Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001521

Physical Location & Seq

Genomic Coordinates Forward (+)

39278796 .. 39282489

Gene Structure 3694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024811

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGAAGAGCCTCAGACTTCTTCTTCTTCTTCTTCTTCTGCGTCTTCCTCCTCCTCTCCGTCTACTTCTACTGATGCTGTCATCCGTAGGGACACTACTACTTCCGGCGCCGGCGCCTCGTCTTCCAGCACTTCGCACGTCCGCGAAGAGGAGGACGATCACAATCAGTACCACCACCACCACAATTTCCGGCATCCGGAGCCGCGGGTCAACGAAATCGGAACTTCTTACAGAGTAGGTTTATCGGGATTCGATGAGACCGCGTCTGTGGTTAGAGATGACACGTGGTCCTGCATCATCGTCCTCCTCACCTTCTGGTTCTTTGTATCTATGACTTTGATTCTGGGAGTGTACGGGTCTGAGACCTTAGAGCTTGGCCCTAATACTTCGACTCTTCTGCAACCTAACCCCATATTTGTGCAGTCTATAAAGGTGGAAGAGCTGAATATATCAAACCCTGGGCCTGTGCTATATGGTTTCTATAGTGTTCCACCGCTTAATACTGTGACGACTTGGTCAGAAACACACAGTGCCTCTGTTCCAGCTGATTCTCATAAGGAGTGGATATATTACCTAAATAAGGGGTCTCAAATAAGTATATCGTACAGCGTTTCCTCTCCCGGCACATCTATTTTTCTTATAATTGCTCAAGGTAAAGAAGGCCTTGCTCAGTGGCTTGAAGAACCAACATATCCTAATACTACATTGTCATGGAACCTCGTTCATGGAAGTGGCAAGATTCAGCAGGACATATCAACGTCTTATAGTTACTATATTTCTGTGGGTAACCTGAACTATGAGGATGTGGAGGTGCAATTAAACTTAACAGTGAGTGCTTTGTTGTATGATACAAGTGAAGCTTATTACAAGTGTACCTTCACAGATACGTCCTGTAGTTTGAAAATTTTGTTTCCCAGTGGAAATGTTGGTGTGCTAACCTCTCCTGGTCCAGATCAGGGTATAGACAACCAGTATGTCAAACTGTCATATGGACCAAGATGGGCCACATATATTATTGGTATAGGAGCGATGACTGTACTGATGTTATTGGCCTTCAACTTCTTGAACAAGTTCCGCTGTAACAACGAAGATGGAATAAGAGTACAGCATGATGAGTTCCGACCGGAAAGAGCCCCGTTGCTTTCATACAAAGATGATGATCAATCAAGTTGGGGTTCATCTTATGATTCTGCCTCCAACGATGAGGGGGATCTTGAAGACCTTATGGCAACAGGTTCTCTTGATGGAAAGTCACTAAGAGATGGTGAAAGTAACAATACTCGTCGGCTTTGTGCAATTTGCTTTGATGCTCCTAGGGACTGCTTTTTCCTCCCATGCGGGCACTGTGTGGCTTGTTTTGAATGCGCAACAAGGATAGCAGAAGCTGCTGCTACTTGTCCAATTTGTCGGAGGAACATAAAGAAGGTGAGGAAGATTTTTACAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

483

Amino Acids

53.19

Weight (kDa)

