Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001521

Physical Location & Seq

Genomic Coordinates Reverse (-)

9726901 .. 9731241

Gene Structure 4341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G010130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGAAGAGCCTCAGACTTCTTCTTCTTCGTCTTCCTCCTCTGCTTCTCCATCTTCTTCTACTGATGCTGTCATCCATAGGGACACTACTACTTCCGGCGCCGGCGCCTCGTCTTCCAGCACTTCGCAGGTCCGCGAAGAGGAGGACGATCACAATCAGTACCACCACCACCACAATTTCCGGCATCCGGAGCCGCAGGTCAACGAAATCGGAACTTCTTACAGAGTCGGCTTATCGGGATTCGATGAGACCGCGTCTGTGATTAGAGATGACACGTGGTCCTGCATCATCGTCCTCCTCACCTTCTGGTTCTTTGTATCTATGACTTTGATTCTGGGAGTGTACGGGTCTGAGACCTTAGAGCTTGGCCCTAATACTTCGACTCTTCTGCAACCTAACCCCATATTTGTGCAGTCTATAAAGGTGGAAGAGCTGAATGTATCAAACCCTGGGCCTGTGCTATATGGTTTCTATAGTGTTCCACCGCTTAATACTGTGACGACTTGGTCAGAAACACACAGTGCCTCTGTTCCAGCTGATTCTCATAAGGAGTGGATATATTACCTAAATAAGGGGTCTCAAATAAGTATATCGTACAGCGTTTCCTCTCCCAGCACGTCTATTTTTCTTATAATTGCTGAAGGTAAAGAAGGCCTTGCTCAGTGGCTTGAAGAGCCAACATATCCTAATACTACATTGTCATGGAACCTCGTTCATGGAAGTGGCAAGATTCTGCAGGACATATCAACGTCTGATAATTACTATATTTCTGTGGGTAACCTGAACTATGAGGATGTGGAGGTGCAATTAAACTTCACGGTGAATGCTTTGTTGTATGATACAAGTGAAGCTTATTACAAGTGTACCTTCACAGATACGTCCTGCAGTTTGAAAATTTCGTTTCCCAGTGGAAATGTTGGTGTGTTAACATCTCCTGGTCCAGATCAGGGTATAGACAACCAGTATGTAAAACTGTCATATGGACCAAGATGGGCCACATATATTATTGGTATAGGAGCGATGACTATACTTATGTTATTGGCCTTCAACTTCTTGAACAAGTTCCGCTGTAACAATGAAGATGGAATAAGAGTACAGCATGAGGAGTTCAGACCAGAAAGAGCCCCGTTGCTTTCATACAAAGATGATGATCAATCAAGTTGGGGTTCATCTTATGATTCTGCCTCGAACGATGAGGGGGATCTTGAAGAACTTATGGCAGCAGGTTCTCTTGATGGAAAGTCACTTAGAGATGGTGAAAGTAACAATACTCGTCGGCTTTGTGCAATTTGTTTTGATGCTCCTAGGGACTGCTTTTTCCTCCCATGCGGGCACTGTGTGGCTTGTTTTGAATGCGCAACAAGGATAGCGGAAGCTGCTGCTACTTGTCCAATTTGTCGGAGGAACATAAAGAAGGTGAGGAAGATTTTTACAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

479

Amino Acids

52.9

Weight (kDa)

4.79

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APD1-4_N	PF16040	151 - 219	4.9e-25	E3 ubiquitin-protein ligase APD1-4, N-terminal
APD1-4_M	PF16041	244 - 347	1.5e-32	E3 ubiquitin-protein ligase APD1-4, middle domain
zf-C3HC4_3	PF13920	425 - 473	4.7e-14	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	427 - 467	2.4e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01450
fragaria_vesca	FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_3g38600 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430 FvH4_6g11430
malus_domestica	MD03G1070000.v1.1 MD04G1153100.v1.1 MD11G1073800.v1.1 MD12G1166600.v1.1
prunus_persica	Prupe.6G057100_v2.0.a1 Prupe.6G057100_v2.0.a1 Prupe.6G277400_v2.0.a1 Prupe.6G277400_v2.0.a1
pyrus_communis	pycom03g05570 pycom11g06120 pycom12g15850
rosa_chinensis	RchiOBHm_Chr3g0463121 RchiOBHm_Chr5g0069661
