Prupe.6G057100_v2.0.a1

Domain of unknown function (DUF4792)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001521
Physical Location & Seq
Reverse (-)
4003972 .. 4007679
3708 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G057100.2

Sequence Viewer

Length: 1431 bp
ATGGAAAACCCAGAACCAGATCAGGGTCAACATGTTTCTGGTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCATCTAGCTCACAGGTGCAAGATGAAGAAAATAACAGGCCTCAAAATGGGGATGATATTTATAATGAGCAGAGCCAACACAATCATATTGAACAGCAGCAGCAGAGGATTTCTAGGACTTTTACTTATCATATGAATTTGTTGGTGTCTGATGTAGCAGCATCCGAGATGAAGGATGACGTTTGGTCTTGCCTTGTTGTGCTTGTCACGTTTTGGTTCTTTGCATCCATGACTTTGATACTCGGTTTTTATGGATCGGCCAATTTGAAATTGGGGCCGAATTGCTCACTCCTGATACAACCTAATCCCTTCTTTGTGCAATCCATTAAGGCACAAGAACTTGATGAGCCAAAACCTGGGCCAATGTTATATGGATTCCACAAACCTCCTCCCCTGGATGTTGAAGTAGCTTGGACTGAAACACATGACACACCTGTGCCAGCCAATTATCACAAGGAATGGATATACTTTCTAAACAAAGGGTCTAGAATAGATATTTTTTACCGTGTAAAACCTACAAGTTCCTTGCCTTTAACCCTTGTAGTCGCACAAGGTAGTGAAAGCATGGCTGAGTGGATAGAGGATCCATCATATGGTAACGCAACATTGTCTTGGAATATAATATATGAAAGTGGTAAGATCCAGCAGGAAATTCCAAAGTCTTCTAATTATTATATTGCAGTAGGGAACTTGAACCCTGAGGATGTTGAGGTAGAGTTGGAATTCAACATCAAATCTGCTCTTTATAACACAACCGAGGCGTATTACAAATGCTCCTTAGATAACCAATTATGTAGCTTAAAGCTTTCCCTCTTGGGGGCAAGTGCTGTTGTCATAACTTCTCCAGGTCCTAAAGAGGGTGACCCAGACGATGACTGGTACATCAGACTCTCTTATGGACCGCGATGGATCATGTATTTTCTTGGATCAGGTGTGATGACTGTGCTTCTCTTAATGGCCCTTAGATTTTGTAATGTATTCCAAAACTCTGGTGAAGACAGAATAGAATTTCAAGCAGGGGAGGCAGAATCCGAACGAACCCCATTGCTTTCACCGAAAGATGACGATGTTTTGAGTTGGGGTTCATCTTATGAATCTGTTTCAAATAACGAAGAAGATTTGGAAGAGAGCCTTGAAGTGAGTTCCCTTGTAGGAAAGTCAATAAATGAAGGGGATAGCAACAATACTCAGCGTCTTTGTGTTATTTGCTTTGATGGTCCAAGAGATTGCTTCTTTCTTCCTTGTGGGCACTGTGCTGCCTGTTTTACTTGTGGAACAAGGATTGCCGAAGAGGCGGGTACTTGTCCCATATGCCGTAGAAGGATGAAGAAAGTGAGGAAGATCTTTACAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

477

Amino Acids

53.3

Weight (kDa)

