCTTCAACGTGTTGCATAGTAGAATTCAGGCAGCAGCAATGTCTTTGATTAATGAAGAGCGTCATGGGAAGCAGATTGATCCAAAGCTGCTGCAAGATGTCATGAGTATCTTTATGGAAATTGGCGAAAACAGATCAACATCATATTATGAAAACTTTGTACAGGCTATGCTTGAAGAAACTGCCACTTTCTACTCCCAATCATCTTCTCAGTGGGTGGTTTATGACTCGTTGACCGATTATATTCAGAAGGTGAACTGGTGCATAATGCAGGAAAAAGAAAGAGCTGGCCACTATCTACATCCCACATCCGTGATAAAATTAATACAGTTGCTGGATATGAACGCACTTAAATTGGTTGAAAAGCTACAGTCTCAGAACTCCAGTCAACTGGATTATCAGGAGATATTGTCAAAATGTGCCTGCTTAAGTCTCGGAGAGGAAAGCTCTGCACCAACTCTCGCGGAACATCTTTCTGCTTTAATGGCAAAATCAGCTCATATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

305

Amino Acids

35.2

Weight (kDa)

5.44

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	30 - 254	3.2e-42	Cullin alpha solenoid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01450
fragaria_vesca	FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430
malus_domestica	MD03G1070000.v1.1 MD04G1153100.v1.1 MD11G1073800.v1.1 MD12G1166600.v1.1
prunus_persica	Prupe.6G057100_v2.0.a1 Prupe.6G057100_v2.0.a1 Prupe.6G277400_v2.0.a1 Prupe.6G277400_v2.0.a1
pyrus_communis	pycom03g05570 pycom11g06120 pycom12g15850
rosa_chinensis	RchiOBHm_Chr3g0463121 RchiOBHm_Chr5g0069661
rosa_laevigata	RLG00000024811 RLG00000036082
rosa_multiflora	Rmu_sc0000738.1_g000037 Rmu_sc0000766.1_g000040 Rmu_sc0008595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011420 Rroxscaffold_6G00416950
rosa_rugosa	Rorug03G0061500 Rorug03G0061600 Rorug03G0061700 Rorug05G0399000 Rorug05G0399100
rosa_samantha	Rh3AG119800 Rh3BG124200 Rh3CG126200 Rh3DG125200 Rh5AG455800 Rh5BG474800 Rh5CG498200 Rh5DG486300
rosa_wichuraiana	Rw3G010130 Rw5G042530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	872
AciI	CCGC	3 cut(s)	340, 400, 872
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	697
AcsI	RAATTY	2 cut(s)	185, 432
AcuI	CTGAAG	1 cut(s)	123
AdeI	CACNNNGTG	1 cut(s)	377
AfaI	GTAC	2 cut(s)	225, 570
AfiI	CCNNNNNNNGG	1 cut(s)	406
AflII	CTTAAG	1 cut(s)	835
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	4 cut(s)	329, 415, 584, 770
AjnI	CCWGG	1 cut(s)	151
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	6 cut(s)	198, 496, 695, 775, 855, 905
AluI	AGCT	6 cut(s)	198, 496, 695, 775, 855, 905
Alw26I	GTCTC	4 cut(s)	200, 374, 786, 845
AlwI	GGATC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	742
AoxI	GGCC	1 cut(s)	697
ApeKI	GCWGC	5 cut(s)	239, 440, 443, 496, 499
ApoI	RAATTY	2 cut(s)	185, 432
AseI	ATTAAT	3 cut(s)	213, 459, 731
AsuHPI	GGTGA	4 cut(s)	43, 88, 389, 673
BalI	TGGCCA	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	403
BbvI	GCAGC	5 cut(s)	251, 452, 455, 483, 486
BccI	CCATC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	153
BciVI	GTATCC	1 cut(s)	71
BcoDI	GTCTC	4 cut(s)	200, 374, 786, 845
BfmI	CTRYAG	1 cut(s)	776
BfrI	CTTAAG	1 cut(s)	835
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	5 cut(s)	240, 441, 444, 497, 500
BlsI	GCNGC	5 cut(s)	241, 442, 445, 498, 501
Bme1390I	CCNGG	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	403
BplI	GAGNNNNNCTC	2 cut(s)	839, 871
BpmI	CTGGAG	1 cut(s)	775
BsaBI	GATNNNNATC	1 cut(s)	547
BsaI	GGTCTC	2 cut(s)	200, 374
