Prupe.6G277300_v2.0.a1

LIMR family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
26056982 .. 26061216
4235 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G277300.1

Sequence Viewer

Length: 1527 bp
ATGGGCGATTTCAACCTCGCGCTCGTCATCGTCGCCATTATCCTCTGCGTCATCGTCTTCGTCTTCAATGTCTACCTGCTCGTCAATTACCAGCACCCCGACGACAAGAACCAGGCCTACTTCCCCAAATTCGTCGTCGTTTTGGGGCTCTCCGTCGCCGCGATTTCCATACTGATGTTGCCGGCCGACGTGGCGAACCGTCAGGCCTGTCGCCACGCGATATACAATGGAGCGTGTAATCTCACTCTGCCAATGAAGGATATGTGGCTCGCGATCTATATCCTTGACGCCGTGCTTGTGTTCTTCATCATCCCCTTCGCTATGTTCTACTACGAAGGAGACCAGGACAAGAGTGTTGGAAAACGGATTAGAAGCGCGTTGTTGTGGGTGGTGGTGACGGCCATTGTCTGCGCGCTCGTGCTTGGCATCTTATACGGGCTAGTTGGGAAGGTGGACTTTACTGTTAGGCATCTCTCTTCTTCCACAACTTCCTTTCCTAGTTCATGGAGCTTTTCTAGCAGTCAAGAATGTATAAGTGGCTCACATCAGTGCTCTGCATATTCTGCCAGTGATTCGTCAGAGAAAACATGGACAATGCGTACTACCTTTCCAGAATATGTTGTTGCTCTTGCTACCATTGTTGGTTCTGTGCTTTTTACTATATTTGGTGGTGTTGGCATTGCTTGTCTCCCTCTAGGACTCATATTTTCATTCGTCCGGCGTCCAAAGGCTGTTATTACCCGATCACAGTATATCAAGGAAGCCACTGAACTGGGTAAGAAAGCAAAAGAATTGAAAAAAGCAGCCGATGCACTCCATCAAGAAGAAAGAAGTGGTTCCAAGGGTAGAAAATGGCGTAAAAATGTGAAGGCAGTAGAGAAGGAGTTGCTTCAATTAGAAGAAGATGTAAAACTTCTAGAAGAGGTGTATCCTCAAGGAGAGAAGGCTGAGACTACTTGGGCTATGACTGTTCTTGGGTACTTGGCGAAGCTTGTGTTGGGAATTTTAGGATTGATTGTCTCAGTGGCTTGGATTGCTCATATCGTCATCTATCTATTGATTAGCCCACCGCTTTCTCCTTTCTTGAATGAGGTTTTCATCAAGCTGGATGATATATGGGGTCTTTTGGGCACTGTTGCATTTGCGTTCTTCTGCTTCTACCTCCTCCTTGCAGTCATTGCTGGGGCCATGATGCTTGGGATGAAATTAGTTTTCATTACTATTCATCCAATGAAGTGGGGAGCTACTCTTATGAATTCATTTTTATTTAACGTGGGACTTATTCTCCTTTGCTCCATCAGTGTGATTCAGTTCTGCTCCACAGCATTTGCATACTATGCTCAAGCAACTGCAGCCCAAGAAATATTTGGTCACACATTGCAATCTCTTCGTGGAATAAGATATTTGTACAAGTACAATGTGTTTCAAATTGCATTTATTGTCCTGGCGGGTTTGACCTTCGTGTATTATGCTGCCTTTGGATGGAGAAGAAAAAAACCAAGTGGCAGGTTCCAACTTTCCTCCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

56.52

Weight (kDa)

9.09

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011383)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 84, 1497
AccI GTMKAC 1 cut(s) 72
AccII CGCG 6 cut(s) 20, 161, 218, 272, 377, 413
AciI CCGC 3 cut(s) 159, 1070, 1448
AcoI YGGCCR 2 cut(s) 183, 399
AcsI RAATTY 3 cut(s) 128, 1002, 1255
AcyI GRCGYC 2 cut(s) 288, 721
AfaI GTAC 4 cut(s) 601, 980, 1409, 1415
AfiI CCNNNNNNNGG 1 cut(s) 1482
AgsI TTSAA 6 cut(s) 13, 67, 796, 893, 1087, 1427
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 3 cut(s) 111, 342, 1443
AjuI GAANNNNNNNTTGG 2 cut(s) 980, 1012
AleI CACNNNNGTG 1 cut(s) 547
AluBI AGCT 4 cut(s) 510, 991, 1105, 1244
AluI AGCT 4 cut(s) 510, 991, 1105, 1244
Alw21I GWGCWC 1 cut(s) 554
Alw26I GTCTC 4 cut(s) 333, 692, 944, 1024