4.66

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 138, 822
AccB7I CCANNNNNTGG 2 cut(s) 431, 668
AccII CGCG 1 cut(s) 979
AciI CCGC 2 cut(s) 977, 1370
AclWI GGATC 6 cut(s) 337, 653, 666, 709, 992, 1009
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 4 cut(s) 211, 726, 797, 1082
AfaI GTAC 2 cut(s) 956, 1375
AfiI CCNNNNNNNGG 7 cut(s) 23, 122, 431, 668, 891, 892, 932
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 8 cut(s) 167, 343, 479, 769, 802, 1088, 1179, 1211
AhdI GACNNNNNGTC 1 cut(s) 259
AjnI CCWGG 3 cut(s) 430, 468, 919
AleI CACNNNNGTG 1 cut(s) 509
AluBI AGCT 4 cut(s) 84, 485, 873, 880
AluI AGCT 4 cut(s) 84, 485, 873, 880
AlwI GGATC 6 cut(s) 337, 653, 666, 709, 992, 1009
AoxI GGCC 5 cut(s) 113, 333, 350, 434, 1032
ApeKI GCWGC 4 cut(s) 172, 175, 233, 1331
ApoI RAATTY 4 cut(s) 211, 726, 797, 1082
AspS9I GGNCC 7 cut(s) 41, 350, 434, 923, 974, 1033, 1292
AsuHPI GGTGA 4 cut(s) 66, 947, 1079, 1119
AvaII GGWCC 4 cut(s) 41, 923, 974, 1292
AxyI CCTNAGG 1 cut(s) 774
BaeGI GKGCMC 1 cut(s) 1326
BamHI GGATCC 1 cut(s) 658
BbsI GAAGAC 2 cut(s) 729, 1077
BbvI GCAGC 4 cut(s) 184, 187, 245, 1318
BccI CCATC 4 cut(s) 85, 670, 975, 1283
BceAI ACGGC 1 cut(s) 1374
BciT130I CCWGG 3 cut(s) 432, 470, 921
BfaI CTAG 3 cut(s) 81, 189, 561
BglI GCCNNNNNGGC 1 cut(s) 1367
BglII AGATCT 1 cut(s) 1416
BisI GCNGC 4 cut(s) 173, 176, 234, 1332
BlsI GCNGC 4 cut(s) 174, 177, 235, 1333
Bme1390I CCNGG 3 cut(s) 432, 470, 921
Bme18I GGWCC 4 cut(s) 41, 923, 974, 1292
BmeRI GACNNNNNGTC 1 cut(s) 259
BmgT120I GGNCC 7 cut(s) 41, 350, 434, 923, 974, 1033, 1292
BmiI GGNNCC 2 cut(s) 351, 660
BmrFI CCNGG 3 cut(s) 432, 470, 921
BmsI GCATC 2 cut(s) 245, 308
BpiI GAAGAC 2 cut(s) 729, 1077
BpmI CTGGAG 1 cut(s) 903
BsaJI CCNNGG 3 cut(s) 431, 468, 831
BsaXI ACNNNNNCTCC 2 cut(s) 833, 863
Bsc4I CCNNNNNNNGG 7 cut(s) 23, 122, 431, 668, 891, 892, 932
Bse1I ACTGG 1 cut(s) 956
Bse21I CCTNAGG 1 cut(s) 774
Bse3DI GCAATG 1 cut(s) 1118
BseBI CCWGG 3 cut(s) 432, 470, 921
BseDI CCNNGG 3 cut(s) 431, 468, 831
BseGI GGATG 7 cut(s) 133, 236, 256, 299, 478, 784, 1404
BseLI CCNNNNNNNGG 7 cut(s) 23, 122, 431, 668, 891, 892, 932
BseMI GCAATG 1 cut(s) 1118
BseMII CTCAG 3 cut(s) 636, 765, 1277
BseNI ACTGG 1 cut(s) 956
BseRI GAGGAG 1 cut(s) 453
BseSI GKGCMC 1 cut(s) 1326
BseXI GCAGC 4 cut(s) 184, 187, 245, 1318
Bsh1236I CGCG 1 cut(s) 979
BshFI GGCC 5 cut(s) 115, 335, 352, 436, 1034
BslFI GGGAC 1 cut(s) 1365
BslI CCNNNNNNNGG 7 cut(s) 23, 122, 431, 668, 891, 892, 932
BsmFI GGGAC 1 cut(s) 1365
BsnI GGCC 5 cut(s) 115, 335, 352, 436, 1034
Bsp1286I GDGCHC 1 cut(s) 1326
Bsp143I GATC 7 cut(s) 19, 329, 658, 714, 984, 1001, 1416
BspACI CCGC 2 cut(s) 977, 1370
BspANI GGCC 5 cut(s) 115, 335, 352, 436, 1034
BspCNI CTCAG 3 cut(s) 637, 766, 1276
BspFNI CGCG 1 cut(s) 979
BspLI GGNNCC 2 cut(s) 351, 660
BspPI GGATC 6 cut(s) 337, 653, 666, 709, 992, 1009
BsrDI GCAATG 1 cut(s) 1118
BsrI ACTGG 1 cut(s) 956
BssECI CCNNGG 3 cut(s) 431, 468, 831
