AT5G01460

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
186654 .. 190661
4008 bp
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UTR
Exon/CDS
Intron
AT5G01460.1

Sequence Viewer

Length: 1530 bp
ATGGGAGATTTCAATCTCGCTCTCGTGATTGTTGCGATCGTAGTTTGCGTCATTGTTTTCATCTCCAGTATCTACCTCCTCGTCAACTATCAGCATCCAGATGATGCAAACCAGGCTTATTTCCCCAAATTCGTTGTTGTTTTTGGTTTATCCATTGCTATGATCTCTATTCTCATGTTACCGGCGGATGTGGCTAACCGGCATGCTTGTCGACATTCGATTTACAACGGCGCTTGTAATCTCACCTTACCTATGAAGGATCTTTGGCTTGCCGTTTACATTGTTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACCAGGACAAGGCTCTTGGGAAGAGGATAAAGAGTGCTTTGATTTGGGTGGTTACTACAGCTGTTGTTTGTGCTCTGGTTCTTGGAATTTTATACGGAGTCATTGGGAAGGTGGACTTCTCTGTAAGGCACTTGTCTTCTGCCACGACTACTTTCCCTACTTCATGGCAGTTTTCAAATAATCAACCTTGCATTGGTAACACTGCTCGTCAGTGCTCAGCATATACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCGTTGGGTCAGTGCTCTTCACGATATTTGGTGGTGTTGGTATTGCTTGCCTACCCTTGGGCCTTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGGTCACAGTATATAAAGGAAGCAACTGAACTAGGTAAAAAGGCAAGAGATCTAAAGAAAGCAGCTGATGCACTTCACCAGGAAGAACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGCAGTTGAAAAGGAGTTGCTCCAATTGGAAGAAGATGTGAACCTCTTAGAAGAGATGTATCCGCAAGGAGAGCAGGCAGAGACTGCTTGGGCCTTCACTGTCCTGGGATACTTGGCCAAGTTTGTTCTTGGAATCTTAGGATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGACGTCTGGGGTCTTCTTGGCACAGCTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTGCTGTTATTGCTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAATGGGGAGCCACTCTTATGAACTCTTTTCTCTTTAATGTCGGTCTCATTCTCCTCTGTTCTATCAGTGTGATTCAATTCTGCGCCACTGCATTTGGATATTATGCTCAAGCCACCGCCGCTCAGGAGATATTTGGCCACACTTTGCAGTCCCTTCGCGGTATTAAGTACCTCTACAAGTACAATGTGTTCCAGATCGGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATTGCCTTTGGATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

56.5

Weight (kDa)

9.05

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LMBR1 PF04791 9 - 275 1.6e-45 LMBR1-like membrane protein
LMBR1 PF04791 269 - 487 6.7e-28 LMBR1-like membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011383)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1119
AccBSI CCGCTC 2 cut(s) 1358, 1506
AccI GTMKAC 1 cut(s) 211
AccII CGCG 1 cut(s) 1395
AciI CCGC 6 cut(s) 185, 935, 1353, 1356, 1395, 1506
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 2 cut(s) 987, 1372
AcsI RAATTY 2 cut(s) 128, 426
AcyI GRCGYC 1 cut(s) 1116
AfaI GTAC 3 cut(s) 604, 1406, 1418
AfiI CCNNNNNNNGG 4 cut(s) 349, 533, 697, 1485
AgsI TTSAA 5 cut(s) 13, 516, 881, 1207, 1313
AjnI CCWGG 4 cut(s) 111, 342, 822, 975
AluBI AGCT 6 cut(s) 401, 569, 809, 1139, 1210, 1519
AluI AGCT 6 cut(s) 401, 569, 809, 1139, 1210, 1519
Alw21I GWGCWC 3 cut(s) 415, 557, 657