rosa_laevigata	RLG00000024811 RLG00000036082
rosa_multiflora	Rmu_sc0000738.1_g000037 Rmu_sc0000766.1_g000040 Rmu_sc0008595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011420 Rroxscaffold_6G00416950
rosa_rugosa	Rorug03G0061500 Rorug03G0061600 Rorug03G0061700 Rorug05G0399000 Rorug05G0399100
rosa_samantha	Rh3AG119800 Rh3BG124200 Rh3CG126200 Rh3DG125200 Rh5AG455800 Rh5BG474800 Rh5CG498200 Rh5DG486300
rosa_wichuraiana	Rw3G010130 Rw5G042530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AasI	GACNNNNNNGTC	1 cut(s)	505
Acc16I	TGCGCA	1 cut(s)	1357
Acc36I	ACCTGC	3 cut(s)	118, 187, 1214
AccB1I	GGYRCC	2 cut(s)	98, 104
AccII	CGCG	2 cut(s)	135, 254
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	7 cut(s)	133, 194, 252, 485, 1066, 1329, 1370
AclWI	GGATC	1 cut(s)	1209
AcsI	RAATTY	1 cut(s)	894
AcuI	CTGAAG	1 cut(s)	660
AcvI	CACGTG	1 cut(s)	276
AcyI	GRCGYC	2 cut(s)	99, 105
AdeI	CACNNNGTG	2 cut(s)	521, 1339
AfaI	GTAC	5 cut(s)	161, 344, 596, 865, 1095
AfiI	CCNNNNNNNGG	4 cut(s)	139, 187, 571, 947
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	6 cut(s)	671, 892, 1048, 1057, 1208, 1352
AhdI	GACNNNNNGTC	1 cut(s)	277
AjiI	CACGTC	1 cut(s)	618
AjnI	CCWGG	2 cut(s)	448, 934
AluBI	AGCT	5 cut(s)	364, 433, 536, 851, 1376
AluI	AGCT	5 cut(s)	364, 433, 536, 851, 1376
Alw26I	GTCTC	3 cut(s)	242, 347, 582
AlwI	GGATC	1 cut(s)	1209
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	5 cut(s)	367, 452, 652, 993, 1041
ApeKI	GCWGC	3 cut(s)	1220, 1376, 1379
ApoI	RAATTY	1 cut(s)	894
Asp700I	GAANNNNTTC	1 cut(s)	1061
AspA2I	CCTAGG	1 cut(s)	1304
AspLEI	GCGC	3 cut(s)	101, 107, 1358
AspS9I	GGNCC	7 cut(s)	130, 279, 368, 452, 938, 983, 993
AsuHPI	GGTGA	4 cut(s)	292, 832, 1268, 1429
AvaII	GGWCC	4 cut(s)	130, 279, 938, 983
AvrII	CCTAGG	1 cut(s)	1304
BaeGI	GKGCMC	1 cut(s)	1335
BaeI	ACNNNNGTAYC	2 cut(s)	847, 880
BanI	GGYRCC	2 cut(s)	98, 104
BanII	GRGCYC	1 cut(s)	1126
BbrPI	CACGTG	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	24, 105
BbvI	GCAGC	3 cut(s)	1232, 1363, 1366
BccI	CCATC	5 cut(s)	58, 984, 1076, 1229, 1247
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BciT130I	CCWGG	2 cut(s)	450, 936
BclI	TGATCA	1 cut(s)	1150
BcoDI	GTCTC	3 cut(s)	242, 347, 582
BfaI	CTAG	1 cut(s)	1305
BfmI	CTRYAG	3 cut(s)	472, 734, 883
BfoI	RGCGCY	2 cut(s)	102, 108
BfuAI	ACCTGC	3 cut(s)	118, 187, 1214
BisI	GCNGC	4 cut(s)	194, 1221, 1377, 1380
BlnI	CCTAGG	1 cut(s)	1304
BlsI	GCNGC	4 cut(s)	195, 1222, 1378, 1381
Bme1390I	CCNGG	2 cut(s)	450, 936
Bme18I	GGWCC	4 cut(s)	130, 279, 938, 983
BmeRI	GACNNNNNGTC	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	618
BmgT120I	GGNCC	7 cut(s)	130, 279, 368, 452, 938, 983, 993
