Rroxscaffold_1G00011420

Domain of unknown function (DUF4792)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001521
Physical Location & Seq
Reverse (-)
14428324 .. 14431924
3601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00011420.1

Sequence Viewer

Length: 1377 bp
ATGGAAGACCCAGAAACAGATCGTAGCCACCATGAATCCGTTCCTTCTTCTTCTTCGTCTTCTTCTTCTTCTTCTTCATCATCTACCTCACAGGTCCAAGAACAAACAGCGCAGCAACCAGAGCAGAGAAGTTCAACTACGGCTTTCTCTTACCGTGTCAATGTATTGATAGCTGATGTAGCAGCATTTGACATGAAGGATGATCTTTGGTCTGGCTTTATCGTGCTCGTCACCTTTTGGTTCTTTGCATCCATGACTTTGATTCTTGGTTTCTTTGGATCCGCCGATTTACAACTGGGCCCGAATTGCTCACGTCTCATACGAACTAATCCATTCTTTGTTCAGACCATTAAGGCACAGGAACTTCAGGGTACAAAACCCGGGTCAATTTTATATGGATTCCACACACCTCCTCCTCTGGATGTTGAAACAGCTTGGACTGAAACACATCATACACTTGAATGGATTTACTTTCTAAACAAAGGGTCTAGAATAGATATATATTACCATGTCAAACCTTCAAGTTCCTCGCCTTTAACACTTGTAATTGCAGAAGGTAGAAAAAGCCTGGTTGAATGGATAGAGGATCCATCATATGGTAATGCAACATTGTCTTGGAATATAATTTATGGAAGTGGTAAGATCCAACAGGTAATTTCAGAGTCTTCTAATTATTATATTGCAGTAGGGAACTTGAACCCTGAGGATGTTGAGGTAGAGTTGGAATTCAACATAAAGTCCACTCTTTATAACACGACCCAGGCGTATTACAGGTGCTCCATACATAATCAGTACTGTAGCTTAAAGCTTTCCCTCTTAGGGGCAACTTTTGGTGTCTTAACTTCTCCAGCTCCTGAAGAGGGTATTCAGGAGGATGACTGGTATGTCAAACTGTCATATGGACCACGATGGGTCATCTATTTTCTTGGATCAGGTGTGATGACTGTGCTCCTGTTAATGGCCCTTAGATTTTGTAACATATTCCAAAATGCTGGTGAGGATAGAACAGATTTTCAAGTAGGGGAGGCATCACCTGTACGAACCCCATTGCTTTTACCTAAAGATGATGATGCTTTGAGTTGGGGTTCATCTTATGAATGTATTTCAAATGATGAAGAGGATTTGGAAGAGTTCCTTGGAGTGAGTTCCCTTGAAGGAAAGTCGATAAATGAAGGGAACGACAACAATACTCAGCGTCTTTGTGTCATTTGCTTTGATGGGCCGAGAGACTGCTTCTTTCTTCCATGTGGGCACTGTGCTACCTGTTTTACTTGTGGAACAAGGATTTCTGAAGAGGCTGGAACTTGTCCCATTTGTCGTAGGAAGATGAAGAAAGTGAGGAAGATTTTTTTCAGTTTGAGGCTTTGTGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

458

Amino Acids

51.21

Weight (kDa)