4.94

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APD1-4_N	PF16040	154 - 222	2.9e-25	E3 ubiquitin-protein ligase APD1-4, N-terminal
APD1-4_M	PF16041	246 - 350	1.4e-31	E3 ubiquitin-protein ligase APD1-4, middle domain
zf-C3HC4_3	PF13920	428 - 476	4.7e-14	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	430 - 470	2.4e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01450
fragaria_vesca	FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430
malus_domestica	MD03G1070000.v1.1 MD04G1153100.v1.1 MD11G1073800.v1.1 MD12G1166600.v1.1
prunus_persica	Prupe.6G057100_v2.0.a1 Prupe.6G057100_v2.0.a1 Prupe.6G277400_v2.0.a1 Prupe.6G277400_v2.0.a1
pyrus_communis	pycom03g05570 pycom11g06120 pycom12g15850
rosa_chinensis	RchiOBHm_Chr3g0463121 RchiOBHm_Chr5g0069661
rosa_laevigata	RLG00000024811 RLG00000036082
rosa_multiflora	Rmu_sc0000738.1_g000037 Rmu_sc0000766.1_g000040 Rmu_sc0008595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011420 Rroxscaffold_6G00416950
rosa_rugosa	Rorug03G0061500 Rorug03G0061600 Rorug03G0061700 Rorug05G0399000 Rorug05G0399100
rosa_samantha	Rh3AG119800 Rh3BG124200 Rh3CG126200 Rh3DG125200 Rh5AG455800 Rh5BG474800 Rh5CG498200 Rh5DG486300
rosa_wichuraiana	Rw3G010130 Rw5G042530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	641
AasI	GACNNNNNNGTC	1 cut(s)	514
Acc16I	TGCGCA	1 cut(s)	1366
AccB1I	GGYRCC	2 cut(s)	107, 113
AccI	GTMKAC	1 cut(s)	62
AccII	CGCG	3 cut(s)	144, 205, 263
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	7 cut(s)	142, 203, 205, 261, 494, 1075, 1338
AclWI	GGATC	1 cut(s)	1218
AcsI	RAATTY	1 cut(s)	903
AcvI	CACGTG	1 cut(s)	285
AcyI	GRCGYC	2 cut(s)	108, 114
AdeI	CACNNNGTG	2 cut(s)	530, 1348
AfaI	GTAC	6 cut(s)	170, 353, 605, 874, 1038, 1104
AfiI	CCNNNNNNNGG	4 cut(s)	148, 196, 580, 956
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	6 cut(s)	680, 901, 1057, 1066, 1217, 1361
AhdI	GACNNNNNGTC	1 cut(s)	286
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	457, 943
AluBI	AGCT	5 cut(s)	373, 442, 545, 860, 1385
AluI	AGCT	5 cut(s)	373, 442, 545, 860, 1385
Alw26I	GTCTC	3 cut(s)	251, 356, 591
AlwI	GGATC	1 cut(s)	1218
AlwNI	CAGNNNCTG	1 cut(s)	1385
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	5 cut(s)	376, 461, 661, 1002, 1050
ApeKI	GCWGC	2 cut(s)	1385, 1388
ApoI	RAATTY	1 cut(s)	903
Asp700I	GAANNNNTTC	1 cut(s)	1070
AspA2I	CCTAGG	1 cut(s)	1313
AspLEI	GCGC	3 cut(s)	110, 116, 1367
AspS9I	GGNCC	6 cut(s)	288, 377, 461, 947, 992, 1002
AsuC2I	CCSGG	1 cut(s)	621
AsuHPI	GGTGA	3 cut(s)	301, 1277, 1438
AvaII	GGWCC	3 cut(s)	288, 947, 992
AvrII	CCTAGG	1 cut(s)	1313
BaeGI	GKGCMC	1 cut(s)	1344
BaeI	ACNNNNGTAYC	2 cut(s)	856, 889
BanI	GGYRCC	2 cut(s)	107, 113
BanII	GRGCYC	1 cut(s)	1135
BbrPI	CACGTG	1 cut(s)	285
BbsI	GAAGAC	3 cut(s)	36, 114, 1224
BbvI	GCAGC	2 cut(s)	1372, 1375
BccI	CCATC	4 cut(s)	993, 1085, 1238, 1256
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciT130I	CCWGG	2 cut(s)	459, 945
