Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001521

Physical Location & Seq

Genomic Coordinates Forward (+)

4584146 .. 4584469

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0061600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTTCTGGTTACTTCCGGATGCAAGAGATTGGCTGCCGGCTCTGGTTGAGAGAGTCCGGTCCGAGCTGGGATTTCTAGATCACCATCTTAATGGTTGCAGGCATGTTGGGGTTGGGAAATTCTTGATCCCAAAGTTTAAGATGTCTTCCGGGTTTGAAGCTTCGAGTGCTATGAAGAAACTAGGGCGTTGTGATTTAATGGCCATATTTCATGAGGCTGTAATAGAAGTCGATGAAAATGGCACAACAGCTGCAGCTGCTACTTGTGCTCGTAGGTATTTTGGCGATGGTGAGGTCTCTAAGGGCCCATTTGGGATTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

107

Amino Acids

11.77

Weight (kDa)

6.89

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	1 - 88	5.9e-06	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01450
fragaria_vesca	FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430
malus_domestica	MD03G1070000.v1.1 MD04G1153100.v1.1 MD11G1073800.v1.1 MD12G1166600.v1.1
prunus_persica	Prupe.6G057100_v2.0.a1 Prupe.6G057100_v2.0.a1 Prupe.6G277400_v2.0.a1 Prupe.6G277400_v2.0.a1
pyrus_communis	pycom03g05570 pycom11g06120 pycom12g15850
rosa_chinensis	RchiOBHm_Chr3g0463121 RchiOBHm_Chr5g0069661
rosa_laevigata	RLG00000024811 RLG00000036082
rosa_multiflora	Rmu_sc0000738.1_g000037 Rmu_sc0000766.1_g000040 Rmu_sc0008595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011420 Rroxscaffold_6G00416950
rosa_rugosa	Rorug03G0061500 Rorug03G0061600 Rorug03G0061700 Rorug05G0399000 Rorug05G0399100
rosa_samantha	Rh3AG119800 Rh3BG124200 Rh3CG126200 Rh3DG125200 Rh5AG455800 Rh5BG474800 Rh5CG498200 Rh5DG486300
rosa_wichuraiana	Rw3G010130 Rw5G042530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	16
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	4 cut(s)	67, 161, 251, 257
AluI	AGCT	4 cut(s)	67, 161, 251, 257
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	121
Aor13HI	TCCGGA	1 cut(s)	16
AoxI	GGCC	2 cut(s)	201, 304
ApaI	GGGCCC	1 cut(s)	308
ApeKI	GCWGC	4 cut(s)	34, 251, 254, 257
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	3 cut(s)	60, 304, 305
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	74, 302
AvaII	GGWCC	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	4 cut(s)	21, 238, 244, 266
BccI	CCATC	2 cut(s)	93, 281
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	2 cut(s)	77, 182
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	4 cut(s)	35, 252, 255, 258
BlsI	GCNGC	4 cut(s)	36, 253, 256, 259
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	3 cut(s)	60, 304, 305
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	301
BsaWI	WCCGGW	2 cut(s)	16, 57
Bse118I	RCCGGY	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	84
BseAI	TCCGGA	1 cut(s)	16
BseGI	GGATG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	4 cut(s)	21, 238, 244, 266
BseYI	CCCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	203, 306
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	4 cut(s)	17, 38, 58, 150
BsmAI	GTCTC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	203, 306
Bso31I	GGTCTC	1 cut(s)	301
Bsp120I	GGGCCC	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	271, 308
Bsp13I	TCCGGA	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	79, 126
BspANI	GGCC	2 cut(s)	203, 306
BspEI	TCCGGA	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssMI	GATC	2 cut(s)	79, 126
BstC8I	GCNNGC	2 cut(s)	39, 101
BstDEI	CTNAG	2 cut(s)	300, 321
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	82, 129
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	79, 126
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 257, 266
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	308