4.87

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APD1-4_N PF16040 128 - 190 4.2e-15 E3 ubiquitin-protein ligase APD1-4, N-terminal
APD1-4_M PF16041 215 - 320 1.2e-32 E3 ubiquitin-protein ligase APD1-4, middle domain
zf-C3HC4_3 PF13920 398 - 446 2.4e-13 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 400 - 440 6.1e-06 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
AasI GACNNNNNNGTC 1 cut(s) 884
AccB7I CCANNNNNTGG 1 cut(s) 596
AciI CCGC 1 cut(s) 282
AclWI GGATC 6 cut(s) 273, 286, 581, 594, 637, 937
AcsI RAATTY 1 cut(s) 725
AcuI CTGAAG 3 cut(s) 350, 876, 1311
AfaI GTAC 3 cut(s) 373, 794, 1038
AfiI CCNNNNNNNGG 5 cut(s) 596, 819, 820, 860, 958
AjiI CACGTC 1 cut(s) 314
AjnI CCWGG 2 cut(s) 567, 759
AjuI GAANNNNNNNTTGG 2 cut(s) 1119, 1151
AluBI AGCT 5 cut(s) 173, 434, 801, 808, 851
AluI AGCT 5 cut(s) 173, 434, 801, 808, 851
Alw21I GWGCWC 3 cut(s) 228, 779, 951
Alw26I GTCTC 2 cut(s) 320, 1221
AlwI GGATC 6 cut(s) 273, 286, 581, 594, 637, 937
AlwNI CAGNNNCTG 1 cut(s) 854
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 3 cut(s) 298, 960, 1220
ApaI GGGCCC 1 cut(s) 302
ApeKI GCWGC 2 cut(s) 112, 182
ApoI RAATTY 1 cut(s) 725
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
Asp700I GAANNNNTTC 1 cut(s) 39
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 6 cut(s) 94, 298, 299, 902, 961, 1220
AsuC2I CCSGG 2 cut(s) 381, 382
AsuHPI GGTGA 3 cut(s) 223, 1007, 1023
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 2 cut(s) 94, 902
AxyI CCTNAGG 1 cut(s) 702
BaeGI GKGCMC 2 cut(s) 302, 1254
BamHI GGATCC 2 cut(s) 278, 586
BanII GRGCYC 1 cut(s) 302
BarI GAAGNNNNNNTAC 2 cut(s) 121, 153
BbsI GAAGAC 3 cut(s) 12, 51, 657
Bbv12I GWGCWC 3 cut(s) 228, 779, 951
BbvI GCAGC 2 cut(s) 124, 194
BccI CCATC 3 cut(s) 598, 903, 1211
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 2 cut(s) 569, 761
BcnI CCSGG 2 cut(s) 381, 382
BcoDI GTCTC 2 cut(s) 320, 1221
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 1 cut(s) 796
BisI GCNGC 2 cut(s) 113, 183
BlsI GCNGC 2 cut(s) 114, 184
BmcAI AGTACT 1 cut(s) 794
Bme1390I CCNGG 4 cut(s) 381, 382, 569, 761
Bme18I GGWCC 2 cut(s) 94, 902
BmeT110I CYCGRG 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 314
BmgT120I GGNCC 6 cut(s) 94, 298, 299, 902, 961, 1220
BmiI GGNNCC 3 cut(s) 280, 300, 588
BmrFI CCNGG 4 cut(s) 381, 382, 569, 761
BmrI ACTGGG 1 cut(s) 305
BmsI GCATC 3 cut(s) 257, 1037, 1060
BmuI ACTGGG 1 cut(s) 305
BpiI GAAGAC 3 cut(s) 12, 51, 657
BpmI CTGGAG 1 cut(s) 831
BpuMI CCSGG 2 cut(s) 381, 382
BsaJI CCNNGG 3 cut(s) 380, 759, 1135
BsaXI ACNNNNNCTCC 4 cut(s) 397, 427, 761, 791
Bsc4I CCNNNNNNNGG 5 cut(s) 596, 819, 820, 860, 958
Bse1I ACTGG 2 cut(s) 300, 884
Bse21I CCTNAGG 1 cut(s) 702
Bse3DI GCAATG 1 cut(s) 1046
BseBI CCWGG 2 cut(s) 569, 761
BseDI CCNNGG 3 cut(s) 380, 759, 1135
BseGI GGATG 5 cut(s) 205, 248, 427, 712, 880
BseLI CCNNNNNNNGG 5 cut(s) 596, 819, 820, 860, 958
BseMI GCAATG 1 cut(s) 1046
BseMII CTCAG 2 cut(s) 693, 1205
BseNI ACTGG 2 cut(s) 300, 884
BseRI GAGGAG 2 cut(s) 402, 405
BseSI GKGCMC 2 cut(s) 302, 1254
BseXI GCAGC 2 cut(s) 124, 194
BshFI GGCC 3 cut(s) 300, 962, 1222
BsiHKAI GWGCWC 3 cut(s) 228, 779, 951
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 1293
BslI CCNNNNNNNGG 5 cut(s) 596, 819, 820, 860, 958
BsmAI GTCTC 2 cut(s) 320, 1221
BsmBI CGTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 1293
BsnI GGCC 3 cut(s) 300, 962, 1222
BsoBI CYCGRG 1 cut(s) 380