BclI	TGATCA	1 cut(s)	1159
BcnI	CCSGG	1 cut(s)	621
BcoDI	GTCTC	3 cut(s)	251, 356, 591
BfaI	CTAG	1 cut(s)	1314
BfmI	CTRYAG	2 cut(s)	481, 892
BfoI	RGCGCY	2 cut(s)	111, 117
BisI	GCNGC	3 cut(s)	203, 1386, 1389
BlnI	CCTAGG	1 cut(s)	1313
BlsI	GCNGC	3 cut(s)	204, 1387, 1390
Bme1390I	CCNGG	3 cut(s)	459, 621, 945
Bme18I	GGWCC	3 cut(s)	288, 947, 992
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	6 cut(s)	288, 377, 461, 947, 992, 1002
BmiI	GGNNCC	4 cut(s)	109, 115, 201, 716
BmrFI	CCNGG	3 cut(s)	459, 621, 945
BmrI	ACTGGG	1 cut(s)	909
BmsI	GCATC	4 cut(s)	64, 202, 303, 1297
BmuI	ACTGGG	1 cut(s)	909
BpiI	GAAGAC	3 cut(s)	36, 114, 1224
BpuEI	CTTGAG	1 cut(s)	633
BpuMI	CCSGG	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	285
BsaBI	GATNNNNATC	2 cut(s)	162, 1158
BsaHI	GRCGYC	2 cut(s)	108, 114
BsaI	GGTCTC	3 cut(s)	251, 356, 591
BsaJI	CCNNGG	4 cut(s)	203, 457, 458, 1313
BsaWI	WCCGGW	2 cut(s)	196, 1123
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 196, 580, 956
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	915, 970
Bse8I	GATNNNNATC	2 cut(s)	162, 1158
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	459, 945
BseDI	CCNNGG	4 cut(s)	203, 457, 458, 1313
BseGI	GGATG	3 cut(s)	81, 193, 808
BseJI	GATNNNNATC	2 cut(s)	162, 1158
BseLI	CCNNNNNNNGG	4 cut(s)	148, 196, 580, 956
BseMII	CTCAG	3 cut(s)	26, 351, 683
BseNI	ACTGG	2 cut(s)	915, 970
BseRI	GAGGAG	4 cut(s)	40, 43, 164, 296
BseSI	GKGCMC	1 cut(s)	1344
BseXI	GCAGC	2 cut(s)	1372, 1375
BsgI	GTGCAG	1 cut(s)	440
Bsh1236I	CGCG	3 cut(s)	144, 205, 263
Bsh1285I	CGRYCG	1 cut(s)	1124
BshFI	GGCC	5 cut(s)	378, 463, 663, 1004, 1052
BshNI	GGYRCC	2 cut(s)	107, 113
BsiEI	CGRYCG	1 cut(s)	1124
BsiSI	CCGG	6 cut(s)	105, 111, 190, 197, 621, 1124
BslFI	GGGAC	2 cut(s)	104, 1331
BslI	CCNNNNNNNGG	4 cut(s)	148, 196, 580, 956
BsmAI	GTCTC	3 cut(s)	251, 356, 591
BsmFI	GGGAC	2 cut(s)	104, 1331
BsmI	GAATGC	1 cut(s)	1367
BsnI	GGCC	5 cut(s)	378, 463, 663, 1004, 1052
Bso31I	GGTCTC	3 cut(s)	251, 356, 591
Bsp1286I	GDGCHC	2 cut(s)	1135, 1344
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	157, 952, 1159, 1210
BspACI	CCGC	7 cut(s)	142, 203, 205, 261, 494, 1075, 1338
BspANI	GGCC	5 cut(s)	378, 463, 663, 1004, 1052
BspCNI	CTCAG	3 cut(s)	25, 352, 682
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	3 cut(s)	144, 205, 263
BspLI	GGNNCC	4 cut(s)	109, 115, 201, 716
BspPI	GGATC	1 cut(s)	1218
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	2 cut(s)	107, 113
BspTNI	GGTCTC	3 cut(s)	251, 356, 591
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	915, 970
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	4 cut(s)	203, 457, 458, 1313
BssMI	GATC	4 cut(s)	157, 952, 1159, 1210
BssNI	GRCGYC	2 cut(s)	108, 114
BssT1I	CCWWGG	1 cut(s)	1313
Bst2UI	CCWGG	2 cut(s)	459, 945
Bst4CI	ACNGT	7 cut(s)	505, 530, 829, 984, 1036, 1346, 1444
Bst6I	CTCTTC	3 cut(s)	141, 399, 432
