pycom11g06120

Domain of unknown function (DUF4792)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001521
Physical Location & Seq
Reverse (-)
4720718 .. 4723922
3205 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g06120.6

Sequence Viewer

Length: 1359 bp
ATGGAAACCCCAGAACCAGATCGAAGAGAAGATGCATCCTTTCCATCTTCTTCTTCTTCTCCGCCGTCGAGCTCATGGGTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAAGAGACAGACGTTCAAATGGGGACAATTTTGCTGTGCAGCAGCGGATGAGAAGTTCTAGGACTTTTACTTATCATGTGAACTTGTTGGTGTCCGATGTAACAGCGTCTGAATTGAAGGATGATATTTGGTCGGCCTTTGCTGTGCTTATCACCTTTTGGTTCTTTGCATCTATGACTCTGATTCTTGGTTTCTATGGATCCGGCAATCTACCACTAGGCCCGAACTGCTCGCGCTTGATACAAACTAATCCATTTTTTGTGCAATCCATTAAGGTGATCAACCGCATTTCATCTTGTAATTCTCGTTTAGTAAAGAACTGGGGTGCAGTAAAACTCATCTGTGTAATGCCTACAAGTTCCTCGCCTTTAACCCTTGTAATCGCACAAGGTAGTGAGAGCCTGGCTGAATGGATAGAGGATCGATCGTCATATGGTAACGCAACATTGTCTTGGAATATAATTTATGGAAGTGGTAGGATCCAGCAGGAAATTCCAAAGTCTTCTACTTACTATATCGCAGTAGGGAACTTGAACCCAGAGAATGTTGAGGTAGAGTTGGTATTCAACATAAAATCTATTCTTTATAACACAACCAAGGCGTATTACAAATGCTCTTTGTATAACCGGTTATGCAGCTTAAAGCTTTCCCTCTTTCGGGCAAATGTTGCTGTCATAACTTCTCCAGGTCCGGAAGAGGGTGTTCCTGACAATGACTGGTATGTAAACCTGTCTTATGGACCGAGATGGGCCATGTATTTTCTTGTAGCAGGCGTTATGACTTTGCTCCTCTTATCGGCCTTTAAAATTTATTACAAATTCCAAAATTTTGGTGAACACACAACCGAATTTCAGGCAGAGGAGGGAGAATCCGAGCAAACCCCATTGCTTCCACCCAAAGACGATGAAGTTTTGAGTTGGGGTTCATCGTATGAATCTGTTTCCAATACTGAGGAAGATTTGGATGAGTGCCTTGCTGCGAGTTCCCTTGAAGGAGGGTTAACAAGTGAAGGAGATAGCAACAATACTCGGCGTCTTTGTGTCATTTGCTTTGATGGTCCAAGGGATTGCTTCTTTCTTCCCTGTGGGCACTGCACTGCCTGTTTTACTTGCGGAACAAGGATTGCCGAGGAGGCTGGTACGTGCCCCATATGCCGTAGAAGGATGAAGAAAGTGAGGAAGATTTTTACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

453

Amino Acids

50.84

Weight (kDa)

4.54

Isoelectric Point (pI)