AoxI GGCC 5 cut(s) 114, 183, 204, 399, 1185
ApeKI GCWGC 3 cut(s) 803, 1352, 1472
ApoI RAATTY 3 cut(s) 128, 1002, 1255
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 1 cut(s) 835
AspLEI GCGC 4 cut(s) 22, 377, 413, 415
AspS9I GGNCC 1 cut(s) 1185
AsuHPI GGTGA 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 1133
BanII GRGCYC 1 cut(s) 150
BauI CACGAG 1 cut(s) 416
BbsI GAAGAC 2 cut(s) 49, 55
Bbv12I GWGCWC 1 cut(s) 554
BbvI GCAGC 3 cut(s) 815, 1364, 1459
BccI CCATC 3 cut(s) 825, 1304, 1476
BceAI ACGGC 2 cut(s) 275, 414
BcgI CGANNNNNNTGC 2 cut(s) 1370, 1404
BciT130I CCWGG 3 cut(s) 113, 344, 1445
BciVI GTATCC 1 cut(s) 939
BcoDI GTCTC 4 cut(s) 333, 692, 944, 1024
BfaI CTAG 5 cut(s) 440, 498, 516, 695, 917
BfmI CTRYAG 1 cut(s) 1350
BfuAI ACCTGC 2 cut(s) 84, 1497
BfuI GTATCC 1 cut(s) 939
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 4 cut(s) 159, 804, 1353, 1473
BlsI GCNGC 4 cut(s) 160, 805, 1354, 1474
Bme1390I CCNGG 3 cut(s) 113, 344, 1445
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 1185
BmiI GGNNCC 3 cut(s) 838, 1186, 1511
BmrFI CCNGG 3 cut(s) 113, 344, 1445
BmrI ACTGGG 1 cut(s) 782
BmsI GCATC 4 cut(s) 435, 478, 799, 1182
BmuI ACTGGG 1 cut(s) 782
BpiI GAAGAC 2 cut(s) 49, 55
BpuEI CTTGAG 2 cut(s) 918, 1326
BsaBI GATNNNNATC 1 cut(s) 278
BsaHI GRCGYC 2 cut(s) 288, 721
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 840
BsaXI ACNNNNNCTCC 2 cut(s) 1269, 1299
Bsc4I CCNNNNNNNGG 1 cut(s) 1482
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 567, 777
Bse3DI GCAATG 3 cut(s) 678, 1176, 1376
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 3 cut(s) 113, 344, 1445
BseDI CCNNGG 1 cut(s) 840
BseGI GGATG 5 cut(s) 309, 1114, 1206, 1225, 1487
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 1482
BseMI GCAATG 3 cut(s) 678, 1176, 1376
BseMII CTCAG 2 cut(s) 939, 1035
BseNI ACTGG 2 cut(s) 567, 777
BsePI GCGCGC 1 cut(s) 411
BseRI GAGGAG 1 cut(s) 1154
BseSI GKGCMC 1 cut(s) 1133
BseX3I CGGCCG 1 cut(s) 183
BseXI GCAGC 3 cut(s) 815, 1364, 1459
BseYI CCCAGC 1 cut(s) 1181
Bsh1236I CGCG 6 cut(s) 20, 161, 218, 272, 377, 413
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 5 cut(s) 116, 185, 206, 401, 1187
BsiEI CGRYCG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 554
BsiSI CCGG 2 cut(s) 182, 718
BslFI GGGAC 1 cut(s) 1290
BslI CCNNNNNNNGG 1 cut(s) 1482
BsmAI GTCTC 4 cut(s) 333, 692, 944, 1024
BsmFI GGGAC 1 cut(s) 1290
BsnI GGCC 5 cut(s) 116, 185, 206, 401, 1187
Bso31I GGTCTC 1 cut(s) 333
Bsp1286I GDGCHC 3 cut(s) 150, 554, 1133
Bsp1407I TGTACA 1 cut(s) 1407
Bsp143I GATC 2 cut(s) 273, 743
Bsp68I TCGCGA 1 cut(s) 272