BstACI	GRCGYC	2 cut(s)	108, 114
BstAPI	GCANNNNNTGC	1 cut(s)	1385
BstBAI	YACGTR	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	112, 1340
BstDEI	CTNAG	5 cut(s)	12, 360, 367, 669, 1256
BstDSI	CCRYGG	1 cut(s)	203
BstEII	GGTNACC	1 cut(s)	785
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	3 cut(s)	81, 193, 808
BstFNI	CGCG	3 cut(s)	144, 205, 263
BstH2I	RGCGCY	2 cut(s)	111, 117
BstHHI	GCGC	3 cut(s)	110, 116, 1367
BstKTI	GATC	4 cut(s)	160, 955, 1162, 1213
BstMAI	GTCTC	3 cut(s)	251, 356, 591
BstMBI	GATC	4 cut(s)	157, 952, 1159, 1210
BstMCI	CGRYCG	1 cut(s)	1124
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 1385
BstNI	CCWGG	2 cut(s)	459, 945
BstPI	GGTNACC	1 cut(s)	785
BstSCI	CCNGG	3 cut(s)	457, 619, 943
BstSFI	CTRYAG	2 cut(s)	481, 892
BstSLI	GKGCMC	1 cut(s)	1344
BstUI	CGCG	3 cut(s)	144, 205, 263
BstV1I	GCAGC	2 cut(s)	1372, 1375
BstV2I	GAAGAC	3 cut(s)	36, 114, 1224
BstX2I	RGATCY	1 cut(s)	1210
BstYI	RGATCY	1 cut(s)	1210
BsuRI	GGCC	5 cut(s)	378, 463, 663, 1004, 1052
BtgI	CCRYGG	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	1043
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	3 cut(s)	81, 193, 808
BtsIMutI	CAGTG	5 cut(s)	535, 677, 834, 922, 1342
Cac8I	GCNNGC	2 cut(s)	112, 1340
CaiI	CAGNNNCTG	1 cut(s)	1385
CfoI	GCGC	3 cut(s)	110, 116, 1367
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	6 cut(s)	288, 377, 461, 947, 992, 1002
Cfr42I	CCGCGG	1 cut(s)	206
CseI	GACGC	2 cut(s)	30, 252
Csp6I	GTAC	6 cut(s)	169, 352, 604, 873, 1037, 1103
CviAII	CATG	4 cut(s)	711, 725, 1109, 1335
CviQI	GTAC	6 cut(s)	169, 352, 604, 873, 1037, 1103
DdeI	CTNAG	5 cut(s)	12, 360, 367, 669, 1256
DinI	GGCGCC	2 cut(s)	109, 115
DpnI	GATC	4 cut(s)	159, 954, 1161, 1212
DpnII	GATC	4 cut(s)	157, 952, 1159, 1210
DraIII	CACNNNGTG	2 cut(s)	530, 1348
DrdI	GACNNNNNNGTC	1 cut(s)	514
DriI	GACNNNNNGTC	1 cut(s)	286
DseDI	GACNNNNNNGTC	1 cut(s)	514
Eam1104I	CTCTTC	3 cut(s)	141, 399, 432
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	3 cut(s)	141, 399, 432
Eco130I	CCWWGG	1 cut(s)	1313
Eco147I	AGGCCT	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	1135
Eco31I	GGTCTC	3 cut(s)	251, 356, 591
Eco47I	GGWCC	3 cut(s)	288, 947, 992
Eco72I	CACGTG	1 cut(s)	285
Eco91I	GGTNACC	1 cut(s)	785
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoO65I	GGTNACC	1 cut(s)	785
EcoRII	CCWGG	2 cut(s)	457, 943
EcoT14I	CCWWGG	1 cut(s)	1313
EcoT38I	GRGCYC	1 cut(s)	1135
EgeI	GGCGCC	2 cut(s)	109, 115
EheI	GGCGCC	2 cut(s)	109, 115
ErhI	CCWWGG	1 cut(s)	1313
FaeI	CATG	4 cut(s)	714, 728, 1112, 1338
FalI	AAGNNNNNCTT	6 cut(s)	648, 680, 844, 876, 860, 892
FaqI	GGGAC	2 cut(s)	104, 1331
FatI	CATG	4 cut(s)	710, 724, 1108, 1334
FauI	CCCGC	2 cut(s)	198, 1331
FauNDI	CATATG	1 cut(s)	988
FbaI	TGATCA	1 cut(s)	1159
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	3 cut(s)	203, 1386, 1389
FokI	GGATG	3 cut(s)	68, 180, 815
FriOI	GRGCYC	1 cut(s)	1135