65.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
AccII CGCG 1 cut(s) 397
AccIII TCCGGA 1 cut(s) 853
AciI CCGC 4 cut(s) 62, 208, 448, 1275
AclWI GGATC 5 cut(s) 357, 370, 591, 637, 650
AcsI RAATTY 5 cut(s) 654, 969, 980, 988, 1010
AcyI GRCGYC 1 cut(s) 1195
AfaI GTAC 1 cut(s) 1303
AfiI CCNNNNNNNGG 4 cut(s) 819, 820, 860, 958
AgeI ACCGGT 1 cut(s) 789
AgsI TTSAA 5 cut(s) 180, 280, 697, 730, 1154
AjnI CCWGG 2 cut(s) 564, 847
AloI GAACNNNNNNTCC 2 cut(s) 202, 234
AluBI AGCT 3 cut(s) 72, 801, 808
AluI AGCT 3 cut(s) 72, 801, 808
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 5 cut(s) 357, 370, 591, 637, 650
AlwNI CAGNNNCTG 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 853
AoxI GGCC 4 cut(s) 297, 382, 912, 960
ApeKI GCWGC 4 cut(s) 202, 205, 798, 1139
ApoI RAATTY 5 cut(s) 654, 969, 980, 988, 1010
AsiGI ACCGGT 1 cut(s) 789
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 5 cut(s) 383, 851, 902, 912, 1220
AsuHPI GGTGA 3 cut(s) 307, 451, 1007
AvaII GGWCC 3 cut(s) 851, 902, 1220
BaeGI GKGCMC 2 cut(s) 1254, 1310
BamHI GGATCC 2 cut(s) 362, 642
BanII GRGCYC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 657
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 4 cut(s) 214, 217, 810, 1126
BccI CCATC 3 cut(s) 52, 903, 1211
BceAI ACGGC 2 cut(s) 49, 1302
BciT130I CCWGG 2 cut(s) 566, 849
BclI TGATCA 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 2 cut(s) 222, 380
BglI GCCNNNNNGGC 1 cut(s) 1295
BisI GCNGC 4 cut(s) 203, 206, 799, 1140
BlsI GCNGC 4 cut(s) 204, 207, 800, 1141
Bme1390I CCNGG 2 cut(s) 566, 849
Bme18I GGWCC 3 cut(s) 851, 902, 1220
BmgT120I GGNCC 5 cut(s) 383, 851, 902, 912, 1220
BmiI GGNNCC 2 cut(s) 364, 644
BmrFI CCNGG 2 cut(s) 566, 849
BmrI ACTGGG 1 cut(s) 493
BmsI GCATC 3 cut(s) 22, 44, 341
BmuI ACTGGG 1 cut(s) 493
BpiI GAAGAC 1 cut(s) 657
BpmI CTGGAG 1 cut(s) 831
Bsa29I ATCGAT 1 cut(s) 586
BsaAI YACGTR 1 cut(s) 1305
BsaHI GRCGYC 1 cut(s) 1195
BsaJI CCNNGG 3 cut(s) 759, 1223, 1290
BsaWI WCCGGW 2 cut(s) 789, 853
Bsc4I CCNNNNNNNGG 4 cut(s) 819, 820, 860, 958
Bse118I RCCGGY 1 cut(s) 789
Bse1I ACTGG 2 cut(s) 488, 884
Bse3DI GCAATG 1 cut(s) 1046
BseAI TCCGGA 1 cut(s) 853
BseBI CCWGG 2 cut(s) 566, 849
BseCI ATCGAT 1 cut(s) 586
BseDI CCNNGG 3 cut(s) 759, 1223, 1290
BseGI GGATG 5 cut(s) 35, 216, 289, 1132, 1332
BseLI CCNNNNNNNGG 4 cut(s) 819, 820, 860, 958
BseMI GCAATG 1 cut(s) 1046
BseMII CTCAG 1 cut(s) 1104
BseNI ACTGG 2 cut(s) 488, 884
BseRI GAGGAG 4 cut(s) 135, 941, 1037, 1307
BseSI GKGCMC 2 cut(s) 1254, 1310
BseXI GCAGC 4 cut(s) 214, 217, 810, 1126
BsgI GTGCAG 3 cut(s) 221, 510, 1240
Bsh1236I CGCG 1 cut(s) 397
Bsh1285I CGRYCG 1 cut(s) 590
BshFI GGCC 4 cut(s) 299, 384, 914, 962
BshTI ACCGGT 1 cut(s) 789
BshVI ATCGAT 1 cut(s) 586
BsiEI CGRYCG 1 cut(s) 590
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 3 cut(s) 366, 790, 854
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 4 cut(s) 819, 820, 860, 958
BsmAI GTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 4 cut(s) 299, 384, 914, 962
Bsp1286I GDGCHC 3 cut(s) 74, 1254, 1310
Bsp13I TCCGGA 1 cut(s) 853
Bsp143I GATC 6 cut(s) 19, 362, 441, 583, 587, 642
BspACI CCGC 4 cut(s) 62, 208, 448, 1275
BspANI GGCC 4 cut(s) 299, 384, 914, 962
BspCNI CTCAG 1 cut(s) 1105
BspDI ATCGAT 1 cut(s) 586
BspEI TCCGGA 1 cut(s) 853
BspFNI CGCG 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 364, 644
