Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008595.1

Orthogroup ID

OG0001521

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2165

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 887 bp

tttcctctcccagcacgtctatttttcttataattgctgaaggtaaagaaggccttgctcagtggcttgaagagccaacatatcctaatactacattgtcatggaacctcgttcatggaagtggcaagattctgcaggacatatcaacgtctgataattactatatttctgtgggtaacctgaactatgaggatgtggaggtgcaattaaacttcacggtgaatgctttgttgtatgatacaagtgaagcttattacaagtgtaccttcacagatacgtcctgcagtttgaaaatttcgtttcctagtggaaatgttggtgtgttaacatctcctggtccagatcagggtatagacaaccagtatgtaaaactgtcatatggaccaagatgggccacatatattattggtataggagcgatgactatacttatgttattggcctttaacttcttgaacaagttccgctgtaacaatgaagatggaataagagtacagcatgaggagttcagaccagaaagagccccgttgctttcatacaaagatgatgatcaatcaagttggggttcatcttatgattctgcctcgaacgatgagggggatcttgaagaacttatggcagcaggttctcttgatggaaagtcacttagagatggtgaaagtaacaatactcgtcggctttgtgcaatttgttttgatgctcctagggactgctttttcctcccatgcgggcactgtgtggcttgttttgaatgcgcaacaaggtattcttttatgctatttctatatgtcatatctaattttgaagctctatgtttatccctgcaacaagtccacatacttcttaatacagtcaatgaggccagttgcccattagtacacgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

294

Amino Acids

32.7

Weight (kDa)

