Rorug03G0061500

Domain of unknown function (DUF4793)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
4583827 .. 4584021
195 bp
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UTR
Exon/CDS
Intron
Rorug03G0061500.1

Sequence Viewer

Length: 195 bp
ATGGGTGGAGAAAGAGACCAATGGCCTCATATCCCTCAGACCTCCCGGATCAGTCAACACTGCGACGATGATCATCTTTGCAAACGCCTTATACTCAAAGCAACGTGGAATGATCGATACTTCAATGCATCGAAAACAATCAACAATGAGTTTCACCTTCTGATGGGGACTCAGTTAAGGGAGTGCCTTTCATGA

Protein Analysis

64

Amino Acids

7.57

Weight (kDa)

6.89

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 56
AoxI GGCC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 146
BccI CCATC 1 cut(s) 157
BclI TGATCA 1 cut(s) 70
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 46
Bsa29I ATCGAT 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse8I GATNNNNATC 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 115
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 2 cut(s) 50, 185
BshFI GGCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 115
BsiSI CCGG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 9
Bsp143I GATC 3 cut(s) 48, 70, 112
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 2 cut(s) 49, 184
BspDI ATCGAT 1 cut(s) 115
BspHI TCATGA 1 cut(s) 191
BspPI GGATC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 9
BssMI GATC 3 cut(s) 48, 70, 112
BstDEI CTNAG 2 cut(s) 36, 171
BstKTI GATC 3 cut(s) 51, 73, 115
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 48, 70, 112
BstSCI CCNGG 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 115
BsuRI GGCC 1 cut(s) 25
BsuTUI ATCGAT 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
CciI TCATGA 1 cut(s) 191
ClaI ATCGAT 1 cut(s) 115
CviAII CATG 1 cut(s) 192
CviJI RGCY 1 cut(s) 25
CviKI_1 RGCY 1 cut(s) 25
DdeI CTNAG 2 cut(s) 36, 171
DpnI GATC 3 cut(s) 50, 72, 114
DpnII GATC 3 cut(s) 48, 70, 112
Eco31I GGTCTC 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 130
FaeI CATG 1 cut(s) 195
FaiI YATR 3 cut(s) 30, 92, 193
FaqI GGGAC 1 cut(s) 181
FatI CATG 1 cut(s) 191
FbaI TGATCA 1 cut(s) 70
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 46
Hin1II CATG 1 cut(s) 195
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 2 cut(s) 39, 162
Hpy188III TCNNGA 1 cut(s) 192
Hpy8I GTNNAC 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 81, 128
HpyF3I CTNAG 2 cut(s) 36, 171
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 3 cut(s) 48, 70, 112
LpnPI CCDG 1 cut(s) 59
LweI GCATC 1 cut(s) 137
MaeII ACGT 1 cut(s) 104
MalI GATC 3 cut(s) 50, 72, 114
MboI GATC 3 cut(s) 48, 70, 112
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 3 cut(s) 36, 45, 52
Mph1103I ATGCAT 1 cut(s) 130
MseI TTAA 1 cut(s) 176
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 46
NciI CCSGG 1 cut(s) 46
NdeII GATC 3 cut(s) 48, 70, 112
NlaIII CATG 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 130
PagI TCATGA 1 cut(s) 191
PfoI TCCNGGA 1 cut(s) 44
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 3 cut(s) 48, 70, 112
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 46
SetI ASST 3 cut(s) 44, 107, 159
SfaNI GCATC 1 cut(s) 137
SgeI CNNG 3 cut(s) 57, 58, 117
StyD4I CCNGG 1 cut(s) 44
TaiI ACGT 1 cut(s) 107
TaqI TCGA 2 cut(s) 115, 131
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 1 cut(s) 65
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.