BspPI GGATC 5 cut(s) 357, 370, 591, 637, 650
BsrDI GCAATG 1 cut(s) 1046
BsrFI RCCGGY 1 cut(s) 789
BsrI ACTGG 2 cut(s) 488, 884
BssAI RCCGGY 1 cut(s) 789
BssECI CCNNGG 3 cut(s) 759, 1223, 1290
BssMI GATC 6 cut(s) 19, 362, 441, 583, 587, 642
BssNI GRCGYC 1 cut(s) 1195
BssT1I CCWWGG 2 cut(s) 759, 1223
Bst2UI CCWGG 2 cut(s) 566, 849
Bst4CI ACNGT 1 cut(s) 1354
Bst6I CTCTTC 2 cut(s) 19, 852
BstACI GRCGYC 1 cut(s) 1195
BstAPI GCANNNNNTGC 1 cut(s) 830
BstBAI YACGTR 1 cut(s) 1305
BstC8I GCNNGC 2 cut(s) 395, 934
BstDEI CTNAG 1 cut(s) 1113
BstF5I GGATG 5 cut(s) 35, 216, 289, 1132, 1332
BstFNI CGCG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 6 cut(s) 22, 365, 444, 586, 590, 645
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 6 cut(s) 19, 362, 441, 583, 587, 642
BstMCI CGRYCG 1 cut(s) 590
BstMWI GCNNNNNNNGC 4 cut(s) 390, 830, 1295, 1314
BstNI CCWGG 2 cut(s) 566, 849
BstSCI CCNGG 2 cut(s) 564, 847
BstSLI GKGCMC 2 cut(s) 1254, 1310
BstUI CGCG 1 cut(s) 397
BstV1I GCAGC 4 cut(s) 214, 217, 810, 1126
BstV2I GAAGAC 1 cut(s) 657
BstX2I RGATCY 2 cut(s) 362, 642
BstXI CCANNNNNNTGG 1 cut(s) 992
BstYI RGATCY 2 cut(s) 362, 642
Bsu15I ATCGAT 1 cut(s) 586
BsuRI GGCC 4 cut(s) 299, 384, 914, 962
BsuTUI ATCGAT 1 cut(s) 586
BtsCI GGATG 5 cut(s) 35, 216, 289, 1132, 1332
BtsI GCAGTG 2 cut(s) 1252, 1257
BtsIMutI CAGTG 2 cut(s) 1252, 1257
Cac8I GCNNGC 2 cut(s) 395, 934
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 399
Cfr10I RCCGGY 1 cut(s) 789
Cfr13I GGNCC 5 cut(s) 383, 851, 902, 912, 1220
ClaI ATCGAT 1 cut(s) 586
CseI GACGC 2 cut(s) 258, 1184
Csp6I GTAC 1 cut(s) 1302
CspAI ACCGGT 1 cut(s) 789
CviAII CATG 3 cut(s) 75, 239, 916
CviQI GTAC 1 cut(s) 1302
DdeI CTNAG 1 cut(s) 1113
DpnI GATC 6 cut(s) 21, 364, 443, 585, 589, 644
DpnII GATC 6 cut(s) 19, 362, 441, 583, 587, 642
DraI TTTAAA 1 cut(s) 967
Eam1104I CTCTTC 2 cut(s) 19, 852
EarI CTCTTC 2 cut(s) 19, 852
EciI GGCGGA 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 759, 1223
Eco24I GRGCYC 1 cut(s) 74
Eco47I GGWCC 3 cut(s) 851, 902, 1220
Eco53kI GAGCTC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 564, 847
EcoT14I CCWWGG 2 cut(s) 759, 1223
EcoT22I ATGCAT 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 2 cut(s) 759, 1223
FaeI CATG 3 cut(s) 78, 242, 919
FaqI GGGAC 1 cut(s) 200
FatI CATG 3 cut(s) 74, 238, 915
FauNDI CATATG 2 cut(s) 595, 1313
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 4 cut(s) 203, 206, 799, 1140
FokI GGATG 5 cut(s) 22, 223, 296, 1139, 1339
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 4 cut(s) 203, 206, 799, 1140
FspBI CTAG 2 cut(s) 222, 380
GlaI GCGC 1 cut(s) 398
GluI GCNGC 4 cut(s) 203, 206, 799, 1140
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 4 cut(s) 299, 384, 914, 962
HapII CCGG 3 cut(s) 366, 790, 854
HgaI GACGC 2 cut(s) 258, 1184
HhaI GCGC 1 cut(s) 399
Hin1I GRCGYC 1 cut(s) 1195
Hin1II CATG 3 cut(s) 78, 242, 919
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 1 cut(s) 1164
HindII GTYRAC 1 cut(s) 1164
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 4 cut(s) 340, 346, 1031, 1097
HpaI GTTAAC 1 cut(s) 1164
HpaII CCGG 3 cut(s) 366, 790, 854
HphI GGTGA 3 cut(s) 307, 451, 1007
Hpy166II GTNNAC 4 cut(s) 244, 889, 998, 1164
Hpy188I TCNGA 4 cut(s) 259, 274, 345, 1036
Hpy188III TCNNGA 2 cut(s) 854, 869
Hpy8I GTNNAC 4 cut(s) 244, 889, 998, 1164