BsaJI	CCNNGG	2 cut(s)	152, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	3 cut(s)	671, 792, 804
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	547
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	152, 219
BseGI	GGATG	3 cut(s)	163, 709, 716
BseJI	GATNNNNATC	1 cut(s)	547
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	2 cut(s)	632, 797
BseNI	ACTGG	3 cut(s)	671, 792, 804
BseXI	GCAGC	5 cut(s)	251, 452, 455, 483, 486
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	872
BshFI	GGCC	1 cut(s)	699
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	4 cut(s)	200, 374, 786, 845
BsnI	GGCC	1 cut(s)	699
Bso31I	GGTCTC	2 cut(s)	200, 374
Bsp1407I	TGTACA	1 cut(s)	568
Bsp143I	GATC	2 cut(s)	487, 542
BspACI	CCGC	3 cut(s)	340, 400, 872
BspANI	GGCC	1 cut(s)	699
BspCNI	CTCAG	2 cut(s)	631, 796
BspFNI	CGCG	1 cut(s)	872
BspHI	TCATGA	1 cut(s)	510
BspPI	GGATC	1 cut(s)	482
BspQI	GCTCTTC	2 cut(s)	188, 459
BspTI	CTTAAG	1 cut(s)	835
BspTNI	GGTCTC	2 cut(s)	200, 374
BsrDI	GCAATG	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	568
BsrI	ACTGG	3 cut(s)	671, 792, 804
BssECI	CCNNGG	2 cut(s)	152, 219
BssMI	GATC	2 cut(s)	487, 542
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	223, 738, 780
Bst6I	CTCTTC	4 cut(s)	36, 188, 198, 459
BstAFI	CTTAAG	1 cut(s)	835
BstAUI	TGTACA	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	697, 832
BstDEI	CTNAG	3 cut(s)	306, 618, 783
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	163, 709, 716
BstFNI	CGCG	1 cut(s)	872
BstKTI	GATC	2 cut(s)	490, 545
BstMAI	GTCTC	4 cut(s)	200, 374, 786, 845
BstMBI	GATC	2 cut(s)	487, 542
BstMWI	GCNNNNNNNGC	3 cut(s)	348, 893, 902
BstNI	CCWGG	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	776
BstUI	CGCG	1 cut(s)	872
BstV1I	GCAGC	5 cut(s)	251, 452, 455, 483, 486
BstV2I	GAAGAC	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	799
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	699
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	3 cut(s)	163, 709, 716
BtsIMutI	CAGTG	1 cut(s)	626
Cac8I	GCNNGC	2 cut(s)	697, 832
CaiI	CAGNNNCTG	1 cut(s)	742
CciI	TCATGA	1 cut(s)	510
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	224, 569
CviAII	CATG	4 cut(s)	122, 126, 473, 511
CviQI	GTAC	2 cut(s)	224, 569
DdeI	CTNAG	3 cut(s)	306, 618, 783
DpnI	GATC	2 cut(s)	489, 544
DpnII	GATC	2 cut(s)	487, 542
DraIII	CACNNNGTG	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	697
Eam1104I	CTCTTC	4 cut(s)	36, 188, 198, 459
EarI	CTCTTC	4 cut(s)	36, 188, 198, 459
Eco31I	GGTCTC	2 cut(s)	200, 374
Eco57I	CTGAAG	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	127
FaeI	CATG	4 cut(s)	125, 129, 476, 514
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	4 cut(s)	121, 125, 472, 510
Fnu4HI	GCNGC	5 cut(s)	240, 441, 444, 497, 500
FokI	GGATG	3 cut(s)	170, 696, 703
Fsp4HI	GCNGC	5 cut(s)	240, 441, 444, 497, 500
GluI	GCNGC	5 cut(s)	240, 441, 444, 497, 500
GsuI	CTGGAG	1 cut(s)	775
HaeIII	GGCC	1 cut(s)	699
HgaI	GACGC	1 cut(s)	458
Hin1II	CATG	4 cut(s)	125, 129, 476, 514
HincII	GTYRAC	2 cut(s)	642, 797
HindII	GTYRAC	2 cut(s)	642, 797