BssMI GATC 7 cut(s) 19, 329, 658, 714, 984, 1001, 1416
Bst2UI CCWGG 3 cut(s) 432, 470, 921
Bst4CI ACNGT 4 cut(s) 581, 1018, 1328, 1426
Bst6I CTCTTC 2 cut(s) 1194, 1359
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 5 cut(s) 645, 774, 853, 1037, 1263
BstEII GGTNACC 1 cut(s) 935
BstF5I GGATG 7 cut(s) 133, 236, 256, 299, 478, 784, 1404
BstFNI CGCG 1 cut(s) 979
BstKTI GATC 7 cut(s) 22, 332, 661, 717, 987, 1004, 1419
BstMBI GATC 7 cut(s) 19, 329, 658, 714, 984, 1001, 1416
BstMWI GCNNNNNNNGC 2 cut(s) 1097, 1367
BstNI CCWGG 3 cut(s) 432, 470, 921
BstNSI RCATGY 1 cut(s) 35
BstPI GGTNACC 1 cut(s) 935
BstSCI CCNGG 3 cut(s) 430, 468, 919
BstSLI GKGCMC 1 cut(s) 1326
BstUI CGCG 1 cut(s) 979
BstV1I GCAGC 4 cut(s) 184, 187, 245, 1318
BstV2I GAAGAC 2 cut(s) 729, 1077
BstX2I RGATCY 3 cut(s) 658, 714, 1416
BstXI CCANNNNNNTGG 1 cut(s) 1064
BstYI RGATCY 3 cut(s) 658, 714, 1416
Bsu36I CCTNAGG 1 cut(s) 774
BsuRI GGCC 5 cut(s) 115, 335, 352, 436, 1034
BtgZI GCGATG 1 cut(s) 994
BtsCI GGATG 7 cut(s) 133, 236, 256, 299, 478, 784, 1404
BtsIMutI CAGTG 1 cut(s) 1324
Cac8I GCNNGC 1 cut(s) 516
Cfr13I GGNCC 7 cut(s) 41, 350, 434, 923, 974, 1033, 1292
CseI GACGC 1 cut(s) 1256
Csp6I GTAC 2 cut(s) 955, 1374
CviAII CATG 5 cut(s) 32, 304, 500, 640, 988
CviQI GTAC 2 cut(s) 955, 1374
DdeI CTNAG 5 cut(s) 645, 774, 853, 1037, 1263
DpnI GATC 7 cut(s) 21, 331, 660, 716, 986, 1003, 1418
DpnII GATC 7 cut(s) 19, 329, 658, 714, 984, 1001, 1416
DriI GACNNNNNGTC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 2 cut(s) 1194, 1359
Eam1105I GACNNNNNGTC 1 cut(s) 259
EarI CTCTTC 2 cut(s) 1194, 1359
Eco147I AGGCCT 1 cut(s) 115
Eco47I GGWCC 4 cut(s) 41, 923, 974, 1292
Eco81I CCTNAGG 1 cut(s) 774
Eco91I GGTNACC 1 cut(s) 935
EcoO109I RGGNCCY 1 cut(s) 923
EcoO65I GGTNACC 1 cut(s) 935
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 3 cut(s) 430, 468, 919
FaeI CATG 5 cut(s) 35, 307, 503, 643, 991
FalI AAGNNNNNCTT 2 cut(s) 1191, 1223
FaqI GGGAC 1 cut(s) 1365
FatI CATG 5 cut(s) 31, 303, 499, 639, 987
FauI CCCGC 1 cut(s) 1363
FauNDI CATATG 3 cut(s) 207, 667, 1385
Fnu4HI GCNGC 4 cut(s) 173, 176, 234, 1332
FokI GGATG 7 cut(s) 140, 223, 263, 286, 485, 791, 1411
Fsp4HI GCNGC 4 cut(s) 173, 176, 234, 1332
FspBI CTAG 3 cut(s) 81, 189, 561
GluI GCNGC 4 cut(s) 173, 176, 234, 1332
GsuI CTGGAG 1 cut(s) 903
HaeIII GGCC 5 cut(s) 115, 335, 352, 436, 1034
HgaI GACGC 1 cut(s) 1256
Hin1II CATG 5 cut(s) 35, 307, 503, 643, 991
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 878
HinfI GANTC 4 cut(s) 450, 963, 1103, 1169
HphI GGTGA 4 cut(s) 66, 947, 1079, 1119
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 5 cut(s) 226, 241, 962, 1108, 1430
Hpy188III TCNNGA 2 cut(s) 367, 561
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 5 cut(s) 54, 241, 394, 1238, 1389
HpyCH4III ACNGT 4 cut(s) 581, 1018, 1328, 1426
HpyCH4IV ACGT 2 cut(s) 255, 284
HpyCH4V TGCA 4 cut(s) 94, 299, 394, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 1097, 1367