BspACI CCGC 3 cut(s) 159, 1070, 1448
BspANI GGCC 5 cut(s) 116, 185, 206, 401, 1187
BspCNI CTCAG 2 cut(s) 940, 1034
BspFNI CGCG 6 cut(s) 20, 161, 218, 272, 377, 413
BspLI GGNNCC 3 cut(s) 838, 1186, 1511
BspMAI CTGCAG 1 cut(s) 1354
BspMI ACCTGC 2 cut(s) 84, 1497
BspTNI GGTCTC 1 cut(s) 333
BsrDI GCAATG 3 cut(s) 678, 1176, 1376
BsrFI RCCGGY 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 1407
BsrI ACTGG 2 cut(s) 567, 777
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 840
BssHII GCGCGC 1 cut(s) 411
BssMI GATC 2 cut(s) 273, 743
BssNI GRCGYC 2 cut(s) 288, 721
BssSI CACGAG 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 840
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 3 cut(s) 113, 344, 1445
Bst4CI ACNGT 5 cut(s) 200, 463, 750, 970, 1135
Bst6I CTCTTC 3 cut(s) 481, 915, 1392
BstACI GRCGYC 2 cut(s) 288, 721
BstAPI GCANNNNNTGC 4 cut(s) 563, 809, 1178, 1337
BstAUI TGTACA 1 cut(s) 1407
BstC8I GCNNGC 3 cut(s) 183, 270, 413
BstDEI CTNAG 2 cut(s) 948, 1021
BstF5I GGATG 5 cut(s) 309, 1114, 1206, 1225, 1487
BstFNI CGCG 6 cut(s) 20, 161, 218, 272, 377, 413
BstHHI GCGC 4 cut(s) 22, 377, 413, 415
BstKTI GATC 2 cut(s) 276, 746
BstMAI GTCTC 4 cut(s) 333, 692, 944, 1024
BstMBI GATC 2 cut(s) 273, 743
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 8 cut(s) 191, 516, 563, 809, 1034, 1178, 1337, 1352
BstNI CCWGG 3 cut(s) 113, 344, 1445
BstSCI CCNGG 3 cut(s) 111, 342, 1443
BstSFI CTRYAG 1 cut(s) 1350
BstSLI GKGCMC 1 cut(s) 1133
BstUI CGCG 6 cut(s) 20, 161, 218, 272, 377, 413
BstV1I GCAGC 3 cut(s) 815, 1364, 1459
BstV2I GAAGAC 2 cut(s) 49, 55
BstXI CCANNNNNNTGG 2 cut(s) 772, 1236
BstZI CGGCCG 1 cut(s) 183
BsuI GTATCC 1 cut(s) 939
BsuRI GGCC 5 cut(s) 116, 185, 206, 401, 1187
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 5 cut(s) 309, 1114, 1206, 1225, 1487
BtsIMutI CAGTG 6 cut(s) 554, 574, 765, 1029, 1131, 1306
BtuMI TCGCGA 1 cut(s) 272
BveI ACCTGC 2 cut(s) 84, 1497
Cac8I GCNNGC 3 cut(s) 183, 270, 413
CfoI GCGC 4 cut(s) 22, 377, 413, 415
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 1185
CseI GACGC 3 cut(s) 37, 296, 710
Csp6I GTAC 4 cut(s) 600, 979, 1408, 1414
CspCI CAANNNNNGTGG 2 cut(s) 1309, 1344
CviAII CATG 3 cut(s) 504, 588, 1189
CviQI GTAC 4 cut(s) 600, 979, 1408, 1414
DdeI CTNAG 2 cut(s) 948, 1021
DpnI GATC 2 cut(s) 275, 745
DpnII GATC 2 cut(s) 273, 743
EaeI YGGCCR 2 cut(s) 183, 399
EagI CGGCCG 1 cut(s) 183
Eam1104I CTCTTC 3 cut(s) 481, 915, 1392
EarI CTCTTC 3 cut(s) 481, 915, 1392
EclXI CGGCCG 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 840
Eco147I AGGCCT 2 cut(s) 116, 206