HinfI	GANTC	2 cut(s)	321, 635
HphI	GGTGA	4 cut(s)	43, 88, 389, 673
Hpy166II	GTNNAC	4 cut(s)	96, 642, 664, 797
Hpy188I	TCNGA	5 cut(s)	54, 103, 657, 786, 845
Hpy188III	TCNNGA	3 cut(s)	335, 511, 809
Hpy8I	GTNNAC	4 cut(s)	96, 642, 664, 797
HpyAV	CCTTC	3 cut(s)	17, 68, 652
HpyCH4III	ACNGT	3 cut(s)	223, 738, 780
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	7 cut(s)	4, 125, 424, 502, 672, 679, 860
HpyF10VI	GCNNNNNNNGC	3 cut(s)	348, 893, 902
HpyF3I	CTNAG	3 cut(s)	306, 618, 783
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	4 cut(s)	125, 129, 476, 514
Kzo9I	GATC	2 cut(s)	487, 542
LguI	GCTCTTC	2 cut(s)	188, 459
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	5 cut(s)	251, 452, 455, 483, 486
MaeII	ACGT	1 cut(s)	417
MalI	GATC	2 cut(s)	489, 544
MboI	GATC	2 cut(s)	487, 542
MboII	GAAGA	8 cut(s)	53, 116, 205, 215, 403, 476, 596, 606
MlsI	TGGCCA	1 cut(s)	699
MluCI	AATT	7 cut(s)	185, 214, 289, 432, 528, 728, 761
MluNI	TGGCCA	1 cut(s)	699
MlyI	GAGTC	1 cut(s)	629
MnlI	CCTC	6 cut(s)	37, 57, 109, 258, 394, 841
Mox20I	TGGCCA	1 cut(s)	699
Mph1103I	ATGCAT	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	699
MseI	TTAA	8 cut(s)	189, 213, 299, 459, 731, 759, 836, 890
MslI	CAYNNNNRTG	2 cut(s)	126, 719
Msp20I	TGGCCA	1 cut(s)	699
MspCI	CTTAAG	1 cut(s)	835
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	872
MwoI	GCNNNNNNNGC	3 cut(s)	348, 893, 902
NdeII	GATC	2 cut(s)	487, 542
NlaIII	CATG	4 cut(s)	125, 129, 476, 514
NsiI	ATGCAT	1 cut(s)	127
NspI	RCATGY	1 cut(s)	129
OliI	CACNNNNGTG	1 cut(s)	719
PagI	TCATGA	1 cut(s)	510
PciSI	GCTCTTC	2 cut(s)	188, 459
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	241, 442, 445, 498, 501
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
PshBI	ATTAAT	3 cut(s)	213, 459, 731
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	742
RsaI	GTAC	2 cut(s)	225, 570
RsaNI	GTAC	2 cut(s)	224, 569
RseI	CAYNNNNRTG	2 cut(s)	126, 719
SapI	GCTCTTC	2 cut(s)	188, 459
SaqAI	TTAA	8 cut(s)	189, 213, 299, 459, 731, 759, 836, 890
SatI	GCNGC	5 cut(s)	240, 441, 444, 497, 500
Sau3AI	GATC	2 cut(s)	487, 542
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	776
SmiMI	CAYNNNNRTG	2 cut(s)	126, 719
SmlI	CTYRAG	1 cut(s)	835
SmoI	CTYRAG	1 cut(s)	835
Sse9I	AATT	7 cut(s)	185, 214, 289, 432, 528, 728, 761
SsiI	CCGC	3 cut(s)	340, 400, 872
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	3 cut(s)	223, 738, 780
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	386
TaqII	GACCGA	1 cut(s)	659
TasI	AATT	7 cut(s)	185, 214, 289, 432, 528, 728, 761
TatI	WGTACW	1 cut(s)	568
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	8 cut(s)	189, 213, 299, 459, 731, 759, 836, 890
Tru9I	TTAA	8 cut(s)	189, 213, 299, 459, 731, 759, 836, 890
TscAI	CASTG	1 cut(s)	626
TseI	GCWGC	5 cut(s)	239, 440, 443, 496, 499
TspDTI	ATGAA	7 cut(s)	36, 128, 267, 477, 573, 764, 902
TspGWI	ACGGA	1 cut(s)	709
TspRI	CASTG	1 cut(s)	626
Vha464I	CTTAAG	1 cut(s)	835
VspI	ATTAAT	3 cut(s)	213, 459, 731
XapI	RAATTY	2 cut(s)	185, 432
XceI	RCATGY	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.