Rh3BG124300

LIMR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011383
Physical Location & Seq
Forward (+)
10220745 .. 10226180
5436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG124300.1

Sequence Viewer

Length: 1128 bp
ATGGGGGATTTCAACCTCGCGCTCGTAATCGTCGCCATTATACTGGTGGTCGTTGTCTTCATCTTCAATGTCTACCTCCTCGTCAATTACCAGCACCCGGACGACAAGAACCAGGCCTACTTTCCCAAATTCGTCGTCGTTTTGGGGCTCTCCGTCGCCGCGATTTCCATTCTCATGTTACCGGCAGACGTGGCCAACCGGCAGGCCTGCCGCCACGCGATATACAATGGCGCGTGTAATCTCACTCTTCCGATGAAGGATCTCTGGCTCGCCGTCTATATCCTCGACGCCGTCCTCGTCTTCCTCGTCATTCCCTTCGCTATGTTCTACTACGAAGGCGACCAGGACAAGACTGTTGGAAAGAGAATTGGAAGCGCAATGTTGTGGGTGGGGGTAAGCGCCGTTGTGTGTGGCCTCGTTCTCGGCATCTTGTACGGGCTTGTTGGAAAGGTGGACTTTACTGTTAGGCACCTCTCTTCTTCCACAGCTGCATTTCCTAGTTCATTTTCCTATTCTAGCGGTGAACCATGTATCAGTGGCTCGAAACAGTGTGCTGCATATACTGCAAATGCTGCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGCTGTCGCTCTTATTACCATTGTTGGATCCGTACTTTTTACTATATTTGGCGGTGTTGGGATTGCTTGTCTACCTCTCAGTCTCATATTTGCATTCGTTCGGCGTCCAAAGGCTGTTATTACTCGGTCACAGTATATTAAAGAAGCAACCGAACTGGGTAAGAAAGCAAAAGAACTGAAGAAAGCAGCCGATGCACTCCATCAAGAAGAAAGAAGTGGTTCTAAGGGTAGAAAATGGCGTAAAAATGTAAAGGCAGTAGAGAAGGAGTTGCTTCAATTAGAAGAAGATGTAAAACTTCTAGAAGAGGTGTATCCTCAAGGAGAGCAGGCTGAGACTTCTTGGGCTATGACTGTTCTTGGTTACTTGGCAAAACTCGTGTTGGGAGTTTTAGGATTGATTGTTTCAGTGGCTTGGGTTGCTCATATCGTCATATATCTATTAATAAGCCCTCCACTTTCTCCCTTCTTAAATGAGGTTTTCATCAAGCTGGATGACATATGGGGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04977 map04977
Pfam Domains
Protein Families
LMBR1

Protein Analysis

375

Amino Acids

41.15

Weight (kDa)