BmiI	GGNNCC	4 cut(s)	100, 106, 192, 707
BmrFI	CCNGG	2 cut(s)	450, 936
BmrI	ACTGGG	1 cut(s)	900
BmsI	GCATC	4 cut(s)	55, 193, 294, 1288
BmuI	ACTGGG	1 cut(s)	900
BpiI	GAAGAC	2 cut(s)	24, 105
BsaAI	YACGTR	1 cut(s)	276
BsaBI	GATNNNNATC	2 cut(s)	153, 1149
BsaHI	GRCGYC	2 cut(s)	99, 105
BsaI	GGTCTC	3 cut(s)	242, 347, 582
BsaJI	CCNNGG	3 cut(s)	448, 449, 1304
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 187, 571, 947
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	906, 961
Bse8I	GATNNNNATC	2 cut(s)	153, 1149
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	450, 936
BseDI	CCNNGG	3 cut(s)	448, 449, 1304
BseGI	GGATG	3 cut(s)	72, 184, 799
BseJI	GATNNNNATC	2 cut(s)	153, 1149
BseLI	CCNNNNNNNGG	4 cut(s)	139, 187, 571, 947
BseMII	CTCAG	3 cut(s)	26, 342, 674
BseNI	ACTGG	2 cut(s)	906, 961
BseRI	GAGGAG	4 cut(s)	28, 155, 287, 1118
BseSI	GKGCMC	1 cut(s)	1335
BseXI	GCAGC	3 cut(s)	1232, 1363, 1366
BseYI	CCCAGC	1 cut(s)	611
BsgI	GTGCAG	1 cut(s)	431
Bsh1236I	CGCG	2 cut(s)	135, 254
BshFI	GGCC	5 cut(s)	369, 454, 654, 995, 1043
BshNI	GGYRCC	2 cut(s)	98, 104
BsiSI	CCGG	4 cut(s)	96, 102, 181, 188
BslFI	GGGAC	2 cut(s)	95, 1322
BslI	CCNNNNNNNGG	4 cut(s)	139, 187, 571, 947
BsmAI	GTCTC	3 cut(s)	242, 347, 582
BsmFI	GGGAC	2 cut(s)	95, 1322
BsmI	GAATGC	2 cut(s)	829, 1358
BsnI	GGCC	5 cut(s)	369, 454, 654, 995, 1043
Bso31I	GGTCTC	3 cut(s)	242, 347, 582
Bsp1286I	GDGCHC	2 cut(s)	1126, 1335
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	148, 943, 1150, 1201
BspACI	CCGC	7 cut(s)	133, 194, 252, 485, 1066, 1329, 1370
BspANI	GGCC	5 cut(s)	369, 454, 654, 995, 1043
BspCNI	CTCAG	3 cut(s)	25, 343, 673
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	2 cut(s)	135, 254
BspLI	GGNNCC	4 cut(s)	100, 106, 192, 707
BspMAI	CTGCAG	2 cut(s)	738, 887
BspMI	ACCTGC	3 cut(s)	118, 187, 1214
BspPI	GGATC	1 cut(s)	1209
BspQI	GCTCTTC	2 cut(s)	423, 666
BspT107I	GGYRCC	2 cut(s)	98, 104
BspTNI	GGTCTC	3 cut(s)	242, 347, 582
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	906, 961
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	3 cut(s)	448, 449, 1304
BssMI	GATC	4 cut(s)	148, 943, 1150, 1201
BssNI	GRCGYC	2 cut(s)	99, 105
BssT1I	CCWWGG	1 cut(s)	1304
Bst2UI	CCWGG	2 cut(s)	450, 936
Bst4CI	ACNGT	6 cut(s)	496, 521, 820, 975, 1337, 1435
Bst6I	CTCTTC	4 cut(s)	132, 390, 423, 666
BstACI	GRCGYC	2 cut(s)	99, 105
BstBAI	YACGTR	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	103, 1331
BstDEI	CTNAG	5 cut(s)	12, 351, 358, 660, 1247
BstEII	GGTNACC	1 cut(s)	776
BstENI	CCTNNNNNAGG	1 cut(s)	569
BstF5I	GGATG	3 cut(s)	72, 184, 799
BstFNI	CGCG	2 cut(s)	135, 254
BstH2I	RGCGCY	2 cut(s)	102, 108
BstHHI	GCGC	3 cut(s)	101, 107, 1358