Fsp4HI	GCNGC	3 cut(s)	203, 1386, 1389
FspBI	CTAG	1 cut(s)	1314
FspI	TGCGCA	1 cut(s)	1366
GlaI	GCGC	3 cut(s)	109, 115, 1366
GluI	GCNGC	3 cut(s)	203, 1386, 1389
HaeII	RGCGCY	2 cut(s)	111, 117
HaeIII	GGCC	5 cut(s)	378, 463, 663, 1004, 1052
HapII	CCGG	6 cut(s)	105, 111, 190, 197, 621, 1124
HgaI	GACGC	2 cut(s)	30, 252
HhaI	GCGC	3 cut(s)	110, 116, 1367
Hin1I	GRCGYC	2 cut(s)	108, 114
Hin1II	CATG	4 cut(s)	714, 728, 1112, 1338
Hin6I	GCGC	3 cut(s)	108, 114, 1365
HinP1I	GCGC	3 cut(s)	108, 114, 1365
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	858
HinfI	GANTC	6 cut(s)	249, 340, 391, 548, 739, 1187
HpaII	CCGG	6 cut(s)	105, 111, 190, 197, 621, 1124
HphI	GGTGA	3 cut(s)	301, 1277, 1438
Hpy166II	GTNNAC	4 cut(s)	63, 211, 352, 873
Hpy188I	TCNGA	6 cut(s)	15, 221, 361, 520, 1121, 1410
Hpy188III	TCNNGA	6 cut(s)	197, 246, 950, 1063, 1214, 1241
Hpy8I	GTNNAC	4 cut(s)	63, 211, 352, 873
Hpy99I	CGWCG	1 cut(s)	1287
HpyAV	CCTTC	5 cut(s)	322, 653, 886, 1063, 1417
HpyCH4III	ACNGT	7 cut(s)	505, 530, 829, 984, 1036, 1346, 1444
HpyCH4IV	ACGT	4 cut(s)	138, 284, 758, 887
HpyCH4V	TGCA	5 cut(s)	294, 400, 421, 814, 1295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 1385
HpyF3I	CTNAG	5 cut(s)	12, 360, 367, 669, 1256
HpySE526I	ACGT	4 cut(s)	138, 284, 758, 887
Hsp92I	GRCGYC	2 cut(s)	108, 114
Hsp92II	CATG	4 cut(s)	714, 728, 1112, 1338
HspAI	GCGC	3 cut(s)	108, 114, 1365
KasI	GGCGCC	2 cut(s)	107, 113
Kpn2I	TCCGGA	1 cut(s)	196
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	1159
KspI	CCGCGG	1 cut(s)	206
Kzo9I	GATC	4 cut(s)	157, 952, 1159, 1210
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	3 cut(s)	199, 1025, 1315
Lsp1109I	GCAGC	2 cut(s)	1372, 1375
LweI	GCATC	4 cut(s)	64, 202, 303, 1297
MaeI	CTAG	1 cut(s)	1314
MaeII	ACGT	4 cut(s)	138, 284, 758, 887
MaeIII	GTNAC	6 cut(s)	505, 767, 785, 1079, 1251, 1271
MalI	GATC	4 cut(s)	159, 954, 1161, 1212
MboI	GATC	4 cut(s)	157, 952, 1159, 1210
MflI	RGATCY	1 cut(s)	1210
MhlI	GDGCHC	2 cut(s)	1135, 1344
MluCI	AATT	6 cut(s)	184, 642, 815, 903, 1296, 1401
Mly113I	GGCGCC	2 cut(s)	108, 114
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	3 cut(s)	1144, 1221, 1388
MreI	CGCCGGCG	1 cut(s)	110
MroI	TCCGGA	1 cut(s)	196
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	1070
MseI	TTAA	3 cut(s)	498, 818, 824
MslI	CAYNNNNRTG	3 cut(s)	416, 709, 729
MspA1I	CMGCKG	3 cut(s)	205, 545, 1077
MspI	CCGG	6 cut(s)	105, 111, 190, 197, 621, 1124
MspR9I	CCNGG	3 cut(s)	459, 621, 945
Mva1269I	GAATGC	1 cut(s)	1367
MvaI	CCWGG	2 cut(s)	459, 945
MvnI	CGCG	3 cut(s)	144, 205, 263
MwoI	GCNNNNNNNGC	2 cut(s)	199, 1385
NaeI	GCCGGC	1 cut(s)	112
NarI	GGCGCC	2 cut(s)	108, 114
NciI	CCSGG	1 cut(s)	621
NdeI	CATATG	1 cut(s)	988
NdeII	GATC	4 cut(s)	157, 952, 1159, 1210
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	4 cut(s)	714, 728, 1112, 1338
NlaIV	GGNNCC	4 cut(s)	109, 115, 201, 716
NmuCI	GTSAC	2 cut(s)	505, 1251