8.38

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LMBR1 PF04791 9 - 275 4.5e-46 LMBR1-like membrane protein
LMBR1 PF04791 262 - 368 7.1e-08 LMBR1-like membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08930 AT5G01460
fragaria_vesca FvH4_6g11450 FvH4_6g11450 FvH4_6g11450
malus_domestica MD04G1152700.v1.1 MD12G1166000.v1.1
prunus_persica Prupe.6G277300_v2.0.a1
pyrus_communis pycom04g13840 pycom12g15830
rosa_chinensis RchiOBHm_Chr3g0463141
rosa_laevigata RLG00000024810
rosa_multiflora Rmu_sc0008124.1_g000007
rosa_roxburghii Rroxscaffold_6G00416940
rosa_rugosa Rorug03G0061700
rosa_samantha Rh3AG119900 Rh3BG124300 Rh3CG126300 Rh3DG125300
rosa_wichuraiana Rw3G010140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 468
AccI GTMKAC 2 cut(s) 72, 688
AccII CGCG 4 cut(s) 20, 161, 218, 233
AciI CCGC 4 cut(s) 159, 211, 519, 669
AclWI GGATC 3 cut(s) 267, 639, 652
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 815
AcyI GRCGYC 2 cut(s) 288, 721
AfaI GTAC 3 cut(s) 434, 601, 651
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 13, 67, 893
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 2 cut(s) 111, 342
AluBI AGCT 2 cut(s) 488, 1105
AluI AGCT 2 cut(s) 488, 1105
Alw26I GTCTC 2 cut(s) 704, 944
AlwI GGATC 3 cut(s) 267, 639, 652
AoxI GGCC 4 cut(s) 114, 192, 204, 412
ApeKI GCWGC 4 cut(s) 488, 554, 572, 803
ApoI RAATTY 1 cut(s) 128
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AseI ATTAAT 1 cut(s) 1058
Asp700I GAANNNNTTC 1 cut(s) 835
AspLEI GCGC 4 cut(s) 22, 233, 377, 401
AspS9I GGNCC 1 cut(s) 591
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 533
AvaII GGWCC 1 cut(s) 591
BalI TGGCCA 1 cut(s) 194
BamHI GGATCC 1 cut(s) 644
BanI GGYRCC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 150
BauI CACGAG 1 cut(s) 992
BbsI GAAGAC 2 cut(s) 49, 292
BbvI GCAGC 4 cut(s) 475, 541, 559, 815
BccI CCATC 1 cut(s) 825
BceAI ACGGC 3 cut(s) 257, 275, 386
BciT130I CCWGG 2 cut(s) 113, 344
BciVI GTATCC 1 cut(s) 939
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 704, 944
BfaI CTAG 3 cut(s) 498, 516, 917
BfoI RGCGCY 1 cut(s) 402
BfuI GTATCC 1 cut(s) 939
BisI GCNGC 6 cut(s) 159, 211, 489, 555, 573, 804
BlsI GCNGC 6 cut(s) 160, 212, 490, 556, 574, 805
Bme1390I CCNGG 3 cut(s) 98, 113, 344
Bme18I GGWCC 1 cut(s) 591
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 591
BmiI GGNNCC 2 cut(s) 470, 646
BmrFI CCNGG 3 cut(s) 98, 113, 344
BmrI ACTGGG 1 cut(s) 782
BmsI GCATC 3 cut(s) 435, 584, 799
BmuI ACTGGG 1 cut(s) 782
BpiI GAAGAC 2 cut(s) 49, 292
BpuEI CTTGAG 1 cut(s) 918
BpuMI CCSGG 1 cut(s) 98
BsaHI GRCGYC 2 cut(s) 288, 721
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse118I RCCGGY 2 cut(s) 181, 198
Bse1I ACTGG 2 cut(s) 48, 777
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 2 cut(s) 113, 344
BseGI GGATG 1 cut(s) 1114
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 709, 939
BseNI ACTGG 2 cut(s) 48, 777
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 4 cut(s) 475, 541, 559, 815
Bsh1236I CGCG 4 cut(s) 20, 161, 218, 233
BshFI GGCC 4 cut(s) 116, 194, 206, 414
BshNI GGYRCC 1 cut(s) 468
BsiSI CCGG 3 cut(s) 98, 182, 199
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 704, 944
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 4 cut(s) 116, 194, 206, 414
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 259, 644
BspACI CCGC 4 cut(s) 159, 211, 519, 669