BstKTI	GATC	4 cut(s)	151, 946, 1153, 1204
BstMAI	GTCTC	3 cut(s)	242, 347, 582
BstMBI	GATC	4 cut(s)	148, 943, 1150, 1201
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 673, 1376
BstNI	CCWGG	2 cut(s)	450, 936
BstPI	GGTNACC	1 cut(s)	776
BstSCI	CCNGG	2 cut(s)	448, 934
BstSFI	CTRYAG	3 cut(s)	472, 734, 883
BstSLI	GKGCMC	1 cut(s)	1335
BstUI	CGCG	2 cut(s)	135, 254
BstV1I	GCAGC	3 cut(s)	1232, 1363, 1366
BstV2I	GAAGAC	2 cut(s)	24, 105
BstX2I	RGATCY	1 cut(s)	1201
BstYI	RGATCY	1 cut(s)	1201
BsuRI	GGCC	5 cut(s)	369, 454, 654, 995, 1043
BtgZI	GCGATG	1 cut(s)	1034
BtrI	CACGTC	1 cut(s)	618
BtsCI	GGATG	3 cut(s)	72, 184, 799
BtsIMutI	CAGTG	4 cut(s)	526, 668, 913, 1333
BveI	ACCTGC	3 cut(s)	118, 187, 1214
Cac8I	GCNNGC	2 cut(s)	103, 1331
CfoI	GCGC	3 cut(s)	101, 107, 1358
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	7 cut(s)	130, 279, 368, 452, 938, 983, 993
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	5 cut(s)	160, 343, 595, 864, 1094
CviAII	CATG	4 cut(s)	702, 716, 1100, 1326
CviQI	GTAC	5 cut(s)	160, 343, 595, 864, 1094
DdeI	CTNAG	5 cut(s)	12, 351, 358, 660, 1247
DinI	GGCGCC	2 cut(s)	100, 106
DpnI	GATC	4 cut(s)	150, 945, 1152, 1203
DpnII	GATC	4 cut(s)	148, 943, 1150, 1201
DraIII	CACNNNGTG	2 cut(s)	521, 1339
DrdI	GACNNNNNNGTC	1 cut(s)	505
DriI	GACNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	505
Eam1104I	CTCTTC	4 cut(s)	132, 390, 423, 666
Eam1105I	GACNNNNNGTC	1 cut(s)	277
EarI	CTCTTC	4 cut(s)	132, 390, 423, 666
Eco130I	CCWWGG	1 cut(s)	1304
Eco147I	AGGCCT	1 cut(s)	654
Eco24I	GRGCYC	1 cut(s)	1126
Eco31I	GGTCTC	3 cut(s)	242, 347, 582
Eco47I	GGWCC	4 cut(s)	130, 279, 938, 983
Eco57I	CTGAAG	1 cut(s)	660
Eco72I	CACGTG	1 cut(s)	276
Eco91I	GGTNACC	1 cut(s)	776
EcoNI	CCTNNNNNAGG	1 cut(s)	569
EcoO65I	GGTNACC	1 cut(s)	776
EcoRII	CCWGG	2 cut(s)	448, 934
EcoT14I	CCWWGG	1 cut(s)	1304
EcoT38I	GRGCYC	1 cut(s)	1126
EgeI	GGCGCC	2 cut(s)	100, 106
EheI	GGCGCC	2 cut(s)	100, 106
ErhI	CCWWGG	1 cut(s)	1304
FaeI	CATG	4 cut(s)	705, 719, 1103, 1329
FalI	AAGNNNNNCTT	6 cut(s)	639, 671, 835, 867, 851, 883
FaqI	GGGAC	2 cut(s)	95, 1322
FatI	CATG	4 cut(s)	701, 715, 1099, 1325
FauI	CCCGC	1 cut(s)	1322
FauNDI	CATATG	1 cut(s)	979
FbaI	TGATCA	1 cut(s)	1150
Fnu4HI	GCNGC	4 cut(s)	194, 1221, 1377, 1380
FokI	GGATG	3 cut(s)	59, 171, 806
FriOI	GRGCYC	1 cut(s)	1126
Fsp4HI	GCNGC	4 cut(s)	194, 1221, 1377, 1380
FspBI	CTAG	1 cut(s)	1305
FspI	TGCGCA	1 cut(s)	1357
GlaI	GCGC	3 cut(s)	100, 106, 1357
GluI	GCNGC	4 cut(s)	194, 1221, 1377, 1380
GsaI	CCCAGC	1 cut(s)	615
HaeII	RGCGCY	2 cut(s)	102, 108
HaeIII	GGCC	5 cut(s)	369, 454, 654, 995, 1043
HapII	CCGG	4 cut(s)	96, 102, 181, 188
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	3 cut(s)	101, 107, 1358