Alw26I GTCTC 2 cut(s) 947, 1286
AlwI GGATC 1 cut(s) 267
AlwNI CAGNNNCTG 1 cut(s) 956
AoxI GGCC 4 cut(s) 700, 963, 987, 1372
ApeKI GCWGC 3 cut(s) 575, 806, 1139
ApoI RAATTY 2 cut(s) 128, 426
AseI ATTAAT 1 cut(s) 1016
AspLEI GCGC 2 cut(s) 233, 1322
AspS9I GGNCC 3 cut(s) 594, 700, 963
AsuHPI GGTGA 2 cut(s) 235, 812
AvaII GGWCC 1 cut(s) 594
BalI TGGCCA 2 cut(s) 989, 1374
BauI CACGAG 1 cut(s) 23
BbsI GAAGAC 4 cut(s) 292, 468, 1118, 1207
Bbv12I GWGCWC 3 cut(s) 415, 557, 657
BbvI GCAGC 3 cut(s) 562, 818, 1126
BccI CCATC 1 cut(s) 1479
BceAI ACGGC 2 cut(s) 244, 257
BcgI CGANNNNNNTGC 4 cut(s) 191, 225, 1373, 1407
BciT130I CCWGG 4 cut(s) 113, 344, 824, 977
BciVI GTATCC 2 cut(s) 942, 974
BcoDI GTCTC 2 cut(s) 947, 1286
BfaI CTAG 1 cut(s) 776
BfmI CTRYAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 234
BfuI GTATCC 2 cut(s) 942, 974
BglII AGATCT 1 cut(s) 793
BisI GCNGC 5 cut(s) 576, 807, 1140, 1356, 1507
BlpI GCTNAGC 1 cut(s) 556
BlsI GCNGC 5 cut(s) 577, 808, 1141, 1357, 1508
Bme1390I CCNGG 4 cut(s) 113, 344, 824, 977
Bme18I GGWCC 1 cut(s) 594
BmgT120I GGNCC 3 cut(s) 594, 700, 963
BmiI GGNNCC 1 cut(s) 1246
BmrFI CCNGG 4 cut(s) 113, 344, 824, 977
BmsI GCATC 4 cut(s) 94, 103, 802, 1185
BpiI GAAGAC 4 cut(s) 292, 468, 1118, 1207
BpmI CTGGAG 1 cut(s) 49
Bpu10I CCTNAGC 2 cut(s) 843, 1359
Bpu1102I GCTNAGC 1 cut(s) 556
BpuEI CTTGAG 1 cut(s) 1329
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 1116
BsaI GGTCTC 1 cut(s) 1286
BsaJI CCNNGG 2 cut(s) 696, 976
Bsc4I CCNNNNNNNGG 4 cut(s) 349, 533, 697, 1485
Bse118I RCCGGY 2 cut(s) 181, 198
Bse1I ACTGG 2 cut(s) 66, 1113
Bse3DI GCAATG 3 cut(s) 153, 1197, 1473
Bse8I GATNNNNATC 1 cut(s) 12
BseBI CCWGG 4 cut(s) 113, 344, 824, 977
BseDI CCNNGG 2 cut(s) 696, 976
BseGI GGATG 6 cut(s) 94, 193, 309, 1117, 1228, 1490
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 4 cut(s) 349, 533, 697, 1485
BseMI GCAATG 3 cut(s) 153, 1197, 1473
BseMII CTCAG 2 cut(s) 570, 1373
BseNI ACTGG 2 cut(s) 66, 1113
BseRI GAGGAG 2 cut(s) 68, 1280
BseXI GCAGC 3 cut(s) 562, 818, 1126
BseYI CCCAGC 1 cut(s) 1184
Bsh1236I CGCG 1 cut(s) 1395
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 4 cut(s) 702, 965, 989, 1374
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 3 cut(s) 415, 557, 657
BsiSI CCGG 2 cut(s) 182, 199
BslFI GGGAC 1 cut(s) 1372
BslI CCNNNNNNNGG 4 cut(s) 349, 533, 697, 1485
BsmAI GTCTC 2 cut(s) 947, 1286
BsmFI GGGAC 1 cut(s) 1372
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 4 cut(s) 702, 965, 989, 1374
Bso31I GGTCTC 1 cut(s) 1286
Bsp1286I GDGCHC 3 cut(s) 415, 557, 657
Bsp143I GATC 5 cut(s) 36, 162, 259, 793, 1431
