Rorug05G0399100

Domain of unknown function (DUF4792)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001521
Physical Location & Seq
Forward (+)
54869175 .. 54870537
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0399100.1

Sequence Viewer

Length: 996 bp
ATGGCTCCGAAGCGCCGCTCATCATCCAGGTTGATGGTGAAGACCACCAAGCAAGTTGTCAAGGAAACTGTTGAAGTCTCTGTGGTCCAAAGTAAGAAGAGGCAGAAGAAAGTGAATGATGATGAACTACAAGAGTCACCCAATAGTACAATTGACATCGAAACCAAAGAAGAAAACCAGACCGAGAAAATTGAAGTCTCGGTTGACAAAAAGCCAGCCAGGATTGTTGCCATTGAAAGCCAAGAAGAAAGTGAAACCCCAACTGGTGAACAAGACAAAGGGCCAGTCAAGGTTGTTGCCATAGAAACCCCACAAGAACAAGAAGGTGCGACTCCAAATGTTGAAGAGACACAGCCAGAGGAACAAGGCACAGATCCAATTGACAAAGAGCCAGTCAACAAGGATGTTGCCATGGAAACTGAACAAGAACAAGAAGAAAGTGAAACGCAAAACTTTGAAGAAGATAGAGAGCAGGCCAAGACTATTTCCATGGATATCCACGAAGAAAGTGGAACACAAAATTTTGAAGACAAAGAACCAAAGGAGACCCCTATGACTCCTGAGAAGAAAGAAGACAACCAAGCATCCAAGGGTGAAGAGGAGAAGAGTGATGATGTCAAGCAGACCGGAGAAGGAGGGGAGAAGAAAGAAAAGAAGAGAAAGAGGAGATCAACAGGGAAGAATAGAGAGGGAGGAGAGGGGTATAAGAGGTATGTGTATAAAGTGTTGAAGCAGGTGCACCCTGAACTGGGGATGTCAGCAAAGGCCATGGTGGTTCTCAACAATTATATGAATGACATGTTCGAGAGGCTAGCTGATGAGGCAGCAAAGCTGGCCATGTACACGGCGCGAAAGACTCTGTCTTCGAGGGAGATTCAAGGGGCAGTGAAGCTGGTTTTGCCTGGAGAGCTTGGGAAACATGCCATGGCAGAAGGGACCAAGGCTGTGAGCAACTACTTGTCCAAGAATGAAGCAAGGTGTAGAGATAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

331

Amino Acids

37.36

Weight (kDa)

5.09

Isoelectric Point (pI)