Hin1I	GRCGYC	2 cut(s)	99, 105
Hin1II	CATG	4 cut(s)	705, 719, 1103, 1329
Hin6I	GCGC	3 cut(s)	99, 105, 1356
HinP1I	GCGC	3 cut(s)	99, 105, 1356
HincII	GTYRAC	2 cut(s)	202, 927
HindII	GTYRAC	2 cut(s)	202, 927
HindIII	AAGCTT	1 cut(s)	849
HinfI	GANTC	7 cut(s)	225, 240, 331, 382, 539, 730, 1178
HpaI	GTTAAC	1 cut(s)	927
HpaII	CCGG	4 cut(s)	96, 102, 181, 188
HphI	GGTGA	4 cut(s)	292, 832, 1268, 1429
Hpy166II	GTNNAC	4 cut(s)	202, 343, 864, 927
Hpy188I	TCNGA	7 cut(s)	15, 212, 352, 511, 754, 1112, 1401
Hpy188III	TCNNGA	6 cut(s)	188, 237, 941, 1054, 1205, 1232
Hpy8I	GTNNAC	4 cut(s)	202, 343, 864, 927
Hpy99I	CGWCG	1 cut(s)	1278
HpyAV	CCTTC	6 cut(s)	313, 635, 644, 877, 1054, 1408
HpyCH4III	ACNGT	6 cut(s)	496, 521, 820, 975, 1337, 1435
HpyCH4IV	ACGT	4 cut(s)	275, 617, 749, 878
HpyCH4V	TGCA	7 cut(s)	285, 391, 412, 736, 805, 885, 1286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 673, 1376
HpyF3I	CTNAG	5 cut(s)	12, 351, 358, 660, 1247
HpySE526I	ACGT	4 cut(s)	275, 617, 749, 878
Hsp92I	GRCGYC	2 cut(s)	99, 105
Hsp92II	CATG	4 cut(s)	705, 719, 1103, 1329
HspAI	GCGC	3 cut(s)	99, 105, 1356
KasI	GGCGCC	2 cut(s)	98, 104
Kpn2I	TCCGGA	1 cut(s)	187
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	1150
KspAI	GTTAAC	1 cut(s)	927
Kzo9I	GATC	4 cut(s)	148, 943, 1150, 1201
LguI	GCTCTTC	2 cut(s)	423, 666
LmnI	GCTCC	3 cut(s)	190, 1016, 1306
Lsp1109I	GCAGC	3 cut(s)	1232, 1363, 1366
LweI	GCATC	4 cut(s)	55, 193, 294, 1288
MaeI	CTAG	1 cut(s)	1305
MaeII	ACGT	4 cut(s)	275, 617, 749, 878
MaeIII	GTNAC	5 cut(s)	496, 776, 1070, 1242, 1262
MalI	GATC	4 cut(s)	150, 945, 1152, 1203
MboI	GATC	4 cut(s)	148, 943, 1150, 1201
MflI	RGATCY	1 cut(s)	1201
MhlI	GDGCHC	2 cut(s)	1126, 1335
MluCI	AATT	7 cut(s)	175, 633, 757, 806, 894, 1287, 1392
Mly113I	GGCGCC	2 cut(s)	99, 105
MlyI	GAGTC	2 cut(s)	234, 376
MmeI	TCCRAC	1 cut(s)	1379
MreI	CGCCGGCG	1 cut(s)	101
MroI	TCCGGA	1 cut(s)	187
MroNI	GCCGGC	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	1061
MseI	TTAA	3 cut(s)	489, 809, 926
MslI	CAYNNNNRTG	3 cut(s)	407, 700, 720
MspA1I	CMGCKG	2 cut(s)	536, 1068
MspI	CCGG	4 cut(s)	96, 102, 181, 188
MspR9I	CCNGG	2 cut(s)	450, 936
Mva1269I	GAATGC	2 cut(s)	829, 1358
MvaI	CCWGG	2 cut(s)	450, 936
MvnI	CGCG	2 cut(s)	135, 254
MwoI	GCNNNNNNNGC	3 cut(s)	190, 673, 1376
NaeI	GCCGGC	1 cut(s)	103
NarI	GGCGCC	2 cut(s)	99, 105
NdeI	CATATG	1 cut(s)	979
NdeII	GATC	4 cut(s)	148, 943, 1150, 1201
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	4 cut(s)	705, 719, 1103, 1329
NlaIV	GGNNCC	4 cut(s)	100, 106, 192, 707
NmuCI	GTSAC	2 cut(s)	496, 1242
NsbI	TGCGCA	1 cut(s)	1357
PasI	CCCWGGG	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	654
