FvH4_3g38600

Domain of unknown function (DUF4792)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001521
Physical Location & Seq
Forward (+)
32924070 .. 32927889
3820 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38600.t7

Sequence Viewer

Length: 1074 bp
ATGATTTTTGGTCCGGCTTTATTGTGCTCGTCACCTTTTGGTTCTTTGACCATTAAGGCACAGGAAATAGAGGGTACAAAACCTGGGTCAATTTTATATGGATTCTACATACCTCCTCCTCTGGATGATGAAATAGCTTGGACTGAAACACATCATACACTGGTGCCAACTACTAATCACAAGGAATGGATTTACTTTCTAAACAAAGGGTCAAGAATAGATATATATTACCATGTCAAACCTTCAAGTTCCTCGCCTTTAACACTTGTAATTGCACAAGGTAGAGAAAGCCTGGTTGAGTGGATAGAGGATCCATCATATGGTAATGCAACATTGTCTTGGAATATAATTAACGGAAGTGGTAAGATCCATCAGGTAATATCGGAGTCTTCTAGTTATTATATTGCAGTAGGGAACTTGAACCCTGAGGATGTTGAGGCAGACTTGGAATTCAACATAAAGTCCACTCTTTATAACACAAGTCAGGCATATTACAGGTGCTCCATACATAATCAGTACTGTGGCTTAGAGCTTTCCCTCTTAGGGACAACTTCTGCTGTCTTAACTTCTCCAGGTCCTAAAGAGGAAGATGACTGGTATGTCAAAGTGTCATATGGACCACGATGGCTCATCTATTTTCTTGGATCAGGTGTGATGACTGTGCTCCTGTTAATGGCCTTTCGATTTTGTAGCATTTTCCAAAATGCTGGTGAGGATAGAACAGATTTTCAAGGAAGAGAGGCATCACCTGTACGAACCCCATTGCTTTTACCCAAAGATGATGATGCTTTAAGTTGGGGTTCATCGTATGAATGTATTTCAAATGATGAAGAGGATTTTGAAGAGTTCCTTGGTGTTAGTTCCCTTGAAGGTAAGTCTATAAATGGAGGGGACGACAACAATACTCTGCGTCTTTGTGTCATTTGCTTTGATGGGCCGAGAGACTGCTTCTTTCTTCCATGTGGTCACTGTGCTACCTGTTTTACTTGTGGAACAAGGATTTCTGAAGAGGCTGGAACTTGTCCCATTTGTCGTATGAAGATGAAGAAAGTAAGGAAGATTTTTTCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

358

Amino Acids

39.8

Weight (kDa)