60.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 216 - 298 2.6e-18 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 240 - 326 4.4e-06 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 724
Acc36I ACCTGC 1 cut(s) 724
AccBSI CCGCTC 1 cut(s) 18
AccII CGCG 1 cut(s) 850
AciI CCGC 1 cut(s) 16
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 834
AcsI RAATTY 1 cut(s) 520
AfaI GTAC 2 cut(s) 148, 842
AfiI CCNNNNNNNGG 2 cut(s) 748, 749
AflIII ACRYGT 1 cut(s) 798
AgsI TTSAA 8 cut(s) 74, 194, 236, 344, 458, 527, 730, 878
AjnI CCWGG 3 cut(s) 26, 218, 901
AluBI AGCT 4 cut(s) 815, 832, 892, 910
AluI AGCT 4 cut(s) 815, 832, 892, 910
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 4 cut(s) 82, 202, 341, 539
Alw44I GTGCAC 1 cut(s) 737
AlwI GGATC 1 cut(s) 368
AoxI GGCC 4 cut(s) 281, 474, 765, 834
ApaLI GTGCAC 1 cut(s) 737
ApeKI GCWGC 1 cut(s) 824
ApoI RAATTY 1 cut(s) 520
ArsI GACNNNNNNTTYG 6 cut(s) 270, 302, 378, 410, 847, 879
AspLEI GCGC 2 cut(s) 15, 850
AspS9I GGNCC 3 cut(s) 85, 281, 936
AsuHPI GGTGA 4 cut(s) 49, 129, 278, 605
AsuNHI GCTAGC 1 cut(s) 811
AvaII GGWCC 2 cut(s) 85, 936
BaeGI GKGCMC 1 cut(s) 741
BalI TGGCCA 1 cut(s) 836
BbsI GAAGAC 4 cut(s) 47, 534, 579, 855
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 1 cut(s) 836
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 861
BciT130I CCWGG 3 cut(s) 28, 220, 903
BcoDI GTCTC 4 cut(s) 82, 202, 341, 539
BfaI CTAG 1 cut(s) 812
BfoI RGCGCY 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 724
BisI GCNGC 2 cut(s) 16, 825
BlsI GCNGC 2 cut(s) 17, 826
Bme1390I CCNGG 3 cut(s) 28, 220, 903
Bme18I GGWCC 2 cut(s) 85, 936
BmgT120I GGNCC 3 cut(s) 85, 281, 936
BmiI GGNNCC 2 cut(s) 6, 937
BmrFI CCNGG 3 cut(s) 28, 220, 903
BmrI ACTGGG 1 cut(s) 758
BmsI GCATC 1 cut(s) 593
BmtI GCTAGC 1 cut(s) 815
BmuI ACTGGG 1 cut(s) 758
BpiI GAAGAC 4 cut(s) 47, 534, 579, 855
BpmI CTGGAG 1 cut(s) 924
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 6 cut(s) 411, 489, 588, 768, 924, 939
BsaWI WCCGGW 1 cut(s) 626
Bsc4I CCNNNNNNNGG 2 cut(s) 748, 749
Bse1I ACTGG 4 cut(s) 268, 284, 392, 753
BseBI CCWGG 3 cut(s) 28, 220, 903
BseDI CCNNGG 6 cut(s) 411, 489, 588, 768, 924, 939
BseGI GGATG 4 cut(s) 23, 409, 584, 759
BseLI CCNNNNNNNGG 2 cut(s) 748, 749
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 4 cut(s) 268, 284, 392, 753
BseRI GAGGAG 3 cut(s) 614, 679, 708
BseSI GKGCMC 1 cut(s) 741
BseXI GCAGC 1 cut(s) 836
Bsh1236I CGCG 1 cut(s) 850
BshFI GGCC 4 cut(s) 283, 476, 767, 836
BsiHKAI GWGCWC 1 cut(s) 741
BsiSI CCGG 1 cut(s) 627
BslFI GGGAC 1 cut(s) 949
BslI CCNNNNNNNGG 2 cut(s) 748, 749
BsmAI GTCTC 4 cut(s) 82, 202, 341, 539
BsmFI GGGAC 1 cut(s) 949
BsnI GGCC 4 cut(s) 283, 476, 767, 836
Bso31I GGTCTC 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 741
Bsp1407I TGTACA 1 cut(s) 840
Bsp143I GATC 2 cut(s) 373, 668
Bsp19I CCATGG 4 cut(s) 411, 489, 768, 924
BspACI CCGC 1 cut(s) 16
BspANI GGCC 4 cut(s) 283, 476, 767, 836
