AT3G09280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016667
Physical Location & Seq
Reverse (-)
2850735 .. 2851272
538 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09280.1

Sequence Viewer

Length: 339 bp
ATGGATGCGAAACATATAGTTCTATGCTTCTTGCTAACGTACGTCTTCTCCATGGCGGCAGCCTCATCGGAAGCTGAGCCTCCGGCAACAAGGAAACTCGGCAGGCACGAATGGCCAGGAGAGGAGGCAGAAGCACCGGAGGTTTCACATTTGGAAGAGACTGTACGGCGAGGCCACCACCATTCCACGGTGGAAAGATCGGTTGCCGGAGGTGGAGTTATTCTCGGAGGCTTAGCTACAACGTTTCTTGTGGTAGTGTTTTGCTATATAAGGGCTACGAGGAAACACAAACCCAATTATGATGAAAAGGAGACTGAGACCCCTAAAGTGTTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.4

Weight (kDa)

6.37

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016667)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09280
fragaria_vesca FvH4_6g12750
malus_domestica MD12G1154500.v1.1
prunus_persica Prupe.6G264300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0464671
rosa_laevigata RLG00000024676
rosa_multiflora Rmu_sc0002031.1_g000003 Rmu_sc0030142.1_g000002
rosa_roxburghii Rroxscaffold_6G00415470
rosa_rugosa Rorug03G0073700
rosa_samantha Rh3BG136000 Rh3CG138600 Rh3DG137600
rosa_wichuraiana Rw3G011140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AclI AACGTT 1 cut(s) 242
AcoI YGGCCR 1 cut(s) 113
AfaI GTAC 2 cut(s) 41, 165
AfiI CCNNNNNNNGG 1 cut(s) 187
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 74, 236
AluI AGCT 2 cut(s) 74, 236
Alw26I GTCTC 3 cut(s) 152, 305, 311
AoxI GGCC 2 cut(s) 113, 172
ApeKI GCWGC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 115
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbsI GAAGAC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 182
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 3 cut(s) 152, 305, 311
BisI GCNGC 2 cut(s) 57, 60
BlpI GCTNAGC 2 cut(s) 75, 232
BlsI GCNGC 2 cut(s) 58, 61
Bme1390I CCNGG 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 37
BplI GAGNNNNNCTC 2 cut(s) 207, 239
Bpu1102I GCTNAGC 2 cut(s) 75, 232
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 51, 186
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 51, 186
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 2 cut(s) 66, 306
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 2 cut(s) 115, 174
BsiSI CCGG 3 cut(s) 83, 137, 207
BsiWI CGTACG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 3 cut(s) 152, 305, 311
BsnI GGCC 2 cut(s) 115, 174
Bso31I GGTCTC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 197
Bsp1720I GCTNAGC 2 cut(s) 75, 232
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 1 cut(s) 56
BspANI GGCC 2 cut(s) 115, 174
BspCNI CTCAG 2 cut(s) 67, 307
BspTNI GGTCTC 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 51, 186
BssMI GATC 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 163, 190
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 3 cut(s) 75, 232, 315
BstDSI CCRYGG 2 cut(s) 51, 186
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 200
BstMAI GTCTC 3 cut(s) 152, 305, 311
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 115, 174
BtgI CCRYGG 2 cut(s) 51, 186
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 104
Csp6I GTAC 2 cut(s) 40, 164
CviAII CATG 1 cut(s) 52
CviJI RGCY 8 cut(s) 62, 74, 79, 115, 174, 231, 236, 275
CviKI_1 RGCY 8 cut(s) 62, 74, 79, 115, 174, 231, 236, 275
CviQI GTAC 2 cut(s) 40, 164
DdeI CTNAG 3 cut(s) 75, 232, 315
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 55
FaiI YATR 7 cut(s) 15, 17, 25, 53, 267, 269, 300
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 57, 60
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 57, 60
GluI GCNGC 2 cut(s) 57, 60
HaeIII GGCC 2 cut(s) 115, 174
HapII CCGG 3 cut(s) 83, 137, 207
Hin1II CATG 1 cut(s) 55
HpaII CCGG 3 cut(s) 83, 137, 207
Hpy188I TCNGA 2 cut(s) 70, 227
HpyCH4III ACNGT 2 cut(s) 163, 190
HpyCH4IV ACGT 3 cut(s) 38, 42, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 3 cut(s) 75, 232, 315
HpySE526I ACGT 3 cut(s) 38, 42, 242
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 1 cut(s) 197
LpnPI CCDG 6 cut(s) 88, 96, 102, 129, 150, 220
Lsp1109I GCAGC 1 cut(s) 71
MaeII ACGT 3 cut(s) 38, 42, 242
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 2 cut(s) 37, 167
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 1 cut(s) 295
MluNI TGGCCA 1 cut(s) 115
MnlI CCTC 9 cut(s) 73, 90, 115, 118, 133, 164, 203, 221, 273
Mox20I TGGCCA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 115
MseI TTAA 1 cut(s) 337
Msp20I TGGCCA 1 cut(s) 115
MspI CCGG 3 cut(s) 83, 137, 207
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 51
NdeII GATC 1 cut(s) 197
NlaIII CATG 1 cut(s) 55
NmeAIII GCCGAG 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 105
Pfl23II CGTACG 1 cut(s) 39
PkrI GCNGC 2 cut(s) 58, 61
Psp1406I AACGTT 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspLI CGTACG 1 cut(s) 39
RsaI GTAC 2 cut(s) 41, 165
RsaNI GTAC 2 cut(s) 40, 164
SaqAI TTAA 1 cut(s) 337
SatI GCNGC 2 cut(s) 57, 60
Sau3AI GATC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 117
SetI ASST 7 cut(s) 41, 45, 76, 144, 214, 238, 245
Sse9I AATT 1 cut(s) 295
SsiI CCGC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 163, 190
TaiI ACGT 3 cut(s) 41, 45, 245
TasI AATT 1 cut(s) 295
TauI GCSGC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.