Bsp120I GGGCCC 1 cut(s) 298
Bsp1286I GDGCHC 5 cut(s) 228, 302, 779, 951, 1254
Bsp143I GATC 6 cut(s) 19, 202, 278, 586, 642, 929
BspACI CCGC 1 cut(s) 282
BspANI GGCC 3 cut(s) 300, 962, 1222
BspCNI CTCAG 2 cut(s) 694, 1204
BspLI GGNNCC 3 cut(s) 280, 300, 588
BspPI GGATC 6 cut(s) 273, 286, 581, 594, 637, 937
BsrDI GCAATG 1 cut(s) 1046
BsrI ACTGG 2 cut(s) 300, 884
BssECI CCNNGG 3 cut(s) 380, 759, 1135
BssMI GATC 6 cut(s) 19, 202, 278, 586, 642, 929
BssT1I CCWWGG 1 cut(s) 1135
Bst2UI CCWGG 2 cut(s) 569, 761
Bst4CI ACNGT 5 cut(s) 155, 797, 894, 946, 1256
Bst6I CTCTTC 4 cut(s) 852, 1110, 1122, 1287
BstDEI CTNAG 4 cut(s) 702, 817, 965, 1191
BstF5I GGATG 5 cut(s) 205, 248, 427, 712, 880
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 6 cut(s) 22, 205, 281, 589, 645, 932
BstMAI GTCTC 2 cut(s) 320, 1221
BstMBI GATC 6 cut(s) 19, 202, 278, 586, 642, 929
BstMWI GCNNNNNNNGC 3 cut(s) 121, 179, 306
BstNI CCWGG 2 cut(s) 569, 761
BstSCI CCNGG 4 cut(s) 379, 380, 567, 759
BstSFI CTRYAG 1 cut(s) 796
BstSLI GKGCMC 2 cut(s) 302, 1254
BstV1I GCAGC 2 cut(s) 124, 194
BstV2I GAAGAC 3 cut(s) 12, 51, 657
BstX2I RGATCY 3 cut(s) 278, 586, 642
BstXI CCANNNNNNTGG 1 cut(s) 992
BstYI RGATCY 3 cut(s) 278, 586, 642
Bsu36I CCTNAGG 1 cut(s) 702
BsuRI GGCC 3 cut(s) 300, 962, 1222
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 5 cut(s) 205, 248, 427, 712, 880
BtsIMutI CAGTG 1 cut(s) 1252
CaiI CAGNNNCTG 1 cut(s) 854
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 6 cut(s) 94, 298, 299, 902, 961, 1220
Cfr9I CCCGGG 1 cut(s) 380
CseI GACGC 1 cut(s) 1184
Csp6I GTAC 3 cut(s) 372, 793, 1037
CviAII CATG 5 cut(s) 32, 193, 253, 509, 1245
CviQI GTAC 3 cut(s) 372, 793, 1037
DdeI CTNAG 4 cut(s) 702, 817, 965, 1191
DpnI GATC 6 cut(s) 21, 204, 280, 588, 644, 931
DpnII GATC 6 cut(s) 19, 202, 278, 586, 642, 929
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
Eam1104I CTCTTC 4 cut(s) 852, 1110, 1122, 1287
EarI CTCTTC 4 cut(s) 852, 1110, 1122, 1287
EciI GGCGGA 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 1135
Eco24I GRGCYC 1 cut(s) 302
Eco47I GGWCC 2 cut(s) 94, 902
Eco57I CTGAAG 3 cut(s) 350, 876, 1311
Eco81I CCTNAGG 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 380
EcoRI GAATTC 1 cut(s) 725
EcoRII CCWGG 2 cut(s) 567, 759
EcoT14I CCWWGG 1 cut(s) 1135
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 1135
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 5 cut(s) 35, 196, 256, 512, 1248
FalI AAGNNNNNCTT 2 cut(s) 1119, 1151
FaqI GGGAC 1 cut(s) 1293
FatI CATG 5 cut(s) 31, 192, 252, 508, 1244
FauNDI CATATG 2 cut(s) 595, 898
Fnu4HI GCNGC 2 cut(s) 113, 183
FokI GGATG 5 cut(s) 212, 235, 434, 719, 887
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 2 cut(s) 113, 183
FspBI CTAG 1 cut(s) 489
GlaI GCGC 1 cut(s) 111
GluI GCNGC 2 cut(s) 113, 183
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 3 cut(s) 300, 962, 1222
HapII CCGG 1 cut(s) 381
HgaI GACGC 1 cut(s) 1184
HhaI GCGC 1 cut(s) 112
Hin1II CATG 5 cut(s) 35, 196, 256, 512, 1248
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 4 cut(s) 35, 262, 399, 662
HpaII CCGG 1 cut(s) 381
HphI GGTGA 3 cut(s) 223, 1007, 1023
Hpy166II GTNNAC 1 cut(s) 741
Hpy188I TCNGA 3 cut(s) 345, 661, 1291
Hpy188III TCNNGA 4 cut(s) 419, 489, 854, 869
Hpy8I GTNNAC 1 cut(s) 741
HpyAV CCTTC 6 cut(s) 54, 190, 528, 548, 1148, 1166
HpyCH4III ACNGT 5 cut(s) 155, 797, 894, 946, 1256