4.87

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APD1-4_N PF16040 121 - 190 1.7e-20 E3 ubiquitin-protein ligase APD1-4, N-terminal
APD1-4_M PF16041 215 - 317 1.3e-29 E3 ubiquitin-protein ligase APD1-4, middle domain
zf-C3HC4_3 PF13920 396 - 426 4.1e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
AasI GACNNNNNNGTC 1 cut(s) 599
AccB1I GGYRCC 1 cut(s) 163
AccB7I CCANNNNNTGG 1 cut(s) 320
AclWI GGATC 4 cut(s) 305, 318, 361, 652
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 1026
AfaI GTAC 3 cut(s) 76, 518, 753
AfiI CCNNNNNNNGG 3 cut(s) 320, 543, 673
AgsI TTSAA 7 cut(s) 246, 421, 454, 731, 822, 842, 869
AjnI CCWGG 3 cut(s) 82, 291, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 834, 866
AluBI AGCT 2 cut(s) 137, 532
AluI AGCT 2 cut(s) 137, 532
Alw21I GWGCWC 3 cut(s) 29, 503, 666
Alw26I GTCTC 1 cut(s) 936
AlwI GGATC 4 cut(s) 305, 318, 361, 652
AoxI GGCC 2 cut(s) 675, 935
ApoI RAATTY 1 cut(s) 449
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspS9I GGNCC 4 cut(s) 11, 575, 617, 935
AsuHPI GGTGA 3 cut(s) 24, 722, 738
AvaII GGWCC 3 cut(s) 11, 575, 617
AxyI CCTNAGG 1 cut(s) 426
BamHI GGATCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 3 cut(s) 29, 503, 666
BccI CCATC 4 cut(s) 322, 378, 618, 926
BciT130I CCWGG 3 cut(s) 84, 293, 573
BcoDI GTCTC 1 cut(s) 936
BfaI CTAG 1 cut(s) 393
BmcAI AGTACT 1 cut(s) 518
Bme1390I CCNGG 3 cut(s) 84, 293, 573
Bme18I GGWCC 3 cut(s) 11, 575, 617
BmgT120I GGNCC 4 cut(s) 11, 575, 617, 935
BmiI GGNNCC 2 cut(s) 165, 312
BmrFI CCNGG 3 cut(s) 84, 293, 573
BmsI GCATC 2 cut(s) 752, 775
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 83, 850
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 543, 673
Bse1I ACTGG 2 cut(s) 165, 599
Bse21I CCTNAGG 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 761
BseBI CCWGG 3 cut(s) 84, 293, 573
BseDI CCNNGG 2 cut(s) 83, 850
BseGI GGATG 2 cut(s) 130, 436
BseLI CCNNNNNNNGG 3 cut(s) 320, 543, 673
BseMI GCAATG 1 cut(s) 761
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 2 cut(s) 165, 599
BseRI GAGGAG 2 cut(s) 105, 108
BshFI GGCC 2 cut(s) 677, 937
BshNI GGYRCC 1 cut(s) 163
BsiHKAI GWGCWC 3 cut(s) 29, 503, 666
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 3 cut(s) 559, 905, 1008
BslI CCNNNNNNNGG 3 cut(s) 320, 543, 673
BsmAI GTCTC 1 cut(s) 936
BsmFI GGGAC 3 cut(s) 559, 905, 1008
BsnI GGCC 2 cut(s) 677, 937
Bsp1286I GDGCHC 3 cut(s) 29, 503, 666
Bsp143I GATC 3 cut(s) 310, 366, 644
BspANI GGCC 2 cut(s) 677, 937
BspCNI CTCAG 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 165, 312
BspPI GGATC 4 cut(s) 305, 318, 361, 652
BspT107I GGYRCC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 761
BsrI ACTGG 2 cut(s) 165, 599
BssECI CCNNGG 2 cut(s) 83, 850
BssMI GATC 3 cut(s) 310, 366, 644
BssT1I CCWWGG 1 cut(s) 850
Bst2UI CCWGG 3 cut(s) 84, 293, 573
Bst4CI ACNGT 3 cut(s) 521, 661, 971
Bst6I CTCTTC 4 cut(s) 730, 825, 837, 1002
BstDEI CTNAG 3 cut(s) 426, 526, 541
BstF5I GGATG 2 cut(s) 130, 436
BstKTI GATC 3 cut(s) 313, 369, 647
BstMAI GTCTC 1 cut(s) 936
BstMBI GATC 3 cut(s) 310, 366, 644
BstNI CCWGG 3 cut(s) 84, 293, 573
BstSCI CCNGG 3 cut(s) 82, 291, 571
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 2 cut(s) 310, 366
BstXI CCANNNNNNTGG 1 cut(s) 707
BstYI RGATCY 2 cut(s) 310, 366
Bsu36I CCTNAGG 1 cut(s) 426
BsuRI GGCC 2 cut(s) 677, 937
BtsCI GGATG 2 cut(s) 130, 436
BtsIMutI CAGTG 2 cut(s) 158, 967
Cfr13I GGNCC 4 cut(s) 11, 575, 617, 935
CseI GACGC 1 cut(s) 899
Csp6I GTAC 3 cut(s) 75, 517, 752
CviAII CATG 2 cut(s) 233, 960
CviJI RGCY 9 cut(s) 17, 137, 291, 525, 532, 628, 677, 937, 1013