BstV1I	GCAGC	4 cut(s)	21, 238, 244, 266
BstV2I	GAAGAC	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	203, 306
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	39, 101
CciI	TCATGA	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	60, 304, 305
CpoI	CGGWCCG	1 cut(s)	60
CspI	CGGWCCG	1 cut(s)	60
CviAII	CATG	2 cut(s)	104, 212
CviJI	RGCY	9 cut(s)	34, 41, 67, 161, 203, 218, 251, 257, 306
CviKI_1	RGCY	9 cut(s)	34, 41, 67, 161, 203, 218, 251, 257, 306
DdeI	CTNAG	2 cut(s)	300, 321
DpnI	GATC	2 cut(s)	81, 128
DpnII	GATC	2 cut(s)	79, 126
EaeI	YGGCCR	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	2 cut(s)	107, 215
FaiI	YATR	4 cut(s)	105, 173, 206, 213
FatI	CATG	2 cut(s)	103, 211
Fnu4HI	GCNGC	4 cut(s)	35, 252, 255, 258
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	4 cut(s)	35, 252, 255, 258
FspBI	CTAG	2 cut(s)	77, 182
GluI	GCNGC	4 cut(s)	35, 252, 255, 258
GsaI	CCCAGC	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	203, 306
HapII	CCGG	4 cut(s)	17, 38, 58, 150
Hin1II	CATG	2 cut(s)	107, 215
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	4 cut(s)	17, 38, 58, 150
HphI	GGTGA	2 cut(s)	74, 302
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	4 cut(s)	17, 77, 124, 212
HpyCH4V	TGCA	3 cut(s)	23, 99, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 257, 266
HpyF3I	CTNAG	2 cut(s)	300, 321
Hsp92II	CATG	2 cut(s)	107, 215
Kpn2I	TCCGGA	1 cut(s)	16
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	79, 126
LpnPI	CCDG	7 cut(s)	29, 30, 51, 53, 71, 85, 163
Lsp1109I	GCAGC	4 cut(s)	21, 238, 244, 266
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	77, 182
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	2 cut(s)	81, 128
MboI	GATC	2 cut(s)	79, 126
MboII	GAAGA	2 cut(s)	138, 187
MhlI	GDGCHC	2 cut(s)	271, 308
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	1 cut(s)	119
MluNI	TGGCCA	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	2 cut(s)	208, 286
Mox20I	TGGCCA	1 cut(s)	203
MroI	TCCGGA	1 cut(s)	16
MroNI	GCCGGC	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	3 cut(s)	90, 138, 197
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	203
MspA1I	CMGCKG	2 cut(s)	251, 257
MspI	CCGG	4 cut(s)	17, 38, 58, 150
MspR9I	CCNGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	3 cut(s)	167, 257, 266
NaeI	GCCGGC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	2 cut(s)	79, 126
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	107, 215
NlaIV	GGNNCC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	107
PagI	TCATGA	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	39
PkrI	GCNGC	4 cut(s)	36, 253, 256, 259
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	306
PspOMI	GGGCCC	1 cut(s)	304
PspPI	GGNCC	3 cut(s)	60, 304, 305
PstI	CTGCAG	1 cut(s)	256
PvuII	CAGCTG	2 cut(s)	251, 257
RseI	CAYNNNNRTG	1 cut(s)	90
Rsr2I	CGGWCCG	1 cut(s)	60
RsrII	CGGWCCG	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	90, 138, 197
SatI	GCNGC	4 cut(s)	35, 252, 255, 258
Sau3AI	GATC	2 cut(s)	79, 126
Sau96I	GGNCC	3 cut(s)	60, 304, 305
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	271, 308
SetI	ASST	6 cut(s)	69, 163, 253, 259, 278, 297
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	119
SspMI	CTAG	2 cut(s)	77, 182
StyD4I	CCNGG	1 cut(s)	149
TaqI	TCGA	2 cut(s)	164, 231
TasI	AATT	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	90, 138, 197
Tru9I	TTAA	3 cut(s)	90, 138, 197
TseI	GCWGC	4 cut(s)	34, 251, 254, 257
TspDTI	ATGAA	3 cut(s)	188, 200, 249
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	107
XspI	CTAG	2 cut(s)	77, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.