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 333
Eco52I CGGCCG 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 1255
EcoRII CCWGG 3 cut(s) 111, 342, 1443
EcoT14I CCWWGG 1 cut(s) 840
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 840
FaeI CATG 3 cut(s) 507, 591, 1192
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 1 cut(s) 1290
FatI CATG 3 cut(s) 503, 587, 1188
FauI CCCGC 1 cut(s) 1441
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 4 cut(s) 159, 804, 1353, 1473
FokI GGATG 5 cut(s) 296, 1121, 1212, 1213, 1494
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 4 cut(s) 159, 804, 1353, 1473
FspBI CTAG 5 cut(s) 440, 498, 516, 695, 917
GlaI GCGC 4 cut(s) 21, 376, 412, 414
GluI GCNGC 4 cut(s) 159, 804, 1353, 1473
GsaI CCCAGC 1 cut(s) 1185
HaeIII GGCC 5 cut(s) 116, 185, 206, 401, 1187
HapII CCGG 2 cut(s) 182, 718
HgaI GACGC 3 cut(s) 37, 296, 710
HhaI GCGC 4 cut(s) 22, 377, 413, 415
Hin1I GRCGYC 2 cut(s) 288, 721
Hin1II CATG 3 cut(s) 507, 591, 1192
Hin6I GCGC 4 cut(s) 20, 375, 411, 413
HinP1I GCGC 4 cut(s) 20, 375, 411, 413
HindIII AAGCTT 1 cut(s) 989
HinfI GANTC 3 cut(s) 572, 699, 1306
HpaII CCGG 2 cut(s) 182, 718
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 2 cut(s) 73, 454
Hpy188I TCNGA 1 cut(s) 580
Hpy188III TCNNGA 6 cut(s) 271, 524, 611, 821, 917, 1084
Hpy8I GTNNAC 2 cut(s) 73, 454
Hpy99I CGWCG 6 cut(s) 35, 104, 137, 140, 158, 191
HpyAV CCTTC 8 cut(s) 250, 325, 329, 442, 862, 874, 937, 1468
HpyCH4III ACNGT 5 cut(s) 200, 463, 750, 970, 1135
HpyCH4IV ACGT 2 cut(s) 189, 1272
HpyCH4V TGCA 8 cut(s) 557, 812, 1139, 1172, 1331, 1352, 1381, 1433
HpyF10VI GCNNNNNNNGC 8 cut(s) 191, 516, 563, 809, 1034, 1178, 1337, 1352
HpyF3I CTNAG 2 cut(s) 948, 1021
HpySE526I ACGT 2 cut(s) 189, 1272
Hsp92I GRCGYC 2 cut(s) 288, 721
Hsp92II CATG 3 cut(s) 507, 591, 1192
HspAI GCGC 4 cut(s) 20, 375, 411, 413
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 2 cut(s) 273, 743
LmnI GCTCC 5 cut(s) 230, 507, 1241, 1298, 1322
Lsp1109I GCAGC 3 cut(s) 815, 1364, 1459
LweI GCATC 4 cut(s) 435, 478, 799, 1182
MaeI CTAG 5 cut(s) 440, 498, 516, 695, 917
MaeII ACGT 2 cut(s) 189, 1272
MaeIII GTNAC 2 cut(s) 394, 1370
MalI GATC 2 cut(s) 275, 745
MboI GATC 2 cut(s) 273, 743
MhlI GDGCHC 3 cut(s) 150, 554, 1133
MluCI AATT 8 cut(s) 85, 128, 791, 893, 1002, 1205, 1255, 1428
MlyI GAGTC 1 cut(s) 693
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 8 cut(s) 26, 53, 702, 916, 942, 1084, 1172, 1175
MroNI GCCGGC 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 835
MseI TTAA 1 cut(s) 1269
MslI CAYNNNNRTG 3 cut(s) 173, 547, 1301
