Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001521

Physical Location & Seq

Genomic Coordinates Reverse (-)

10296175 .. 10299828

Gene Structure 3654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGAAGAGCCTCAGACTTCTTCTTCGTCTTCCTCCTCTGCTTCTCCATCTTCTTCTACTGATGCTGTCATCCATAGGGACACTACTACTTCCGGCGCCGGCGCCTCGTCTTCCAGCACTTCGCAGGTCCGCGAAGAGGAGGACGATCACAATCAGTACCACCACCACCACAATTTCCGGCATCCGGAGCCGCAGGTCAACGAAATCGGAACTTCTTACAGAGTCGGCTTATCGGGATTCGATGAGACCGCGTCTGTGATTAGAGATGACACGTGGTCCTGCATCATCGTCCTCCTCACCTTCTGGTTCTTTGTATCTATGACTTTGATTCTGGGAGTGTACGGGTCTGAGACCTTAGAGCTTGGCCCTAATACTTCGACTCTTCTGCAACCTAACTCCATATTTGTGCAGTCTATAAAGGTGGAAGAGCTGAATGTATCAAACCCTGGGCCTGTGCTATATGGTTTCTATAGTGTTCCACCGCTTAATAGTGTGACGACTTGGTCAGAAACACACAGTGCCTCTGTTCCAGCTGATTCTCATAAGGAGTGGATATATTACCTAAATAAGGGGTCTCAAATAAGTATATCGTACAGCGTTTCCTCTCCCAGCACGTCTATTTTTCTTATAATTGCTGAAGGTAAAGAAGGCCTTGCTCAGTGGCTTGAAGAGCCAACATATCCTAATACTACATTGTCGTGGAACCTCGTTCATGGAAGTGGCAAGATTCTGCAGGACATATCAACGTCTGATAATTACTATATTTCTGTGGGTAACCTGAACTATGAGGATGTGGAGGTGCAATTAAACTTCACGGTGAATGCTTTGTTGTATGATACAAGTGAAGCTTATTACAAGTGTACCTTCACAGAAACGTCCTGCAGTTTGAAAATTTCGTTTCCCAGTGGAAATGTTGGTGTGCTAACATCTCCTGGTCCAGATCAGGGTATAGACAACCAGTATGTAAAACTGTCATATGGACCAAGATGGGCCACATATATTATTGGTATAGGAGCGATGACTATACTTATGTTATTGGCCTTCAACTTCTTGAACAAGTTCCGCTGTAACAATGAAGATGGAATAAGAGTACAGCATGAGGAGTTCAGACCAGAAAGAGCCCCGTTGCTTTCATACAAAGATGATGATCAATCAAGTTGGGGTTCATCTTATGATTCTGCCTCGAACGATGAGGGGGATCTTGACGAACTTATGGCAGCAGGTTCTCTTGATGGAAAGTCACTTAGAGATGGTGAAAGTAACAATACTCGTCGGCTTTGTGCAATTTGTTTTGATGCTCCTAGGGACTGCTTTTTCCTCCCATGCGGGCACTGTGTGGCTTGTTTTGAATGCGCAACAAGGATAGCGGAAGCTGCGGCTACTTGTCCAATTTGTCGGAGGAACATAAAGAAGGTGAGGAAGATTTTTACAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

478

Amino Acids

52.79

Weight (kDa)

4.79

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APD1-4_N	PF16040	150 - 218	3.8e-25	E3 ubiquitin-protein ligase APD1-4, N-terminal
APD1-4_M	PF16041	243 - 346	1.5e-32	E3 ubiquitin-protein ligase APD1-4, middle domain
zf-C3HC4_3	PF13920	424 - 472	4.7e-14	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	426 - 466	2.3e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01450
fragaria_vesca	FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430
malus_domestica	MD03G1070000.v1.1 MD04G1153100.v1.1 MD11G1073800.v1.1 MD12G1166600.v1.1
prunus_persica	Prupe.6G057100_v2.0.a1 Prupe.6G057100_v2.0.a1 Prupe.6G277400_v2.0.a1 Prupe.6G277400_v2.0.a1
pyrus_communis	pycom03g05570 pycom11g06120 pycom12g15850
rosa_chinensis	RchiOBHm_Chr3g0463121 RchiOBHm_Chr5g0069661
rosa_laevigata	RLG00000024811 RLG00000036082