CviKI_1 RGCY 9 cut(s) 17, 137, 291, 525, 532, 628, 677, 937, 1013
CviQI GTAC 3 cut(s) 75, 517, 752
DdeI CTNAG 3 cut(s) 426, 526, 541
DpnI GATC 3 cut(s) 312, 368, 646
DpnII GATC 3 cut(s) 310, 366, 644
DrdI GACNNNNNNGTC 1 cut(s) 599
DseDI GACNNNNNNGTC 1 cut(s) 599
Eam1104I CTCTTC 4 cut(s) 730, 825, 837, 1002
EarI CTCTTC 4 cut(s) 730, 825, 837, 1002
Eco130I CCWWGG 1 cut(s) 850
Eco47I GGWCC 3 cut(s) 11, 575, 617
Eco57I CTGAAG 1 cut(s) 1026
Eco81I CCTNAGG 1 cut(s) 426
EcoO109I RGGNCCY 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 449
EcoRII CCWGG 3 cut(s) 82, 291, 571
EcoT14I CCWWGG 1 cut(s) 850
ErhI CCWWGG 1 cut(s) 850
FaeI CATG 2 cut(s) 236, 963
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FaqI GGGAC 3 cut(s) 559, 905, 1008
FatI CATG 2 cut(s) 232, 959
FauNDI CATATG 2 cut(s) 319, 613
FokI GGATG 2 cut(s) 137, 443
FspBI CTAG 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 2 cut(s) 677, 937
HapII CCGG 1 cut(s) 14
HgaI GACGC 1 cut(s) 899
Hin1II CATG 2 cut(s) 236, 963
HinfI GANTC 2 cut(s) 102, 386
HpaII CCGG 1 cut(s) 14
HphI GGTGA 3 cut(s) 24, 722, 738
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 2 cut(s) 385, 1006
Hpy188III TCNNGA 2 cut(s) 122, 213
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 2 cut(s) 252, 863
HpyCH4III ACNGT 3 cut(s) 521, 661, 971
HpyCH4V TGCA 3 cut(s) 275, 329, 407
HpyF3I CTNAG 3 cut(s) 426, 526, 541
Hsp92II CATG 2 cut(s) 236, 963
Kzo9I GATC 3 cut(s) 310, 366, 644
LmnI GCTCC 2 cut(s) 506, 669
LweI GCATC 2 cut(s) 752, 775
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 30, 965
MalI GATC 3 cut(s) 312, 368, 646
MboI GATC 3 cut(s) 310, 366, 644
MflI RGATCY 2 cut(s) 310, 366
MhlI GDGCHC 3 cut(s) 29, 503, 666
MluCI AATT 4 cut(s) 90, 270, 348, 449
MlyI GAGTC 1 cut(s) 395
MseI TTAA 6 cut(s) 54, 260, 351, 563, 671, 791
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 3 cut(s) 84, 293, 573
MvaI CCWGG 3 cut(s) 84, 293, 573
NdeI CATATG 2 cut(s) 319, 613
NdeII GATC 3 cut(s) 310, 366, 644
NlaIII CATG 2 cut(s) 236, 963
NlaIV GGNNCC 2 cut(s) 165, 312
NmeAIII GCCGAG 1 cut(s) 963
NmuCI GTSAC 2 cut(s) 30, 965
PfeI GAWTC 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 320
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 575
PsiI TTATAA 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 3 cut(s) 82, 291, 571
PspGI CCWGG 3 cut(s) 82, 291, 571
PspN4I GGNNCC 2 cut(s) 165, 312
PspPI GGNCC 4 cut(s) 11, 575, 617, 935
PspPPI RGGWCCY 1 cut(s) 575
PsuI RGATCY 2 cut(s) 310, 366
RsaI GTAC 3 cut(s) 76, 518, 753
RsaNI GTAC 3 cut(s) 75, 517, 752
SaqAI TTAA 6 cut(s) 54, 260, 351, 563, 671, 791
Sau3AI GATC 3 cut(s) 310, 366, 644
Sau96I GGNCC 4 cut(s) 11, 575, 617, 935
ScaI AGTACT 1 cut(s) 518
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 3 cut(s) 84, 293, 573
SduI GDGCHC 3 cut(s) 29, 503, 666
SfaNI GCATC 2 cut(s) 752, 775
SinI GGWCC 3 cut(s) 11, 575, 617
Sse9I AATT 4 cut(s) 90, 270, 348, 449
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 3 cut(s) 82, 291, 571
StyI CCWWGG 1 cut(s) 850
TaaI ACNGT 3 cut(s) 521, 661, 971
TaqI TCGA 1 cut(s) 682
TasI AATT 4 cut(s) 90, 270, 348, 449
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 6 cut(s) 54, 260, 351, 563, 671, 791
Tru9I TTAA 6 cut(s) 54, 260, 351, 563, 671, 791
TscAI CASTG 2 cut(s) 165, 974
TseFI GTSAC 2 cut(s) 30, 965
Tsp45I GTSAC 2 cut(s) 30, 965
TspDTI ATGAA 6 cut(s) 144, 792, 825, 843, 1052, 1058
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 2 cut(s) 165, 974
Van91I CCANNNNNTGG 1 cut(s) 320
VpaK11BI GGWCC 3 cut(s) 11, 575, 617
XapI RAATTY 1 cut(s) 449
XspI CTAG 1 cut(s) 393
ZrmI AGTACT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.