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 1 cut(s) 850
BspLI GGNNCC 2 cut(s) 6, 937
BspMI ACCTGC 1 cut(s) 724
BspOI GCTAGC 1 cut(s) 815
BspPI GGATC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 840
BsrI ACTGG 4 cut(s) 268, 284, 392, 753
BssECI CCNNGG 6 cut(s) 411, 489, 588, 768, 924, 939
BssMI GATC 2 cut(s) 373, 668
BssT1I CCWWGG 6 cut(s) 411, 489, 588, 768, 924, 939
Bst2UI CCWGG 3 cut(s) 28, 220, 903
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 5 cut(s) 92, 339, 591, 599, 650
BstAUI TGTACA 1 cut(s) 840
BstC8I GCNNGC 4 cut(s) 216, 474, 813, 834
BstDEI CTNAG 1 cut(s) 561
BstDSI CCRYGG 4 cut(s) 411, 489, 768, 924
BstF5I GGATG 4 cut(s) 23, 409, 584, 759
BstFNI CGCG 1 cut(s) 850
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 2 cut(s) 15, 850
BstKTI GATC 2 cut(s) 376, 671
BstMAI GTCTC 4 cut(s) 82, 202, 341, 539
BstMBI GATC 2 cut(s) 373, 668
BstMWI GCNNNNNNNGC 4 cut(s) 821, 833, 898, 907
BstNI CCWGG 3 cut(s) 28, 220, 903
BstNSI RCATGY 2 cut(s) 802, 923
BstSCI CCNGG 3 cut(s) 26, 218, 901
BstSLI GKGCMC 1 cut(s) 741
BstUI CGCG 1 cut(s) 850
BstV1I GCAGC 1 cut(s) 836
BstV2I GAAGAC 4 cut(s) 47, 534, 579, 855
BstX2I RGATCY 1 cut(s) 373
BstXI CCANNNNNNTGG 1 cut(s) 34
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 4 cut(s) 283, 476, 767, 836
BtgI CCRYGG 4 cut(s) 411, 489, 768, 924
BtsCI GGATG 4 cut(s) 23, 409, 584, 759
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 1 cut(s) 891
BveI ACCTGC 1 cut(s) 724
Cac8I GCNNGC 4 cut(s) 216, 474, 813, 834
CfoI GCGC 2 cut(s) 15, 850
Cfr13I GGNCC 3 cut(s) 85, 281, 936
Csp6I GTAC 2 cut(s) 147, 841
CviAII CATG 7 cut(s) 412, 490, 769, 799, 838, 920, 925
CviQI GTAC 2 cut(s) 147, 841
DdeI CTNAG 1 cut(s) 561
DpnI GATC 2 cut(s) 375, 670
DpnII GATC 2 cut(s) 373, 668
EaeI YGGCCR 1 cut(s) 834
Eam1104I CTCTTC 5 cut(s) 92, 339, 591, 599, 650
EarI CTCTTC 5 cut(s) 92, 339, 591, 599, 650
Eco130I CCWWGG 6 cut(s) 411, 489, 588, 768, 924, 939
Eco31I GGTCTC 1 cut(s) 539
Eco32I GATATC 1 cut(s) 496
Eco47I GGWCC 2 cut(s) 85, 936
EcoRII CCWGG 3 cut(s) 26, 218, 901
EcoRV GATATC 1 cut(s) 496
EcoT14I CCWWGG 6 cut(s) 411, 489, 588, 768, 924, 939
ErhI CCWWGG 6 cut(s) 411, 489, 588, 768, 924, 939
FaeI CATG 7 cut(s) 415, 493, 772, 802, 841, 923, 928
FaqI GGGAC 1 cut(s) 949
FatI CATG 7 cut(s) 411, 489, 768, 798, 837, 919, 924
Fnu4HI GCNGC 2 cut(s) 16, 825
FokI GGATG 4 cut(s) 10, 416, 571, 766
Fsp4HI GCNGC 2 cut(s) 16, 825
FspBI CTAG 1 cut(s) 812
GlaI GCGC 2 cut(s) 14, 849
GluI GCNGC 2 cut(s) 16, 825
GsuI CTGGAG 1 cut(s) 924
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 4 cut(s) 283, 476, 767, 836
HapII CCGG 1 cut(s) 627
HhaI GCGC 2 cut(s) 15, 850
Hin1II CATG 7 cut(s) 415, 493, 772, 802, 841, 923, 928
Hin6I GCGC 2 cut(s) 13, 848
HinP1I GCGC 2 cut(s) 13, 848
HincII GTYRAC 2 cut(s) 205, 397
HindII GTYRAC 2 cut(s) 205, 397
HinfI GANTC 5 cut(s) 134, 331, 556, 856, 874
HpaII CCGG 1 cut(s) 627
HphI GGTGA 4 cut(s) 49, 129, 278, 605
Hpy166II GTNNAC 5 cut(s) 205, 269, 397, 739, 843