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 6 cut(s) 110, 137, 274, 1148, 1166, 1317
HpyCH4III ACNGT 1 cut(s) 1354
HpyCH4IV ACGT 2 cut(s) 175, 1304
HpyCH4V TGCA 7 cut(s) 35, 202, 332, 427, 491, 798, 1257
HpyF10VI GCNNNNNNNGC 4 cut(s) 390, 830, 1295, 1314
HpyF3I CTNAG 1 cut(s) 1113
HpySE526I ACGT 2 cut(s) 175, 1304
Hsp92I GRCGYC 1 cut(s) 1195
Hsp92II CATG 3 cut(s) 78, 242, 919
HspAI GCGC 1 cut(s) 397
Kpn2I TCCGGA 1 cut(s) 853
Ksp22I TGATCA 1 cut(s) 441
KspAI GTTAAC 1 cut(s) 1164
Kzo9I GATC 6 cut(s) 19, 362, 441, 583, 587, 642
LmnI GCTCC 1 cut(s) 954
Lsp1109I GCAGC 4 cut(s) 214, 217, 810, 1126
LweI GCATC 3 cut(s) 22, 44, 341
MaeI CTAG 2 cut(s) 222, 380
MaeII ACGT 2 cut(s) 175, 1304
MaeIII GTNAC 2 cut(s) 262, 599
MalI GATC 6 cut(s) 21, 364, 443, 585, 589, 644
MboI GATC 6 cut(s) 19, 362, 441, 583, 587, 642
MflI RGATCY 2 cut(s) 362, 642
MhlI GDGCHC 3 cut(s) 74, 1254, 1310
MluCI AATT 9 cut(s) 190, 275, 463, 624, 654, 969, 980, 988, 1010
MlyI GAGTC 1 cut(s) 334
Mph1103I ATGCAT 1 cut(s) 37
MroI TCCGGA 1 cut(s) 853
MseI TTAA 5 cut(s) 435, 533, 803, 966, 1163
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 3 cut(s) 366, 790, 854
MspR9I CCNGG 2 cut(s) 566, 849
MvaI CCWGG 2 cut(s) 566, 849
MvnI CGCG 1 cut(s) 397
MwoI GCNNNNNNNGC 4 cut(s) 390, 830, 1295, 1314
NdeI CATATG 2 cut(s) 595, 1313
NdeII GATC 6 cut(s) 19, 362, 441, 583, 587, 642
NlaIII CATG 3 cut(s) 78, 242, 919
NlaIV GGNNCC 2 cut(s) 364, 644
NmeAIII GCCGAG 2 cut(s) 1171, 1315
NsiI ATGCAT 1 cut(s) 37
PfeI GAWTC 3 cut(s) 346, 1031, 1097
PinAI ACCGGT 1 cut(s) 789
PkrI GCNGC 4 cut(s) 204, 207, 800, 1141
Ple19I CGATCG 1 cut(s) 590
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Ppu21I YACGTR 1 cut(s) 1305
PsiI TTATAA 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 564, 847
PspGI CCWGG 2 cut(s) 564, 847
PspN4I GGNNCC 2 cut(s) 364, 644
PspPI GGNCC 5 cut(s) 383, 851, 902, 912, 1220
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 2 cut(s) 362, 642
PvuI CGATCG 1 cut(s) 590
RsaI GTAC 1 cut(s) 1303
RsaNI GTAC 1 cut(s) 1302
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 74
SaqAI TTAA 5 cut(s) 435, 533, 803, 966, 1163
SatI GCNGC 4 cut(s) 203, 206, 799, 1140
Sau3AI GATC 6 cut(s) 19, 362, 441, 583, 587, 642
Sau96I GGNCC 5 cut(s) 383, 851, 902, 912, 1220
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 566, 849
SduI GDGCHC 3 cut(s) 74, 1254, 1310
SfaNI GCATC 3 cut(s) 22, 44, 341
SinI GGWCC 3 cut(s) 851, 902, 1220
SmiMI CAYNNNNRTG 1 cut(s) 437
Sse9I AATT 9 cut(s) 190, 275, 463, 624, 654, 969, 980, 988, 1010
SsiI CCGC 4 cut(s) 62, 208, 448, 1275
SspMI CTAG 2 cut(s) 222, 380
SstI GAGCTC 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 564, 847
StyI CCWWGG 2 cut(s) 759, 1223
TaaI ACNGT 1 cut(s) 1354
TaiI ACGT 2 cut(s) 178, 1307
TaqI TCGA 3 cut(s) 22, 68, 586
TaqII GACCGA 1 cut(s) 919
TasI AATT 9 cut(s) 190, 275, 463, 624, 654, 969, 980, 988, 1010
TfiI GAWTC 3 cut(s) 346, 1031, 1097
Tru1I TTAA 5 cut(s) 435, 533, 803, 966, 1163
Tru9I TTAA 5 cut(s) 435, 533, 803, 966, 1163
TscAI CASTG 2 cut(s) 1259, 1264
TseI GCWGC 4 cut(s) 202, 205, 798, 1139
TspDTI ATGAA 5 cut(s) 444, 1077, 1083, 1110, 1343
TspRI CASTG 2 cut(s) 1259, 1264
VpaK11BI GGWCC 3 cut(s) 851, 902, 1220
XapI RAATTY 5 cut(s) 654, 969, 980, 988, 1010
XspI CTAG 2 cut(s) 222, 380
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.