rosa_multiflora	Rmu_sc0000738.1_g000037 Rmu_sc0000766.1_g000040 Rmu_sc0008595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011420 Rroxscaffold_6G00416950
rosa_rugosa	Rorug03G0061500 Rorug03G0061600 Rorug03G0061700 Rorug05G0399000 Rorug05G0399100
rosa_samantha	Rh3AG119800 Rh3BG124200 Rh3CG126200 Rh3DG125200 Rh5AG455800 Rh5BG474800 Rh5CG498200 Rh5DG486300
rosa_wichuraiana	Rw3G010130 Rw5G042530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
AasI	GACNNNNNNGTC	1 cut(s)	502
Acc16I	TGCGCA	1 cut(s)	1354
Acc36I	ACCTGC	3 cut(s)	115, 184, 1211
AccB1I	GGYRCC	2 cut(s)	95, 101
AccII	CGCG	2 cut(s)	132, 251
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	8 cut(s)	130, 191, 249, 482, 1063, 1326, 1367, 1376
AclWI	GGATC	1 cut(s)	1206
AcsI	RAATTY	1 cut(s)	891
AcuI	CTGAAG	1 cut(s)	657
AcvI	CACGTG	1 cut(s)	273
AcyI	GRCGYC	2 cut(s)	96, 102
AdeI	CACNNNGTG	2 cut(s)	518, 1336
AfaI	GTAC	5 cut(s)	158, 341, 593, 862, 1092
AfiI	CCNNNNNNNGG	4 cut(s)	136, 184, 568, 944
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	5 cut(s)	668, 889, 1045, 1054, 1349
AhdI	GACNNNNNGTC	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	615
AjnI	CCWGG	2 cut(s)	445, 931
AluBI	AGCT	5 cut(s)	361, 430, 533, 848, 1373
AluI	AGCT	5 cut(s)	361, 430, 533, 848, 1373
Alw26I	GTCTC	3 cut(s)	239, 344, 579
AlwI	GGATC	1 cut(s)	1206
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	5 cut(s)	364, 449, 649, 990, 1038
ApeKI	GCWGC	2 cut(s)	1217, 1373
ApoI	RAATTY	1 cut(s)	891
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
Asp700I	GAANNNNTTC	1 cut(s)	1058
AspA2I	CCTAGG	1 cut(s)	1301
AspLEI	GCGC	3 cut(s)	98, 104, 1355
AspS9I	GGNCC	7 cut(s)	127, 276, 365, 449, 935, 980, 990
AsuHPI	GGTGA	4 cut(s)	289, 829, 1265, 1426
AvaII	GGWCC	4 cut(s)	127, 276, 935, 980
AvrII	CCTAGG	1 cut(s)	1301
BaeGI	GKGCMC	1 cut(s)	1332
BaeI	ACNNNNGTAYC	2 cut(s)	844, 877
BanI	GGYRCC	2 cut(s)	95, 101
BanII	GRGCYC	1 cut(s)	1123
BbrPI	CACGTG	1 cut(s)	273
BbsI	GAAGAC	2 cut(s)	21, 102
BbvI	GCAGC	2 cut(s)	1229, 1360
BccI	CCATC	5 cut(s)	55, 981, 1073, 1226, 1244
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BciT130I	CCWGG	2 cut(s)	447, 933
BclI	TGATCA	1 cut(s)	1147
BcoDI	GTCTC	3 cut(s)	239, 344, 579
BfaI	CTAG	1 cut(s)	1302
BfmI	CTRYAG	3 cut(s)	469, 731, 880
BfoI	RGCGCY	2 cut(s)	99, 105
BfuAI	ACCTGC	3 cut(s)	115, 184, 1211
BisI	GCNGC	4 cut(s)	191, 1218, 1374, 1377
BlnI	CCTAGG	1 cut(s)	1301
BlsI	GCNGC	4 cut(s)	192, 1219, 1375, 1378
Bme1390I	CCNGG	2 cut(s)	447, 933
Bme18I	GGWCC	4 cut(s)	127, 276, 935, 980
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	615
BmgT120I	GGNCC	7 cut(s)	127, 276, 365, 449, 935, 980, 990