Bsp1720I GCTNAGC 1 cut(s) 556
BspACI CCGC 6 cut(s) 185, 935, 1353, 1356, 1395, 1506
BspANI GGCC 4 cut(s) 702, 965, 989, 1374
BspCNI CTCAG 2 cut(s) 569, 1372
BspFNI CGCG 1 cut(s) 1395
BspLI GGNNCC 1 cut(s) 1246
BspPI GGATC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 1286
BsrBI CCGCTC 2 cut(s) 1358, 1506
BsrDI GCAATG 3 cut(s) 153, 1197, 1473
BsrFI RCCGGY 2 cut(s) 181, 198
BsrI ACTGG 2 cut(s) 66, 1113
BssAI RCCGGY 2 cut(s) 181, 198
BssECI CCNNGG 2 cut(s) 696, 976
BssMI GATC 5 cut(s) 36, 162, 259, 793, 1431
BssNI GRCGYC 1 cut(s) 1116
BssSI CACGAG 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 696
Bst2BI CACGAG 1 cut(s) 23
Bst2UI CCWGG 4 cut(s) 113, 344, 824, 977
Bst4CI ACNGT 2 cut(s) 753, 973
Bst6I CTCTTC 3 cut(s) 356, 662, 918
BstACI GRCGYC 1 cut(s) 1116
BstAPI GCANNNNNTGC 2 cut(s) 812, 956
BstC8I GCNNGC 4 cut(s) 204, 270, 688, 948
BstDEI CTNAG 5 cut(s) 556, 843, 919, 1009, 1359
BstF5I GGATG 6 cut(s) 94, 193, 309, 1117, 1228, 1490
BstFNI CGCG 1 cut(s) 1395
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 2 cut(s) 233, 1322
BstKTI GATC 5 cut(s) 39, 165, 262, 796, 1434
BstMAI GTCTC 2 cut(s) 947, 1286
BstMBI GATC 5 cut(s) 36, 162, 259, 793, 1431
BstMCI CGRYCG 1 cut(s) 39
BstNI CCWGG 4 cut(s) 113, 344, 824, 977
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 4 cut(s) 111, 342, 822, 975
BstSFI CTRYAG 1 cut(s) 396
BstUI CGCG 1 cut(s) 1395
BstV1I GCAGC 3 cut(s) 562, 818, 1126
BstV2I GAAGAC 4 cut(s) 292, 468, 1118, 1207
BstX2I RGATCY 2 cut(s) 259, 793
BstXI CCANNNNNNTGG 1 cut(s) 1239
BstYI RGATCY 2 cut(s) 259, 793
BsuI GTATCC 2 cut(s) 942, 974
BsuRI GGCC 4 cut(s) 702, 965, 989, 1374
BtsCI GGATG 6 cut(s) 94, 193, 309, 1117, 1228, 1490
BtsI GCAGTG 3 cut(s) 540, 708, 1323
BtsIMutI CAGTG 7 cut(s) 540, 557, 657, 708, 969, 1309, 1323
Cac8I GCNNGC 4 cut(s) 204, 270, 688, 948
CaiI CAGNNNCTG 1 cut(s) 956
CfoI GCGC 2 cut(s) 233, 1322
Cfr10I RCCGGY 2 cut(s) 181, 198
Cfr13I GGNCC 3 cut(s) 594, 700, 963
CseI GACGC 3 cut(s) 37, 296, 567
Csp6I GTAC 3 cut(s) 603, 1405, 1417
CspCI CAANNNNNGTGG 2 cut(s) 1312, 1347
CviAII CATG 5 cut(s) 175, 203, 504, 591, 598
CviQI GTAC 3 cut(s) 603, 1405, 1417
DdeI CTNAG 5 cut(s) 556, 843, 919, 1009, 1359
DpnI GATC 5 cut(s) 38, 164, 261, 795, 1433
DpnII GATC 5 cut(s) 36, 162, 259, 793, 1431
EaeI YGGCCR 2 cut(s) 987, 1372
Eam1104I CTCTTC 3 cut(s) 356, 662, 918
EarI CTCTTC 3 cut(s) 356, 662, 918
EciI GGCGGA 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 696
Eco31I GGTCTC 1 cut(s) 1286
Eco47I GGWCC 1 cut(s) 594
EcoRII CCWGG 4 cut(s) 111, 342, 822, 975
EcoT14I CCWWGG 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 696