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 560, 805
Hpy8I GTNNAC 5 cut(s) 205, 269, 397, 739, 843
HpyAV CCTTC 3 cut(s) 317, 626, 926
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 739
HpyF10VI GCNNNNNNNGC 4 cut(s) 821, 833, 898, 907
HpyF3I CTNAG 1 cut(s) 561
Hsp92II CATG 7 cut(s) 415, 493, 772, 802, 841, 923, 928
HspAI GCGC 2 cut(s) 13, 848
Kzo9I GATC 2 cut(s) 373, 668
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 836
LweI GCATC 1 cut(s) 593
MaeI CTAG 1 cut(s) 812
MaeIII GTNAC 1 cut(s) 135
MalI GATC 2 cut(s) 375, 670
MbiI CCGCTC 1 cut(s) 18
MboI GATC 2 cut(s) 373, 668
MfeI CAATTG 2 cut(s) 150, 378
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 741
MlsI TGGCCA 1 cut(s) 836
MluCI AATT 5 cut(s) 150, 189, 378, 520, 784
MluNI TGGCCA 1 cut(s) 836
MlyI GAGTC 4 cut(s) 143, 325, 550, 850
Mox20I TGGCCA 1 cut(s) 836
MscI TGGCCA 1 cut(s) 836
Msp20I TGGCCA 1 cut(s) 836
MspI CCGG 1 cut(s) 627
MspR9I CCNGG 3 cut(s) 28, 220, 903
MunI CAATTG 2 cut(s) 150, 378
MvaI CCWGG 3 cut(s) 28, 220, 903
MvnI CGCG 1 cut(s) 850
MwoI GCNNNNNNNGC 4 cut(s) 821, 833, 898, 907
NcoI CCATGG 4 cut(s) 411, 489, 768, 924
NdeII GATC 2 cut(s) 373, 668
NheI GCTAGC 1 cut(s) 811
NlaIII CATG 7 cut(s) 415, 493, 772, 802, 841, 923, 928
NlaIV GGNNCC 2 cut(s) 6, 937
NmuCI GTSAC 1 cut(s) 135
NspI RCATGY 2 cut(s) 802, 923
PaqCI CACCTGC 1 cut(s) 724
PciI ACATGT 1 cut(s) 798
PfeI GAWTC 1 cut(s) 874
PflFI GACNNNGTC 1 cut(s) 859
PkrI GCNGC 2 cut(s) 17, 826
PleI GAGTC 4 cut(s) 142, 325, 550, 850
PpsI GAGTC 4 cut(s) 142, 325, 550, 850
PscI ACATGT 1 cut(s) 798
Psp6I CCWGG 3 cut(s) 26, 218, 901
PspGI CCWGG 3 cut(s) 26, 218, 901
PspN4I GGNNCC 2 cut(s) 6, 937
PspPI GGNCC 3 cut(s) 85, 281, 936
PsuI RGATCY 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 859
RsaI GTAC 2 cut(s) 148, 842
RsaNI GTAC 2 cut(s) 147, 841
SatI GCNGC 2 cut(s) 16, 825
Sau3AI GATC 2 cut(s) 373, 668
Sau96I GGNCC 3 cut(s) 85, 281, 936
SchI GAGTC 4 cut(s) 143, 325, 550, 850
ScrFI CCNGG 3 cut(s) 28, 220, 903
SduI GDGCHC 1 cut(s) 741
SfaNI GCATC 1 cut(s) 593
SinI GGWCC 2 cut(s) 85, 936
Sse9I AATT 5 cut(s) 150, 189, 378, 520, 784
SsiI CCGC 1 cut(s) 16
SspMI CTAG 1 cut(s) 812
StyD4I CCNGG 3 cut(s) 26, 218, 901
StyI CCWWGG 6 cut(s) 411, 489, 588, 768, 924, 939
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 3 cut(s) 159, 804, 866
TaqII GACCGA 1 cut(s) 197
TasI AATT 5 cut(s) 150, 189, 378, 520, 784
TatI WGTACW 2 cut(s) 146, 840
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 874
TscAI CASTG 1 cut(s) 891
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 1 cut(s) 824
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 3 cut(s) 138, 806, 984
TspRI CASTG 1 cut(s) 891
Tth111I GACNNNGTC 1 cut(s) 859
VneI GTGCAC 1 cut(s) 737
VpaK11BI GGWCC 2 cut(s) 85, 936
XapI RAATTY 1 cut(s) 520
XceI RCATGY 2 cut(s) 802, 923
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XspI CTAG 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.