HpyF3I CTNAG 5 cut(s) 645, 774, 853, 1037, 1263
HpySE526I ACGT 2 cut(s) 255, 284
Hsp92II CATG 5 cut(s) 35, 307, 503, 643, 991
Kzo9I GATC 7 cut(s) 19, 329, 658, 714, 984, 1001, 1416
LmnI GCTCC 1 cut(s) 854
Lsp1109I GCAGC 4 cut(s) 184, 187, 245, 1318
LweI GCATC 2 cut(s) 245, 308
MaeI CTAG 3 cut(s) 81, 189, 561
MaeII ACGT 2 cut(s) 255, 284
MaeIII GTNAC 3 cut(s) 280, 671, 935
MalI GATC 7 cut(s) 21, 331, 660, 716, 986, 1003, 1418
MboI GATC 7 cut(s) 19, 329, 658, 714, 984, 1001, 1416
MflI RGATCY 3 cut(s) 658, 714, 1416
MhlI GDGCHC 1 cut(s) 1326
MlyI GAGTC 1 cut(s) 957
MmeI TCCRAC 1 cut(s) 774
MseI TTAA 4 cut(s) 402, 608, 875, 1028
MslI CAYNNNNRTG 1 cut(s) 509
MspR9I CCNGG 3 cut(s) 432, 470, 921
MvaI CCWGG 3 cut(s) 432, 470, 921
MvnI CGCG 1 cut(s) 979
MwoI GCNNNNNNNGC 2 cut(s) 1097, 1367
NdeI CATATG 3 cut(s) 207, 667, 1385
NdeII GATC 7 cut(s) 19, 329, 658, 714, 984, 1001, 1416
NlaIII CATG 5 cut(s) 35, 307, 503, 643, 991
NlaIV GGNNCC 2 cut(s) 351, 660
NmuCI GTSAC 2 cut(s) 280, 935
NspI RCATGY 1 cut(s) 35
OliI CACNNNNGTG 1 cut(s) 509
PceI AGGCCT 1 cut(s) 115
PciI ACATGT 1 cut(s) 31
PfeI GAWTC 3 cut(s) 450, 1103, 1169
PflMI CCANNNNNTGG 2 cut(s) 431, 668
PkrI GCNGC 4 cut(s) 174, 177, 235, 1333
PleI GAGTC 1 cut(s) 957
PpsI GAGTC 1 cut(s) 957
PpuMI RGGWCCY 1 cut(s) 923
PscI ACATGT 1 cut(s) 31
PsiI TTATAA 2 cut(s) 138, 822
Psp5II RGGWCCY 1 cut(s) 923
Psp6I CCWGG 3 cut(s) 430, 468, 919
PspEI GGTNACC 1 cut(s) 935
PspGI CCWGG 3 cut(s) 430, 468, 919
PspN4I GGNNCC 2 cut(s) 351, 660
PspPI GGNCC 7 cut(s) 41, 350, 434, 923, 974, 1033, 1292
PspPPI RGGWCCY 1 cut(s) 923
PsuI RGATCY 3 cut(s) 658, 714, 1416
RsaI GTAC 2 cut(s) 956, 1375
RsaNI GTAC 2 cut(s) 955, 1374
RseI CAYNNNNRTG 1 cut(s) 509
SaqAI TTAA 4 cut(s) 402, 608, 875, 1028
SatI GCNGC 4 cut(s) 173, 176, 234, 1332
Sau3AI GATC 7 cut(s) 19, 329, 658, 714, 984, 1001, 1416
Sau96I GGNCC 7 cut(s) 41, 350, 434, 923, 974, 1033, 1292
SchI GAGTC 1 cut(s) 957
ScrFI CCNGG 3 cut(s) 432, 470, 921
SduI GDGCHC 1 cut(s) 1326
SfaNI GCATC 2 cut(s) 245, 308
SinI GGWCC 4 cut(s) 41, 923, 974, 1292
SmiMI CAYNNNNRTG 1 cut(s) 509
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 2 cut(s) 977, 1370
SspMI CTAG 3 cut(s) 81, 189, 561
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 430, 468, 919
TaaI ACNGT 4 cut(s) 581, 1018, 1328, 1426
TaiI ACGT 2 cut(s) 258, 287
TfiI GAWTC 3 cut(s) 450, 1103, 1169
Tru1I TTAA 4 cut(s) 402, 608, 875, 1028
Tru9I TTAA 4 cut(s) 402, 608, 875, 1028
TscAI CASTG 1 cut(s) 1331
TseFI GTSAC 2 cut(s) 280, 935
TseI GCWGC 4 cut(s) 172, 175, 233, 1331
Tsp45I GTSAC 2 cut(s) 280, 935
TspDTI ATGAA 8 cut(s) 114, 224, 260, 717, 1149, 1182, 1257, 1415
TspRI CASTG 1 cut(s) 1331
Van91I CCANNNNNTGG 2 cut(s) 431, 668
VpaK11BI GGWCC 4 cut(s) 41, 923, 974, 1292
XapI RAATTY 4 cut(s) 211, 726, 797, 1082
XbaI TCTAGA 1 cut(s) 560
XceI RCATGY 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 2 cut(s) 343, 948
XspI CTAG 3 cut(s) 81, 189, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.