MspI CCGG 2 cut(s) 182, 718
MspR9I CCNGG 3 cut(s) 113, 344, 1445
MvaI CCWGG 3 cut(s) 113, 344, 1445
MvnI CGCG 6 cut(s) 20, 161, 218, 272, 377, 413
MwoI GCNNNNNNNGC 8 cut(s) 191, 516, 563, 809, 1034, 1178, 1337, 1352
NaeI GCCGGC 1 cut(s) 183
NdeII GATC 2 cut(s) 273, 743
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 3 cut(s) 507, 591, 1192
NlaIV GGNNCC 3 cut(s) 838, 1186, 1511
NmuCI GTSAC 2 cut(s) 394, 1370
NruI TCGCGA 1 cut(s) 272
OliI CACNNNNGTG 1 cut(s) 547
PauI GCGCGC 1 cut(s) 411
PceI AGGCCT 2 cut(s) 116, 206
PdiI GCCGGC 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 835
PfeI GAWTC 2 cut(s) 572, 1306
PkrI GCNGC 4 cut(s) 160, 805, 1354, 1474
PleI GAGTC 1 cut(s) 693
PpsI GAGTC 1 cut(s) 693
Psp6I CCWGG 3 cut(s) 111, 342, 1443
PspFI CCCAGC 1 cut(s) 1181
PspGI CCWGG 3 cut(s) 111, 342, 1443
PspN4I GGNNCC 3 cut(s) 838, 1186, 1511
PspPI GGNCC 1 cut(s) 1185
PsrI GAACNNNNNNTAC 2 cut(s) 101, 133
PstI CTGCAG 1 cut(s) 1354
PteI GCGCGC 1 cut(s) 411
RruI TCGCGA 1 cut(s) 272
RsaI GTAC 4 cut(s) 601, 980, 1409, 1415
RsaNI GTAC 4 cut(s) 600, 979, 1408, 1414
RseI CAYNNNNRTG 3 cut(s) 173, 547, 1301
SaqAI TTAA 1 cut(s) 1269
SatI GCNGC 4 cut(s) 159, 804, 1353, 1473
Sau3AI GATC 2 cut(s) 273, 743
Sau96I GGNCC 1 cut(s) 1185
SchI GAGTC 1 cut(s) 693
ScrFI CCNGG 3 cut(s) 113, 344, 1445
SduI GDGCHC 3 cut(s) 150, 554, 1133
SfaNI GCATC 4 cut(s) 435, 478, 799, 1182
SfcI CTRYAG 1 cut(s) 1350
SmiMI CAYNNNNRTG 3 cut(s) 173, 547, 1301
SmlI CTYRAG 2 cut(s) 933, 1341
SmoI CTYRAG 2 cut(s) 933, 1341
Sse9I AATT 8 cut(s) 85, 128, 791, 893, 1002, 1205, 1255, 1428
SseBI AGGCCT 2 cut(s) 116, 206
SsiI CCGC 3 cut(s) 159, 1070, 1448
SspI AATATT 1 cut(s) 1365
SspMI CTAG 5 cut(s) 440, 498, 516, 695, 917
StuI AGGCCT 2 cut(s) 116, 206
StyD4I CCNGG 3 cut(s) 111, 342, 1443
StyI CCWWGG 1 cut(s) 840
TaaI ACNGT 5 cut(s) 200, 463, 750, 970, 1135
TaiI ACGT 2 cut(s) 192, 1275
TasI AATT 8 cut(s) 85, 128, 791, 893, 1002, 1205, 1255, 1428
TatI WGTACW 2 cut(s) 1407, 1413
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 2 cut(s) 572, 1306
Tru1I TTAA 1 cut(s) 1269
Tru9I TTAA 1 cut(s) 1269
TscAI CASTG 6 cut(s) 554, 574, 772, 1029, 1138, 1306
TseFI GTSAC 2 cut(s) 394, 1370
TseI GCWGC 3 cut(s) 803, 1352, 1472
Tsp45I GTSAC 2 cut(s) 394, 1370
TspGWI ACGGA 2 cut(s) 142, 379
TspRI CASTG 6 cut(s) 554, 574, 772, 1029, 1138, 1306
XapI RAATTY 3 cut(s) 128, 1002, 1255
XbaI TCTAGA 1 cut(s) 916
XcmI CCANNNNNNNNNTGG 1 cut(s) 1364
XmiI GTMKAC 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 835
XspI CTAG 5 cut(s) 440, 498, 516, 695, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.