BmiI	GGNNCC	4 cut(s)	97, 103, 189, 704
BmrFI	CCNGG	2 cut(s)	447, 933
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	4 cut(s)	52, 190, 291, 1285
BmuI	ACTGGG	1 cut(s)	897
BpiI	GAAGAC	2 cut(s)	21, 102
BsaAI	YACGTR	1 cut(s)	273
BsaBI	GATNNNNATC	2 cut(s)	150, 1146
BsaHI	GRCGYC	2 cut(s)	96, 102
BsaI	GGTCTC	3 cut(s)	239, 344, 579
BsaJI	CCNNGG	3 cut(s)	445, 446, 1301
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 184, 568, 944
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	903, 958
Bse8I	GATNNNNATC	2 cut(s)	150, 1146
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	447, 933
BseDI	CCNNGG	3 cut(s)	445, 446, 1301
BseGI	GGATG	3 cut(s)	69, 181, 796
BseJI	GATNNNNATC	2 cut(s)	150, 1146
BseLI	CCNNNNNNNGG	4 cut(s)	136, 184, 568, 944
BseMII	CTCAG	3 cut(s)	26, 339, 671
BseNI	ACTGG	2 cut(s)	903, 958
BseRI	GAGGAG	4 cut(s)	25, 152, 284, 1115
BseSI	GKGCMC	1 cut(s)	1332
BseXI	GCAGC	2 cut(s)	1229, 1360
BseYI	CCCAGC	1 cut(s)	608
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	2 cut(s)	132, 251
BshFI	GGCC	5 cut(s)	366, 451, 651, 992, 1040
BshNI	GGYRCC	2 cut(s)	95, 101
BsiSI	CCGG	4 cut(s)	93, 99, 178, 185
BslFI	GGGAC	2 cut(s)	92, 1319
BslI	CCNNNNNNNGG	4 cut(s)	136, 184, 568, 944
BsmAI	GTCTC	3 cut(s)	239, 344, 579
BsmFI	GGGAC	2 cut(s)	92, 1319
BsmI	GAATGC	2 cut(s)	826, 1355
BsnI	GGCC	5 cut(s)	366, 451, 651, 992, 1040
Bso31I	GGTCTC	3 cut(s)	239, 344, 579
Bsp1286I	GDGCHC	2 cut(s)	1123, 1332
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	145, 940, 1147, 1198
BspACI	CCGC	8 cut(s)	130, 191, 249, 482, 1063, 1326, 1367, 1376
BspANI	GGCC	5 cut(s)	366, 451, 651, 992, 1040
BspCNI	CTCAG	3 cut(s)	25, 340, 670
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	2 cut(s)	132, 251
BspLI	GGNNCC	4 cut(s)	97, 103, 189, 704
BspMAI	CTGCAG	2 cut(s)	735, 884
BspMI	ACCTGC	3 cut(s)	115, 184, 1211
BspPI	GGATC	1 cut(s)	1206
BspQI	GCTCTTC	2 cut(s)	420, 663
BspT107I	GGYRCC	2 cut(s)	95, 101
BspTNI	GGTCTC	3 cut(s)	239, 344, 579
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	903, 958
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	3 cut(s)	445, 446, 1301
BssMI	GATC	4 cut(s)	145, 940, 1147, 1198
BssNI	GRCGYC	2 cut(s)	96, 102
BssT1I	CCWWGG	1 cut(s)	1301
Bst2UI	CCWGG	2 cut(s)	447, 933
Bst4CI	ACNGT	5 cut(s)	518, 817, 972, 1334, 1432
Bst6I	CTCTTC	4 cut(s)	129, 387, 420, 663
BstACI	GRCGYC	2 cut(s)	96, 102
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	100, 1328
BstDEI	CTNAG	5 cut(s)	12, 348, 355, 657, 1244
BstEII	GGTNACC	1 cut(s)	773
BstENI	CCTNNNNNAGG	1 cut(s)	566
BstF5I	GGATG	3 cut(s)	69, 181, 796
BstFNI	CGCG	2 cut(s)	132, 251
BstH2I	RGCGCY	2 cut(s)	99, 105