BspANI GGCC 4 cut(s) 116, 194, 206, 414
BspCNI CTCAG 2 cut(s) 708, 940
BspFNI CGCG 4 cut(s) 20, 161, 218, 233
BspLI GGNNCC 2 cut(s) 470, 646
BspPI GGATC 3 cut(s) 267, 639, 652
BspT107I GGYRCC 1 cut(s) 468
BsrDI GCAATG 1 cut(s) 384
BsrFI RCCGGY 2 cut(s) 181, 198
BsrI ACTGG 2 cut(s) 48, 777
BssAI RCCGGY 2 cut(s) 181, 198
BssMI GATC 2 cut(s) 259, 644
BssNI GRCGYC 2 cut(s) 288, 721
BssSI CACGAG 1 cut(s) 992
Bst2BI CACGAG 1 cut(s) 992
Bst2UI CCWGG 2 cut(s) 113, 344
Bst4CI ACNGT 5 cut(s) 355, 463, 549, 750, 970
Bst6I CTCTTC 3 cut(s) 252, 481, 915
BstACI GRCGYC 2 cut(s) 288, 721
BstAPI GCANNNNNTGC 3 cut(s) 563, 572, 809
BstC8I GCNNGC 4 cut(s) 204, 208, 270, 945
BstDEI CTNAG 3 cut(s) 695, 840, 948
BstF5I GGATG 1 cut(s) 1114
BstFNI CGCG 4 cut(s) 20, 161, 218, 233
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 4 cut(s) 22, 233, 377, 401
BstKTI GATC 2 cut(s) 262, 647
BstMAI GTCTC 2 cut(s) 704, 944
BstMBI GATC 2 cut(s) 259, 644
BstMWI GCNNNNNNNGC 5 cut(s) 191, 563, 572, 809, 1034
BstNI CCWGG 2 cut(s) 113, 344
BstSCI CCNGG 3 cut(s) 96, 111, 342
BstUI CGCG 4 cut(s) 20, 161, 218, 233
BstV1I GCAGC 4 cut(s) 475, 541, 559, 815
BstV2I GAAGAC 2 cut(s) 49, 292
BstX2I RGATCY 2 cut(s) 259, 644
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 2 cut(s) 259, 644
BsuI GTATCC 1 cut(s) 939
BsuRI GGCC 4 cut(s) 116, 194, 206, 414
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 1114
BtsIMutI CAGTG 3 cut(s) 541, 554, 1029
Cac8I GCNNGC 4 cut(s) 204, 208, 270, 945
CfoI GCGC 4 cut(s) 22, 233, 377, 401
Cfr10I RCCGGY 2 cut(s) 181, 198
Cfr13I GGNCC 1 cut(s) 591
CseI GACGC 2 cut(s) 296, 710
Csp6I GTAC 3 cut(s) 433, 600, 650
CviAII CATG 4 cut(s) 175, 528, 588, 595
CviQI GTAC 3 cut(s) 433, 600, 650
DdeI CTNAG 3 cut(s) 695, 840, 948
DpnI GATC 2 cut(s) 261, 646
DpnII GATC 2 cut(s) 259, 644
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 3 cut(s) 252, 481, 915
EarI CTCTTC 3 cut(s) 252, 481, 915
Eco147I AGGCCT 2 cut(s) 116, 206
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 591
Eco57I CTGAAG 1 cut(s) 815
EcoRII CCWGG 2 cut(s) 111, 342
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 4 cut(s) 178, 531, 591, 598
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FatI CATG 4 cut(s) 174, 527, 587, 594
FauNDI CATATG 1 cut(s) 1115
FblI GTMKAC 2 cut(s) 72, 688
Fnu4HI GCNGC 6 cut(s) 159, 211, 489, 555, 573, 804
FokI GGATG 1 cut(s) 1121
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 6 cut(s) 159, 211, 489, 555, 573, 804
FspBI CTAG 3 cut(s) 498, 516, 917
GlaI GCGC 4 cut(s) 21, 232, 376, 400
GluI GCNGC 6 cut(s) 159, 211, 489, 555, 573, 804
HaeII RGCGCY 1 cut(s) 402
HaeIII GGCC 4 cut(s) 116, 194, 206, 414
HapII CCGG 3 cut(s) 98, 182, 199
HgaI GACGC 2 cut(s) 296, 710
HhaI GCGC 4 cut(s) 22, 233, 377, 401
Hin1I GRCGYC 2 cut(s) 288, 721
Hin1II CATG 4 cut(s) 178, 531, 591, 598
Hin6I GCGC 4 cut(s) 20, 231, 375, 399
HinP1I GCGC 4 cut(s) 20, 231, 375, 399
HpaII CCGG 3 cut(s) 98, 182, 199
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 4 cut(s) 73, 454, 524, 689
Hpy188I TCNGA 2 cut(s) 252, 580
Hpy188III TCNNGA 3 cut(s) 611, 821, 917
Hpy8I GTNNAC 4 cut(s) 73, 454, 524, 689
Hpy99I CGWCG 5 cut(s) 35, 137, 140, 158, 290
HpyAV CCTTC 5 cut(s) 250, 325, 329, 874, 1090
HpyCH4III ACNGT 5 cut(s) 355, 463, 549, 750, 970
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 6 cut(s) 491, 557, 566, 575, 710, 812