PciSI	GCTCTTC	2 cut(s)	423, 666
PctI	GAATGC	2 cut(s)	829, 1358
PdiI	GCCGGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	1061
PfeI	GAWTC	5 cut(s)	240, 331, 539, 730, 1178
PflFI	GACNNNGTC	2 cut(s)	253, 505
PkrI	GCNGC	4 cut(s)	195, 1222, 1378, 1381
PleI	GAGTC	2 cut(s)	233, 376
PluTI	GGCGCC	2 cut(s)	102, 108
PmaCI	CACGTG	1 cut(s)	276
PmlI	CACGTG	1 cut(s)	276
PpsI	GAGTC	2 cut(s)	233, 376
Ppu21I	YACGTR	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	632
Psp6I	CCWGG	2 cut(s)	448, 934
PspCI	CACGTG	1 cut(s)	276
PspEI	GGTNACC	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	2 cut(s)	448, 934
PspN4I	GGNNCC	4 cut(s)	100, 106, 192, 707
PspPI	GGNCC	7 cut(s)	130, 279, 368, 452, 938, 983, 993
PstI	CTGCAG	2 cut(s)	738, 887
PsuI	RGATCY	1 cut(s)	1201
PsyI	GACNNNGTC	2 cut(s)	253, 505
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	5 cut(s)	161, 344, 596, 865, 1095
RsaNI	GTAC	5 cut(s)	160, 343, 595, 864, 1094
RseI	CAYNNNNRTG	3 cut(s)	407, 700, 720
SapI	GCTCTTC	2 cut(s)	423, 666
SaqAI	TTAA	3 cut(s)	489, 809, 926
SatI	GCNGC	4 cut(s)	194, 1221, 1377, 1380
Sau3AI	GATC	4 cut(s)	148, 943, 1150, 1201
Sau96I	GGNCC	7 cut(s)	130, 279, 368, 452, 938, 983, 993
SchI	GAGTC	2 cut(s)	234, 376
ScrFI	CCNGG	2 cut(s)	450, 936
SduI	GDGCHC	2 cut(s)	1126, 1335
SfaNI	GCATC	4 cut(s)	55, 193, 294, 1288
SfcI	CTRYAG	3 cut(s)	472, 734, 883
SfoI	GGCGCC	2 cut(s)	100, 106
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	4 cut(s)	130, 279, 938, 983
SmiMI	CAYNNNNRTG	3 cut(s)	407, 700, 720
Sse9I	AATT	7 cut(s)	175, 633, 757, 806, 894, 1287, 1392
SseBI	AGGCCT	1 cut(s)	654
SsiI	CCGC	7 cut(s)	133, 194, 252, 485, 1066, 1329, 1370
SspDI	GGCGCC	2 cut(s)	98, 104
SspMI	CTAG	1 cut(s)	1305
StuI	AGGCCT	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	448, 934
StyI	CCWWGG	1 cut(s)	1304
TaaI	ACNGT	6 cut(s)	496, 521, 820, 975, 1337, 1435
TaiI	ACGT	4 cut(s)	278, 620, 752, 881
TaqI	TCGA	3 cut(s)	243, 380, 1187
TasI	AATT	7 cut(s)	175, 633, 757, 806, 894, 1287, 1392
TatI	WGTACW	1 cut(s)	1093
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	5 cut(s)	240, 331, 539, 730, 1178
Tru1I	TTAA	3 cut(s)	489, 809, 926
Tru9I	TTAA	3 cut(s)	489, 809, 926
TscAI	CASTG	4 cut(s)	526, 668, 913, 1340
TseFI	GTSAC	2 cut(s)	496, 1242
TseI	GCWGC	3 cut(s)	1220, 1376, 1379
Tsp45I	GTSAC	2 cut(s)	496, 1242
TspDTI	ATGAA	4 cut(s)	704, 1092, 1125, 1158
TspRI	CASTG	4 cut(s)	526, 668, 913, 1340
Tth111I	GACNNNGTC	2 cut(s)	253, 505
VpaK11BI	GGWCC	4 cut(s)	130, 279, 938, 983
XagI	CCTNNNNNAGG	1 cut(s)	569
XapI	RAATTY	1 cut(s)	894
XmaJI	CCTAGG	1 cut(s)	1304
XmnI	GAANNNNTTC	1 cut(s)	1061
XspI	CTAG	1 cut(s)	1305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.