NsbI	TGCGCA	1 cut(s)	1366
PasI	CCCWGGG	1 cut(s)	458
PceI	AGGCCT	1 cut(s)	663
PciSI	GCTCTTC	1 cut(s)	432
PctI	GAATGC	1 cut(s)	1367
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	1070
PfeI	GAWTC	5 cut(s)	249, 340, 548, 739, 1187
PflFI	GACNNNGTC	2 cut(s)	262, 514
PkrI	GCNGC	3 cut(s)	204, 1387, 1390
PleI	GAGTC	1 cut(s)	385
PluTI	GGCGCC	2 cut(s)	111, 117
PmaCI	CACGTG	1 cut(s)	285
PmlI	CACGTG	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	285
PsiI	TTATAA	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	457, 943
PspCI	CACGTG	1 cut(s)	285
PspEI	GGTNACC	1 cut(s)	785
PspGI	CCWGG	2 cut(s)	457, 943
PspN4I	GGNNCC	4 cut(s)	109, 115, 201, 716
PspPI	GGNCC	6 cut(s)	288, 377, 461, 947, 992, 1002
PstNI	CAGNNNCTG	1 cut(s)	1385
PsuI	RGATCY	1 cut(s)	1210
PsyI	GACNNNGTC	2 cut(s)	262, 514
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	6 cut(s)	170, 353, 605, 874, 1038, 1104
RsaNI	GTAC	6 cut(s)	169, 352, 604, 873, 1037, 1103
RseI	CAYNNNNRTG	3 cut(s)	416, 709, 729
SacII	CCGCGG	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	498, 818, 824
SatI	GCNGC	3 cut(s)	203, 1386, 1389
Sau3AI	GATC	4 cut(s)	157, 952, 1159, 1210
Sau96I	GGNCC	6 cut(s)	288, 377, 461, 947, 992, 1002
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	3 cut(s)	459, 621, 945
SduI	GDGCHC	2 cut(s)	1135, 1344
SfaNI	GCATC	4 cut(s)	64, 202, 303, 1297
SfcI	CTRYAG	2 cut(s)	481, 892
SfoI	GGCGCC	2 cut(s)	109, 115
Sfr303I	CCGCGG	1 cut(s)	206
SgrAI	CRCCGGYG	1 cut(s)	110
SgrBI	CCGCGG	1 cut(s)	206
SinI	GGWCC	3 cut(s)	288, 947, 992
SmiMI	CAYNNNNRTG	3 cut(s)	416, 709, 729
SmlI	CTYRAG	1 cut(s)	648
SmoI	CTYRAG	1 cut(s)	648
Sse9I	AATT	6 cut(s)	184, 642, 815, 903, 1296, 1401
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	7 cut(s)	142, 203, 205, 261, 494, 1075, 1338
SspDI	GGCGCC	2 cut(s)	107, 113
SspMI	CTAG	1 cut(s)	1314
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	3 cut(s)	457, 619, 943
StyI	CCWWGG	1 cut(s)	1313
TaaI	ACNGT	7 cut(s)	505, 530, 829, 984, 1036, 1346, 1444
TaiI	ACGT	4 cut(s)	141, 287, 761, 890
TaqI	TCGA	2 cut(s)	252, 389
TasI	AATT	6 cut(s)	184, 642, 815, 903, 1296, 1401
TatI	WGTACW	2 cut(s)	1036, 1102
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	5 cut(s)	249, 340, 548, 739, 1187
Tru1I	TTAA	3 cut(s)	498, 818, 824
Tru9I	TTAA	3 cut(s)	498, 818, 824
TscAI	CASTG	5 cut(s)	535, 677, 834, 922, 1349
TseFI	GTSAC	2 cut(s)	505, 1251
TseI	GCWGC	2 cut(s)	1385, 1388
Tsp45I	GTSAC	2 cut(s)	505, 1251
TspDTI	ATGAA	3 cut(s)	713, 1134, 1167
TspGWI	ACGGA	2 cut(s)	48, 74
TspRI	CASTG	5 cut(s)	535, 677, 834, 922, 1349
Tth111I	GACNNNGTC	2 cut(s)	262, 514
VpaK11BI	GGWCC	3 cut(s)	288, 947, 992
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	1 cut(s)	903
XmaJI	CCTAGG	1 cut(s)	1313
XmiI	GTMKAC	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	1070
XspI	CTAG	1 cut(s)	1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.