FaeI CATG 5 cut(s) 178, 206, 507, 594, 601
FalI AAGNNNNNCTT 4 cut(s) 440, 472, 1199, 1231
FaqI GGGAC 1 cut(s) 1372
FatI CATG 5 cut(s) 174, 202, 503, 590, 597
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 5 cut(s) 576, 807, 1140, 1356, 1507
FokI GGATG 6 cut(s) 81, 200, 296, 1124, 1215, 1497
Fsp4HI GCNGC 5 cut(s) 576, 807, 1140, 1356, 1507
FspBI CTAG 1 cut(s) 776
GlaI GCGC 2 cut(s) 232, 1321
GluI GCNGC 5 cut(s) 576, 807, 1140, 1356, 1507
GsaI CCCAGC 1 cut(s) 1188
GsuI CTGGAG 1 cut(s) 49
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 4 cut(s) 702, 965, 989, 1374
HapII CCGG 2 cut(s) 182, 199
HgaI GACGC 3 cut(s) 37, 296, 567
HhaI GCGC 2 cut(s) 233, 1322
Hin1I GRCGYC 1 cut(s) 1116
Hin1II CATG 5 cut(s) 178, 206, 507, 594, 601
Hin6I GCGC 2 cut(s) 231, 1320
HinP1I GCGC 2 cut(s) 231, 1320
HincII GTYRAC 4 cut(s) 85, 212, 286, 1066
HindII GTYRAC 4 cut(s) 85, 212, 286, 1066
HinfI GANTC 4 cut(s) 438, 1005, 1309, 1512
HpaII CCGG 2 cut(s) 182, 199
HphI GGTGA 2 cut(s) 235, 812
Hpy166II GTNNAC 7 cut(s) 85, 212, 277, 286, 454, 913, 1066
Hpy188I TCNGA 2 cut(s) 583, 1089
Hpy188III TCNNGA 6 cut(s) 25, 98, 614, 661, 1361, 1429
Hpy8I GTNNAC 7 cut(s) 85, 212, 277, 286, 454, 913, 1066
HpyAV CCTTC 7 cut(s) 250, 325, 329, 442, 843, 976, 1400
HpyCH4III ACNGT 2 cut(s) 753, 973
HpyCH4IV ACGT 2 cut(s) 608, 1116
HpyCH4V TGCA 6 cut(s) 107, 531, 713, 815, 1328, 1384
HpyF3I CTNAG 5 cut(s) 556, 843, 919, 1009, 1359
HpySE526I ACGT 2 cut(s) 608, 1116
Hsp92I GRCGYC 1 cut(s) 1116
Hsp92II CATG 5 cut(s) 178, 206, 507, 594, 601
HspAI GCGC 2 cut(s) 231, 1320
Kzo9I GATC 5 cut(s) 36, 162, 259, 793, 1431
LguI GCTCTTC 1 cut(s) 662
LmnI GCTCC 2 cut(s) 897, 1244
Lsp1109I GCAGC 3 cut(s) 562, 818, 1126
LweI GCATC 4 cut(s) 94, 103, 802, 1185
MaeI CTAG 1 cut(s) 776
MaeII ACGT 2 cut(s) 608, 1116
MaeIII GTNAC 4 cut(s) 177, 391, 536, 747
MalI GATC 5 cut(s) 38, 164, 261, 795, 1433
MbiI CCGCTC 2 cut(s) 1358, 1506
MboI GATC 5 cut(s) 36, 162, 259, 793, 1431
MfeI CAATTG 1 cut(s) 896
MflI RGATCY 2 cut(s) 259, 793
MhlI GDGCHC 3 cut(s) 415, 557, 657
MlsI TGGCCA 2 cut(s) 989, 1374
MluCI AATT 5 cut(s) 128, 426, 896, 1017, 1313
MluNI TGGCCA 2 cut(s) 989, 1374
MlyI GAGTC 1 cut(s) 447
Mox20I TGGCCA 2 cut(s) 989, 1374
MscI TGGCCA 2 cut(s) 989, 1374
MseI TTAA 3 cut(s) 1016, 1272, 1401
MslI CAYNNNNRTG 3 cut(s) 99, 158, 1253
Msp20I TGGCCA 2 cut(s) 989, 1374
MspA1I CMGCKG 3 cut(s) 401, 809, 1139
MspI CCGG 2 cut(s) 182, 199
MspR9I CCNGG 4 cut(s) 113, 344, 824, 977
MunI CAATTG 1 cut(s) 896
Mva1269I GAATGC 1 cut(s) 713
MvaI CCWGG 4 cut(s) 113, 344, 824, 977
MvnI CGCG 1 cut(s) 1395
NdeII GATC 5 cut(s) 36, 162, 259, 793, 1431