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 4 cut(s) 248, 551, 605, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 179, 306
HpyF3I CTNAG 4 cut(s) 702, 817, 965, 1191
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 5 cut(s) 35, 196, 256, 512, 1248
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 6 cut(s) 19, 202, 278, 586, 642, 929
LmnI GCTCC 3 cut(s) 782, 856, 954
Lsp1109I GCAGC 2 cut(s) 124, 194
LweI GCATC 3 cut(s) 257, 1037, 1060
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 2 cut(s) 229, 974
MalI GATC 6 cut(s) 21, 204, 280, 588, 644, 931
MboI GATC 6 cut(s) 19, 202, 278, 586, 642, 929
MflI RGATCY 3 cut(s) 278, 586, 642
MhlI GDGCHC 5 cut(s) 228, 302, 779, 951, 1254
MluCI AATT 7 cut(s) 304, 387, 546, 624, 654, 670, 725
MlyI GAGTC 1 cut(s) 671
MmeI TCCRAC 2 cut(s) 670, 702
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 5 cut(s) 351, 536, 803, 839, 956
MslI CAYNNNNRTG 1 cut(s) 460
MspI CCGG 1 cut(s) 381
MspR9I CCNGG 4 cut(s) 381, 382, 569, 761
MvaI CCWGG 2 cut(s) 569, 761
MwoI GCNNNNNNNGC 3 cut(s) 121, 179, 306
NciI CCSGG 2 cut(s) 381, 382
NdeI CATATG 2 cut(s) 595, 898
NdeII GATC 6 cut(s) 19, 202, 278, 586, 642, 929
NlaIII CATG 5 cut(s) 35, 196, 256, 512, 1248
NlaIV GGNNCC 3 cut(s) 280, 300, 588
NmeAIII GCCGAG 1 cut(s) 1248
NmuCI GTSAC 1 cut(s) 229
PcsI WCGNNNNNNNCGW 2 cut(s) 319, 761
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 3 cut(s) 35, 262, 399
PflMI CCANNNNNTGG 1 cut(s) 596
PkrI GCNGC 2 cut(s) 114, 184
PleI GAGTC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 670
PsiI TTATAA 1 cut(s) 750
Psp6I CCWGG 2 cut(s) 567, 759
PspGI CCWGG 2 cut(s) 567, 759
PspN4I GGNNCC 3 cut(s) 280, 300, 588
PspOMI GGGCCC 1 cut(s) 298
PspPI GGNCC 6 cut(s) 94, 298, 299, 902, 961, 1220
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 3 cut(s) 278, 586, 642
RsaI GTAC 3 cut(s) 373, 794, 1038
RsaNI GTAC 3 cut(s) 372, 793, 1037
RseI CAYNNNNRTG 1 cut(s) 460
SaqAI TTAA 5 cut(s) 351, 536, 803, 839, 956
SatI GCNGC 2 cut(s) 113, 183
Sau3AI GATC 6 cut(s) 19, 202, 278, 586, 642, 929
Sau96I GGNCC 6 cut(s) 94, 298, 299, 902, 961, 1220
ScaI AGTACT 1 cut(s) 794
SchI GAGTC 1 cut(s) 671
ScrFI CCNGG 4 cut(s) 381, 382, 569, 761
SduI GDGCHC 5 cut(s) 228, 302, 779, 951, 1254
SfaNI GCATC 3 cut(s) 257, 1037, 1060
SfcI CTRYAG 1 cut(s) 796
SinI GGWCC 2 cut(s) 94, 902
SmaI CCCGGG 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 460
Sse9I AATT 7 cut(s) 304, 387, 546, 624, 654, 670, 725
SsiI CCGC 1 cut(s) 282
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 4 cut(s) 379, 380, 567, 759
StyI CCWWGG 1 cut(s) 1135
TaaI ACNGT 5 cut(s) 155, 797, 894, 946, 1256
TaiI ACGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 1163
TasI AATT 7 cut(s) 304, 387, 546, 624, 654, 670, 725
TatI WGTACW 1 cut(s) 792
TfiI GAWTC 3 cut(s) 35, 262, 399
Tru1I TTAA 5 cut(s) 351, 536, 803, 839, 956
Tru9I TTAA 5 cut(s) 351, 536, 803, 839, 956
TscAI CASTG 1 cut(s) 1259
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 112, 182
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 8 cut(s) 48, 66, 209, 1077, 1110, 1128, 1185, 1343
TspGWI ACGGA 1 cut(s) 28
TspMI CCCGGG 1 cut(s) 380
TspRI CASTG 1 cut(s) 1259
Van91I CCANNNNNTGG 1 cut(s) 596
VpaK11BI GGWCC 2 cut(s) 94, 902
XapI RAATTY 1 cut(s) 725
XbaI TCTAGA 1 cut(s) 488
XmaI CCCGGG 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 1 cut(s) 489
ZrmI AGTACT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.