4.51

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01450
fragaria_vesca	FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430
malus_domestica	MD03G1070000.v1.1 MD04G1153100.v1.1 MD11G1073800.v1.1 MD12G1166600.v1.1
prunus_persica	Prupe.6G057100_v2.0.a1 Prupe.6G057100_v2.0.a1 Prupe.6G277400_v2.0.a1 Prupe.6G277400_v2.0.a1
pyrus_communis	pycom03g05570 pycom11g06120 pycom12g15850
rosa_chinensis	RchiOBHm_Chr3g0463121 RchiOBHm_Chr5g0069661
rosa_laevigata	RLG00000024811 RLG00000036082
rosa_multiflora	Rmu_sc0000738.1_g000037 Rmu_sc0000766.1_g000040 Rmu_sc0008595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011420 Rroxscaffold_6G00416950
rosa_rugosa	Rorug03G0061500 Rorug03G0061600 Rorug03G0061700 Rorug05G0399000 Rorug05G0399100
rosa_samantha	Rh3AG119800 Rh3BG124200 Rh3CG126200 Rh3DG125200 Rh5AG455800 Rh5BG474800 Rh5CG498200 Rh5DG486300
rosa_wichuraiana	Rw3G010130 Rw5G042530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	31
Acc16I	TGCGCA	1 cut(s)	756
Acc36I	ACCTGC	1 cut(s)	613
AciI	CCGC	2 cut(s)	465, 728
AclWI	GGATC	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	738
AfaI	GTAC	3 cut(s)	264, 494, 878
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	6 cut(s)	70, 291, 456, 607, 751, 805
AjiI	CACGTC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	2 cut(s)	250, 808
AluI	AGCT	2 cut(s)	250, 808
AlwI	GGATC	1 cut(s)	608
AoxI	GGCC	4 cut(s)	51, 392, 440, 860
ApeKI	GCWGC	1 cut(s)	619
ApoI	RAATTY	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	460
AspA2I	CCTAGG	1 cut(s)	703
AspLEI	GCGC	1 cut(s)	757
AspS9I	GGNCC	3 cut(s)	337, 382, 392
AsuHPI	GGTGA	2 cut(s)	231, 667
AvaII	GGWCC	2 cut(s)	337, 382
AvrII	CCTAGG	1 cut(s)	703
BaeGI	GKGCMC	1 cut(s)	734
BaeI	ACNNNNGTAYC	2 cut(s)	246, 279
BanII	GRGCYC	1 cut(s)	525
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	4 cut(s)	383, 475, 628, 646
BciT130I	CCWGG	1 cut(s)	335
BclI	TGATCA	1 cut(s)	549
BfaI	CTAG	3 cut(s)	305, 704, 885
BfmI	CTRYAG	2 cut(s)	133, 282
BfuAI	ACCTGC	1 cut(s)	613
BisI	GCNGC	1 cut(s)	620
BlnI	CCTAGG	1 cut(s)	703
BlsI	GCNGC	1 cut(s)	621
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	337, 382
BmgBI	CACGTC	1 cut(s)	17
BmgT120I	GGNCC	3 cut(s)	337, 382, 392
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	703
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	2 cut(s)	360, 863
Bse8I	GATNNNNATC	1 cut(s)	548
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	703
BseGI	GGATG	1 cut(s)	198
BseJI	GATNNNNATC	1 cut(s)	548
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	360, 863
BseRI	GAGGAG	1 cut(s)	517
BseSI	GKGCMC	1 cut(s)	734
BseXI	GCAGC	1 cut(s)	631
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	4 cut(s)	53, 394, 442, 862
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	721
BsmI	GAATGC	2 cut(s)	228, 757
BsnI	GGCC	4 cut(s)	53, 394, 442, 862
Bsp1286I	GDGCHC	2 cut(s)	525, 734
Bsp143I	GATC	3 cut(s)	342, 549, 600
BspACI	CCGC	2 cut(s)	465, 728
BspANI	GGCC	4 cut(s)	53, 394, 442, 862
BspCNI	CTCAG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	106
BspMAI	CTGCAG	2 cut(s)	137, 286
BspMI	ACCTGC	1 cut(s)	613
BspPI	GGATC	1 cut(s)	608
BspQI	GCTCTTC	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	360, 863
BssECI	CCNNGG	1 cut(s)	703
BssMI	GATC	3 cut(s)	342, 549, 600
BssT1I	CCWWGG	1 cut(s)	703
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	4 cut(s)	219, 374, 736, 852
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	730
BstDEI	CTNAG	2 cut(s)	59, 646
BstEII	GGTNACC	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	757
BstKTI	GATC	3 cut(s)	345, 552, 603
BstMBI	GATC	3 cut(s)	342, 549, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	335
BstPI	GGTNACC	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	333
BstSFI	CTRYAG	2 cut(s)	133, 282
BstSLI	GKGCMC	1 cut(s)	734
BstV1I	GCAGC	1 cut(s)	631
BstX2I	RGATCY	1 cut(s)	600
BstYI	RGATCY	1 cut(s)	600
BsuRI	GGCC	4 cut(s)	53, 394, 442, 862
BtgZI	GCGATG	1 cut(s)	433
BtrI	CACGTC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	67, 732
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	1 cut(s)	730
CfoI	GCGC	1 cut(s)	757
Cfr13I	GGNCC	3 cut(s)	337, 382, 392
Csp6I	GTAC	3 cut(s)	263, 493, 877
CviAII	CATG	4 cut(s)	101, 115, 499, 725
CviQI	GTAC	3 cut(s)	263, 493, 877
DdeI	CTNAG	2 cut(s)	59, 646
DpnI	GATC	3 cut(s)	344, 551, 602
DpnII	GATC	3 cut(s)	342, 549, 600
DraIII	CACNNNGTG	1 cut(s)	738
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	703