NlaIII CATG 5 cut(s) 178, 206, 507, 594, 601
NlaIV GGNNCC 1 cut(s) 1246
NmeAIII GCCGAG 1 cut(s) 1527
NmuCI GTSAC 1 cut(s) 747
NspI RCATGY 1 cut(s) 206
PaeI GCATGC 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 662
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 713
PfeI GAWTC 3 cut(s) 1005, 1309, 1512
PflFI GACNNNGTC 1 cut(s) 592
PkrI GCNGC 5 cut(s) 577, 808, 1141, 1357, 1508
Ple19I CGATCG 1 cut(s) 39
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PshBI ATTAAT 1 cut(s) 1016
Psp6I CCWGG 4 cut(s) 111, 342, 822, 975
PspFI CCCAGC 1 cut(s) 1184
PspGI CCWGG 4 cut(s) 111, 342, 822, 975
PspN4I GGNNCC 1 cut(s) 1246
PspPI GGNCC 3 cut(s) 594, 700, 963
PsrI GAACNNNNNNTAC 2 cut(s) 1409, 1441
PstNI CAGNNNCTG 1 cut(s) 956
PsuI RGATCY 2 cut(s) 259, 793
PsyI GACNNNGTC 1 cut(s) 592
PvuI CGATCG 1 cut(s) 39
PvuII CAGCTG 3 cut(s) 401, 809, 1139
RsaI GTAC 3 cut(s) 604, 1406, 1418
RsaNI GTAC 3 cut(s) 603, 1405, 1417
RseI CAYNNNNRTG 3 cut(s) 99, 158, 1253
SalI GTCGAC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 662
SaqAI TTAA 3 cut(s) 1016, 1272, 1401
SatI GCNGC 5 cut(s) 576, 807, 1140, 1356, 1507
Sau3AI GATC 5 cut(s) 36, 162, 259, 793, 1431
Sau96I GGNCC 3 cut(s) 594, 700, 963
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 4 cut(s) 113, 344, 824, 977
SduI GDGCHC 3 cut(s) 415, 557, 657
SfaNI GCATC 4 cut(s) 94, 103, 802, 1185
SfcI CTRYAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 594
SmiMI CAYNNNNRTG 3 cut(s) 99, 158, 1253
SmlI CTYRAG 1 cut(s) 1344
SmoI CTYRAG 1 cut(s) 1344
SphI GCATGC 1 cut(s) 206
Sse9I AATT 5 cut(s) 128, 426, 896, 1017, 1313
SsiI CCGC 6 cut(s) 185, 935, 1353, 1356, 1395, 1506
SspMI CTAG 1 cut(s) 776
StyD4I CCNGG 4 cut(s) 111, 342, 822, 975
StyI CCWWGG 1 cut(s) 696
TaaI ACNGT 2 cut(s) 753, 973
TaiI ACGT 2 cut(s) 611, 1119
TaqI TCGA 2 cut(s) 211, 218
TaqII GACCGA 2 cut(s) 735, 1268
TasI AATT 5 cut(s) 128, 426, 896, 1017, 1313
TatI WGTACW 1 cut(s) 1416
TauI GCSGC 2 cut(s) 1358, 1509
TfiI GAWTC 3 cut(s) 1005, 1309, 1512
Tru1I TTAA 3 cut(s) 1016, 1272, 1401
Tru9I TTAA 3 cut(s) 1016, 1272, 1401
TscAI CASTG 7 cut(s) 547, 557, 657, 715, 976, 1309, 1330
TseFI GTSAC 1 cut(s) 747
TseI GCWGC 3 cut(s) 575, 806, 1139
Tsp45I GTSAC 1 cut(s) 747
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 7 cut(s) 547, 557, 657, 715, 976, 1309, 1330
Tth111I GACNNNGTC 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 594
VspI ATTAAT 1 cut(s) 1016
XapI RAATTY 2 cut(s) 128, 426
XceI RCATGY 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 211
XspI CTAG 1 cut(s) 776
ZraI GACGTC 1 cut(s) 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.