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 563, 572, 809, 1034
HpyF3I CTNAG 3 cut(s) 695, 840, 948
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 2 cut(s) 288, 721
Hsp92II CATG 4 cut(s) 178, 531, 591, 598
HspAI GCGC 4 cut(s) 20, 231, 375, 399
Kzo9I GATC 2 cut(s) 259, 644
Lsp1109I GCAGC 4 cut(s) 475, 541, 559, 815
LweI GCATC 3 cut(s) 435, 584, 799
MaeI CTAG 3 cut(s) 498, 516, 917
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 3 cut(s) 177, 744, 977
MalI GATC 2 cut(s) 261, 646
MboI GATC 2 cut(s) 259, 644
MflI RGATCY 2 cut(s) 259, 644
MhlI GDGCHC 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 5 cut(s) 85, 128, 366, 893, 1123
MluNI TGGCCA 1 cut(s) 194
MmeI TCCRAC 3 cut(s) 337, 424, 622
Mox20I TGGCCA 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 835
MscI TGGCCA 1 cut(s) 194
MseI TTAA 3 cut(s) 756, 1058, 1085
MslI CAYNNNNRTG 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 3 cut(s) 98, 182, 199
MspR9I CCNGG 3 cut(s) 98, 113, 344
Mva1269I GAATGC 1 cut(s) 710
MvaI CCWGG 2 cut(s) 113, 344
MvnI CGCG 4 cut(s) 20, 161, 218, 233
MwoI GCNNNNNNNGC 5 cut(s) 191, 563, 572, 809, 1034
NciI CCSGG 1 cut(s) 98
NdeI CATATG 1 cut(s) 1115
NdeII GATC 2 cut(s) 259, 644
NlaIII CATG 4 cut(s) 178, 531, 591, 598
NlaIV GGNNCC 2 cut(s) 470, 646
NmeAIII GCCGAG 1 cut(s) 402
NmuCI GTSAC 1 cut(s) 744
PceI AGGCCT 2 cut(s) 116, 206
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 303
PctI GAATGC 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 835
PflFI GACNNNGTC 1 cut(s) 290
PkrI GCNGC 6 cut(s) 160, 212, 490, 556, 574, 805
PshBI ATTAAT 1 cut(s) 1058
Psp6I CCWGG 2 cut(s) 111, 342
PspGI CCWGG 2 cut(s) 111, 342
PspN4I GGNNCC 2 cut(s) 470, 646
PspPI GGNCC 1 cut(s) 591
PsrI GAACNNNNNNTAC 2 cut(s) 101, 133
PsuI RGATCY 2 cut(s) 259, 644
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 3 cut(s) 434, 601, 651
RsaNI GTAC 3 cut(s) 433, 600, 650
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 3 cut(s) 756, 1058, 1085
SatI GCNGC 6 cut(s) 159, 211, 489, 555, 573, 804
Sau3AI GATC 2 cut(s) 259, 644
Sau96I GGNCC 1 cut(s) 591
ScrFI CCNGG 3 cut(s) 98, 113, 344
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 3 cut(s) 435, 584, 799
SinI GGWCC 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 933
SmoI CTYRAG 1 cut(s) 933
Sse9I AATT 5 cut(s) 85, 128, 366, 893, 1123
SseBI AGGCCT 2 cut(s) 116, 206
SsiI CCGC 4 cut(s) 159, 211, 519, 669
SspMI CTAG 3 cut(s) 498, 516, 917
StuI AGGCCT 2 cut(s) 116, 206
StyD4I CCNGG 3 cut(s) 96, 111, 342
TaaI ACNGT 5 cut(s) 355, 463, 549, 750, 970
TaiI ACGT 1 cut(s) 192
TaqI TCGA 2 cut(s) 285, 542
TaqII GACCGA 1 cut(s) 732
TasI AATT 5 cut(s) 85, 128, 366, 893, 1123
TauI GCSGC 2 cut(s) 161, 213
Tru1I TTAA 3 cut(s) 756, 1058, 1085
Tru9I TTAA 3 cut(s) 756, 1058, 1085
TscAI CASTG 3 cut(s) 541, 554, 1029
TseFI GTSAC 1 cut(s) 744
TseI GCWGC 4 cut(s) 488, 554, 572, 803
Tsp45I GTSAC 1 cut(s) 744
TspDTI ATGAA 4 cut(s) 49, 269, 492, 1087
TspGWI ACGGA 2 cut(s) 142, 637
TspRI CASTG 3 cut(s) 541, 554, 1029
Tth111I GACNNNGTC 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 591
VspI ATTAAT 1 cut(s) 1058
XapI RAATTY 1 cut(s) 128
XbaI TCTAGA 1 cut(s) 916
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmiI GTMKAC 2 cut(s) 72, 688
XmnI GAANNNNTTC 1 cut(s) 835
XspI CTAG 3 cut(s) 498, 516, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.