BstHHI	GCGC	3 cut(s)	98, 104, 1355
BstKTI	GATC	4 cut(s)	148, 943, 1150, 1201
BstMAI	GTCTC	3 cut(s)	239, 344, 579
BstMBI	GATC	4 cut(s)	145, 940, 1147, 1198
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 670, 1373
BstNI	CCWGG	2 cut(s)	447, 933
BstPI	GGTNACC	1 cut(s)	773
BstSCI	CCNGG	2 cut(s)	445, 931
BstSFI	CTRYAG	3 cut(s)	469, 731, 880
BstSLI	GKGCMC	1 cut(s)	1332
BstUI	CGCG	2 cut(s)	132, 251
BstV1I	GCAGC	2 cut(s)	1229, 1360
BstV2I	GAAGAC	2 cut(s)	21, 102
BstX2I	RGATCY	1 cut(s)	1198
BstYI	RGATCY	1 cut(s)	1198
BsuRI	GGCC	5 cut(s)	366, 451, 651, 992, 1040
BtgZI	GCGATG	1 cut(s)	1031
BtrI	CACGTC	1 cut(s)	615
BtsCI	GGATG	3 cut(s)	69, 181, 796
BtsIMutI	CAGTG	4 cut(s)	523, 665, 910, 1330
BveI	ACCTGC	3 cut(s)	115, 184, 1211
Cac8I	GCNNGC	2 cut(s)	100, 1328
CfoI	GCGC	3 cut(s)	98, 104, 1355
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	7 cut(s)	127, 276, 365, 449, 935, 980, 990
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	5 cut(s)	157, 340, 592, 861, 1091
CviAII	CATG	3 cut(s)	713, 1097, 1323
CviQI	GTAC	5 cut(s)	157, 340, 592, 861, 1091
DdeI	CTNAG	5 cut(s)	12, 348, 355, 657, 1244
DinI	GGCGCC	2 cut(s)	97, 103
DpnI	GATC	4 cut(s)	147, 942, 1149, 1200
DpnII	GATC	4 cut(s)	145, 940, 1147, 1198
DraIII	CACNNNGTG	2 cut(s)	518, 1336
DrdI	GACNNNNNNGTC	1 cut(s)	502
DriI	GACNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	502
Eam1104I	CTCTTC	4 cut(s)	129, 387, 420, 663
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	4 cut(s)	129, 387, 420, 663
Eco130I	CCWWGG	1 cut(s)	1301
Eco147I	AGGCCT	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	1123
Eco31I	GGTCTC	3 cut(s)	239, 344, 579
Eco47I	GGWCC	4 cut(s)	127, 276, 935, 980
Eco57I	CTGAAG	1 cut(s)	657
Eco72I	CACGTG	1 cut(s)	273
Eco91I	GGTNACC	1 cut(s)	773
EcoNI	CCTNNNNNAGG	1 cut(s)	566
EcoO65I	GGTNACC	1 cut(s)	773
EcoRII	CCWGG	2 cut(s)	445, 931
EcoT14I	CCWWGG	1 cut(s)	1301
EcoT38I	GRGCYC	1 cut(s)	1123
EgeI	GGCGCC	2 cut(s)	97, 103
EheI	GGCGCC	2 cut(s)	97, 103
ErhI	CCWWGG	1 cut(s)	1301
FaeI	CATG	3 cut(s)	716, 1100, 1326
FalI	AAGNNNNNCTT	6 cut(s)	636, 668, 832, 864, 848, 880
FaqI	GGGAC	2 cut(s)	92, 1319
FatI	CATG	3 cut(s)	712, 1096, 1322
FauI	CCCGC	1 cut(s)	1319
FauNDI	CATATG	1 cut(s)	976
FbaI	TGATCA	1 cut(s)	1147
Fnu4HI	GCNGC	4 cut(s)	191, 1218, 1374, 1377
FokI	GGATG	3 cut(s)	56, 168, 803
FriOI	GRGCYC	1 cut(s)	1123
Fsp4HI	GCNGC	4 cut(s)	191, 1218, 1374, 1377
FspBI	CTAG	1 cut(s)	1302
FspI	TGCGCA	1 cut(s)	1354
GlaI	GCGC	3 cut(s)	97, 103, 1354
GluI	GCNGC	4 cut(s)	191, 1218, 1374, 1377
GsaI	CCCAGC	1 cut(s)	612
HaeII	RGCGCY	2 cut(s)	99, 105
HaeIII	GGCC	5 cut(s)	366, 451, 651, 992, 1040