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	337, 382
Eco57I	CTGAAG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	175
EcoO65I	GGTNACC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	703
FaeI	CATG	4 cut(s)	104, 118, 502, 728
FalI	AAGNNNNNCTT	8 cut(s)	38, 70, 234, 266, 250, 282, 753, 785
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	4 cut(s)	100, 114, 498, 724
FauI	CCCGC	1 cut(s)	721
FauNDI	CATATG	1 cut(s)	378
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	1 cut(s)	620
FokI	GGATG	1 cut(s)	205
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	1 cut(s)	620
FspBI	CTAG	3 cut(s)	305, 704, 885
FspI	TGCGCA	1 cut(s)	756
GlaI	GCGC	1 cut(s)	756
GluI	GCNGC	1 cut(s)	620
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	4 cut(s)	53, 394, 442, 862
HhaI	GCGC	1 cut(s)	757
Hin1II	CATG	4 cut(s)	104, 118, 502, 728
Hin6I	GCGC	1 cut(s)	755
HinP1I	GCGC	1 cut(s)	755
HincII	GTYRAC	1 cut(s)	326
HindII	GTYRAC	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	129, 577
HpaI	GTTAAC	1 cut(s)	326
HphI	GGTGA	2 cut(s)	231, 667
Hpy166II	GTNNAC	4 cut(s)	263, 326, 834, 879
Hpy188I	TCNGA	2 cut(s)	153, 511
Hpy188III	TCNNGA	4 cut(s)	340, 453, 604, 631
Hpy8I	GTNNAC	4 cut(s)	263, 326, 834, 879
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	3 cut(s)	34, 43, 276
HpyCH4III	ACNGT	4 cut(s)	219, 374, 736, 852
HpyCH4IV	ACGT	3 cut(s)	16, 148, 277
HpyCH4V	TGCA	5 cut(s)	135, 204, 284, 685, 825
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	2 cut(s)	59, 646
HpySE526I	ACGT	3 cut(s)	16, 148, 277
Hsp92II	CATG	4 cut(s)	104, 118, 502, 728
HspAI	GCGC	1 cut(s)	755
Ksp22I	TGATCA	1 cut(s)	549
KspAI	GTTAAC	1 cut(s)	326
Kzo9I	GATC	3 cut(s)	342, 549, 600
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	2 cut(s)	415, 705
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	1 cut(s)	687
MaeI	CTAG	3 cut(s)	305, 704, 885
MaeII	ACGT	3 cut(s)	16, 148, 277
MaeIII	GTNAC	4 cut(s)	175, 469, 641, 661
MalI	GATC	3 cut(s)	344, 551, 602
MboI	GATC	3 cut(s)	342, 549, 600
MboII	GAAGA	3 cut(s)	82, 490, 619
MflI	RGATCY	1 cut(s)	600
MhlI	GDGCHC	2 cut(s)	525, 734
MluCI	AATT	6 cut(s)	32, 156, 205, 293, 686, 798
MnlI	CCTC	9 cut(s)	15, 118, 183, 192, 495, 588, 594, 730, 852
MroXI	GAANNNNTTC	1 cut(s)	460
MseI	TTAA	4 cut(s)	208, 325, 446, 845
MslI	CAYNNNNRTG	2 cut(s)	99, 119
MspA1I	CMGCKG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	335
Mva1269I	GAATGC	2 cut(s)	228, 757
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	72
NdeI	CATATG	1 cut(s)	378
NdeII	GATC	3 cut(s)	342, 549, 600
NlaIII	CATG	4 cut(s)	104, 118, 502, 728
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	641
NsbI	TGCGCA	1 cut(s)	756
PceI	AGGCCT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	65
PctI	GAATGC	2 cut(s)	228, 757
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	129, 577
PkrI	GCNGC	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	333
PspEI	GGTNACC	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	3 cut(s)	337, 382, 392
PstI	CTGCAG	2 cut(s)	137, 286
PsuI	RGATCY	1 cut(s)	600
RsaI	GTAC	3 cut(s)	264, 494, 878
RsaNI	GTAC	3 cut(s)	263, 493, 877
RseI	CAYNNNNRTG	2 cut(s)	99, 119
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	4 cut(s)	208, 325, 446, 845
SatI	GCNGC	1 cut(s)	620
Sau3AI	GATC	3 cut(s)	342, 549, 600
Sau96I	GGNCC	3 cut(s)	337, 382, 392
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	2 cut(s)	525, 734
SfaNI	GCATC	1 cut(s)	687
SfcI	CTRYAG	2 cut(s)	133, 282
SinI	GGWCC	2 cut(s)	337, 382
SmiMI	CAYNNNNRTG	2 cut(s)	99, 119
Sse9I	AATT	6 cut(s)	32, 156, 205, 293, 686, 798
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	2 cut(s)	465, 728
SspMI	CTAG	3 cut(s)	305, 704, 885
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	703
TaaI	ACNGT	4 cut(s)	219, 374, 736, 852
TaiI	ACGT	3 cut(s)	19, 151, 280
TaqI	TCGA	1 cut(s)	586
TasI	AATT	6 cut(s)	32, 156, 205, 293, 686, 798
TatI	WGTACW	2 cut(s)	492, 876
TfiI	GAWTC	2 cut(s)	129, 577
Tru1I	TTAA	4 cut(s)	208, 325, 446, 845
Tru9I	TTAA	4 cut(s)	208, 325, 446, 845
TscAI	CASTG	2 cut(s)	67, 739
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	1 cut(s)	619
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	4 cut(s)	103, 491, 524, 557
TspRI	CASTG	2 cut(s)	67, 739
VpaK11BI	GGWCC	2 cut(s)	337, 382
XapI	RAATTY	1 cut(s)	293
XmaJI	CCTAGG	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	3 cut(s)	305, 704, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.