HapII	CCGG	4 cut(s)	93, 99, 178, 185
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	3 cut(s)	98, 104, 1355
Hin1I	GRCGYC	2 cut(s)	96, 102
Hin1II	CATG	3 cut(s)	716, 1100, 1326
Hin6I	GCGC	3 cut(s)	96, 102, 1353
HinP1I	GCGC	3 cut(s)	96, 102, 1353
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	846
HinfI	GANTC	7 cut(s)	222, 237, 328, 379, 536, 727, 1175
HpaII	CCGG	4 cut(s)	93, 99, 178, 185
HphI	GGTGA	4 cut(s)	289, 829, 1265, 1426
Hpy166II	GTNNAC	3 cut(s)	199, 340, 861
Hpy188I	TCNGA	7 cut(s)	15, 209, 349, 508, 751, 1109, 1398
Hpy188III	TCNNGA	6 cut(s)	185, 234, 938, 1051, 1202, 1229
Hpy8I	GTNNAC	3 cut(s)	199, 340, 861
Hpy99I	CGWCG	1 cut(s)	1275
HpyAV	CCTTC	6 cut(s)	310, 632, 641, 874, 1051, 1405
HpyCH4III	ACNGT	5 cut(s)	518, 817, 972, 1334, 1432
HpyCH4IV	ACGT	4 cut(s)	272, 614, 746, 875
HpyCH4V	TGCA	7 cut(s)	282, 388, 409, 733, 802, 882, 1283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 670, 1373
HpyF3I	CTNAG	5 cut(s)	12, 348, 355, 657, 1244
HpySE526I	ACGT	4 cut(s)	272, 614, 746, 875
Hsp92I	GRCGYC	2 cut(s)	96, 102
Hsp92II	CATG	3 cut(s)	716, 1100, 1326
HspAI	GCGC	3 cut(s)	96, 102, 1353
KasI	GGCGCC	2 cut(s)	95, 101
Kpn2I	TCCGGA	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	1147
Kzo9I	GATC	4 cut(s)	145, 940, 1147, 1198
LguI	GCTCTTC	2 cut(s)	420, 663
LmnI	GCTCC	3 cut(s)	187, 1013, 1303
Lsp1109I	GCAGC	2 cut(s)	1229, 1360
LweI	GCATC	4 cut(s)	52, 190, 291, 1285
MaeI	CTAG	1 cut(s)	1302
MaeII	ACGT	4 cut(s)	272, 614, 746, 875
MaeIII	GTNAC	5 cut(s)	493, 773, 1067, 1239, 1259
MalI	GATC	4 cut(s)	147, 942, 1149, 1200
MboI	GATC	4 cut(s)	145, 940, 1147, 1198
MflI	RGATCY	1 cut(s)	1198
MhlI	GDGCHC	2 cut(s)	1123, 1332
MluCI	AATT	7 cut(s)	172, 630, 754, 803, 891, 1284, 1389
Mly113I	GGCGCC	2 cut(s)	96, 102
MlyI	GAGTC	2 cut(s)	231, 373
MmeI	TCCRAC	1 cut(s)	1376
MreI	CGCCGGCG	1 cut(s)	98
MroI	TCCGGA	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	1058
MseI	TTAA	2 cut(s)	486, 806
MslI	CAYNNNNRTG	3 cut(s)	404, 697, 717
MspA1I	CMGCKG	2 cut(s)	533, 1065
MspI	CCGG	4 cut(s)	93, 99, 178, 185
MspR9I	CCNGG	2 cut(s)	447, 933
Mva1269I	GAATGC	2 cut(s)	826, 1355
MvaI	CCWGG	2 cut(s)	447, 933
MvnI	CGCG	2 cut(s)	132, 251
MwoI	GCNNNNNNNGC	3 cut(s)	187, 670, 1373
NaeI	GCCGGC	1 cut(s)	100
NarI	GGCGCC	2 cut(s)	96, 102
NdeI	CATATG	1 cut(s)	976
NdeII	GATC	4 cut(s)	145, 940, 1147, 1198
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	3 cut(s)	716, 1100, 1326
NlaIV	GGNNCC	4 cut(s)	97, 103, 189, 704
NmuCI	GTSAC	2 cut(s)	493, 1239
NsbI	TGCGCA	1 cut(s)	1354
PasI	CCCWGGG	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	651
PciSI	GCTCTTC	2 cut(s)	420, 663
PctI	GAATGC	2 cut(s)	826, 1355
PdiI	GCCGGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	1058
PfeI	GAWTC	5 cut(s)	237, 328, 536, 727, 1175
PflFI	GACNNNGTC	2 cut(s)	250, 502
PkrI	GCNGC	4 cut(s)	192, 1219, 1375, 1378
PleI	GAGTC	2 cut(s)	230, 373
PluTI	GGCGCC	2 cut(s)	99, 105
PmaCI	CACGTG	1 cut(s)	273
PmlI	CACGTG	1 cut(s)	273
PpsI	GAGTC	2 cut(s)	230, 373
Ppu21I	YACGTR	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	629
Psp6I	CCWGG	2 cut(s)	445, 931
PspCI	CACGTG	1 cut(s)	273
PspEI	GGTNACC	1 cut(s)	773
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	2 cut(s)	445, 931
PspN4I	GGNNCC	4 cut(s)	97, 103, 189, 704
PspPI	GGNCC	7 cut(s)	127, 276, 365, 449, 935, 980, 990
PstI	CTGCAG	2 cut(s)	735, 884
PsuI	RGATCY	1 cut(s)	1198
PsyI	GACNNNGTC	2 cut(s)	250, 502
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	5 cut(s)	158, 341, 593, 862, 1092
RsaNI	GTAC	5 cut(s)	157, 340, 592, 861, 1091
RseI	CAYNNNNRTG	3 cut(s)	404, 697, 717
SapI	GCTCTTC	2 cut(s)	420, 663
SaqAI	TTAA	2 cut(s)	486, 806
SatI	GCNGC	4 cut(s)	191, 1218, 1374, 1377
Sau3AI	GATC	4 cut(s)	145, 940, 1147, 1198
Sau96I	GGNCC	7 cut(s)	127, 276, 365, 449, 935, 980, 990
SchI	GAGTC	2 cut(s)	231, 373
ScrFI	CCNGG	2 cut(s)	447, 933
SduI	GDGCHC	2 cut(s)	1123, 1332
SfaNI	GCATC	4 cut(s)	52, 190, 291, 1285
SfcI	CTRYAG	3 cut(s)	469, 731, 880
SfoI	GGCGCC	2 cut(s)	97, 103
SgrAI	CRCCGGYG	1 cut(s)	98
SinI	GGWCC	4 cut(s)	127, 276, 935, 980
SmiMI	CAYNNNNRTG	3 cut(s)	404, 697, 717
Sse9I	AATT	7 cut(s)	172, 630, 754, 803, 891, 1284, 1389
SseBI	AGGCCT	1 cut(s)	651
SsiI	CCGC	8 cut(s)	130, 191, 249, 482, 1063, 1326, 1367, 1376
SspDI	GGCGCC	2 cut(s)	95, 101
SspMI	CTAG	1 cut(s)	1302
StuI	AGGCCT	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	445, 931
StyI	CCWWGG	1 cut(s)	1301
TaaI	ACNGT	5 cut(s)	518, 817, 972, 1334, 1432
TaiI	ACGT	4 cut(s)	275, 617, 749, 878
TaqI	TCGA	3 cut(s)	240, 377, 1184
TasI	AATT	7 cut(s)	172, 630, 754, 803, 891, 1284, 1389
TatI	WGTACW	1 cut(s)	1090
TauI	GCSGC	2 cut(s)	193, 1379
TfiI	GAWTC	5 cut(s)	237, 328, 536, 727, 1175
Tru1I	TTAA	2 cut(s)	486, 806
Tru9I	TTAA	2 cut(s)	486, 806
TscAI	CASTG	4 cut(s)	523, 665, 910, 1337
TseFI	GTSAC	2 cut(s)	493, 1239
TseI	GCWGC	2 cut(s)	1217, 1373
Tsp45I	GTSAC	2 cut(s)	493, 1239
TspDTI	ATGAA	4 cut(s)	701, 1089, 1122, 1155
TspRI	CASTG	4 cut(s)	523, 665, 910, 1337
Tth111I	GACNNNGTC	2 cut(s)	250, 502
VpaK11BI	GGWCC	4 cut(s)	127, 276, 935, 980
XagI	CCTNNNNNAGG	1 cut(s)	566
XapI	RAATTY	1 cut(s)	891
XmaJI	CCTAGG	1 cut(s)	1301
XmnI	GAANNNNTTC	1 cut(s)	1058
XspI	CTAG	1 cut(s)	1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.