Rmu_sc0030142.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030142.1
OG0016667
Physical Location & Seq
Reverse (-)
3070 .. 3390
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030142.1_g000002.1.cds

Sequence Viewer

Length: 321 bp
atggcttcggctccaagtccgtacagtgcacaagcacctatgattaggaaaatgggcaagcaccagaatgcaccagctttaagcccaatcaatgagcaatctccaaaagaagcagaagcaccagagagcggagacagtgtgagtatactagagcagcagatccacctcaagaagcaccaccatgtggacaggtcagtcgccggaggcggtgtgattctcggagggcttgccaccactttcttggtggcagttttctgttacataagagccactgcaagacataaaaagccagagattggaagtccccaagttattagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.28

Weight (kDa)

9.25

Isoelectric Point (pI)

73.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016667)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09280
fragaria_vesca FvH4_6g12750
malus_domestica MD12G1154500.v1.1
prunus_persica Prupe.6G264300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0464671
rosa_laevigata RLG00000024676
rosa_multiflora Rmu_sc0002031.1_g000003 Rmu_sc0030142.1_g000002
rosa_roxburghii Rroxscaffold_6G00415470
rosa_rugosa Rorug03G0073700
rosa_samantha Rh3BG136000 Rh3CG138600 Rh3DG137600
rosa_wichuraiana Rw3G011140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AccB7I CCANNNNNTGG 2 cut(s) 184, 296
AccBSI CCGCTC 1 cut(s) 129
AccI GTMKAC 1 cut(s) 145
AciI CCGC 2 cut(s) 129, 207
AclWI GGATC 1 cut(s) 154
AdeI CACNNNGTG 1 cut(s) 184
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 3 cut(s) 128, 184, 296
AluBI AGCT 2 cut(s) 77, 318
AluI AGCT 2 cut(s) 77, 318
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 126
Alw44I GTGCAC 1 cut(s) 27
AlwI GGATC 1 cut(s) 154
ApaLI GTGCAC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 2 cut(s) 149, 319
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 152
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 195, 225
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 184, 296
BseLI CCNNNNNNNGG 3 cut(s) 128, 184, 296
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 3 cut(s) 128, 184, 296
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 159
BspACI CCGC 2 cut(s) 129, 207
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 129
BssMI GATC 1 cut(s) 159
BssNAI GTATAC 1 cut(s) 146
Bst1107I GTATAC 1 cut(s) 146
Bst4CI ACNGT 2 cut(s) 26, 137
BstC8I GCNNGC 2 cut(s) 59, 228
BstKTI GATC 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 1 cut(s) 159
BstZ17I GTATAC 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 3 cut(s) 31, 142, 270
Cac8I GCNNGC 2 cut(s) 59, 228
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 182
CviJI RGCY 8 cut(s) 5, 11, 77, 84, 226, 269, 289, 318
CviKI_1 RGCY 8 cut(s) 5, 11, 77, 84, 226, 269, 289, 318
CviQI GTAC 1 cut(s) 22
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
DraIII CACNNNGTG 1 cut(s) 184
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
FaeI CATG 1 cut(s) 185
FaiI YATR 5 cut(s) 41, 146, 183, 263, 282
FaqI GGGAC 1 cut(s) 288
FatI CATG 1 cut(s) 181
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 2 cut(s) 149, 319
GluI GCNGC 1 cut(s) 155
HapII CCGG 1 cut(s) 201
Hin1II CATG 1 cut(s) 185
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 201
Hpy166II GTNNAC 3 cut(s) 29, 146, 187
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 3 cut(s) 29, 146, 187
HpyCH4III ACNGT 2 cut(s) 26, 137
HpyCH4V TGCA 3 cut(s) 29, 71, 275
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 77, 87, 135, 175, 214, 303
Lsp1109I GCAGC 1 cut(s) 166
MaeI CTAG 2 cut(s) 149, 319
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 161
MbiI CCGCTC 1 cut(s) 129
MboI GATC 1 cut(s) 159
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 31
MnlI CCTC 3 cut(s) 176, 197, 215
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 2 cut(s) 66, 180
MspI CCGG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 73
NdeII GATC 1 cut(s) 159
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 1 cut(s) 12
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 214
PflMI CCANNNNNTGG 2 cut(s) 184, 296
PkrI GCNGC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 159
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 2 cut(s) 66, 180
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 1 cut(s) 159
SduI GDGCHC 1 cut(s) 31
SetI ASST 5 cut(s) 40, 79, 168, 194, 320
SmiMI CAYNNNNRTG 2 cut(s) 66, 180
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SsiI CCGC 2 cut(s) 129, 207
SspMI CTAG 2 cut(s) 149, 319
TaaI ACNGT 2 cut(s) 26, 137
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 3 cut(s) 31, 142, 277
TseI GCWGC 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 3 cut(s) 31, 142, 277
Van91I CCANNNNNTGG 2 cut(s) 184, 296
VneI GTGCAC 1 cut(s) 27
XcmI CCANNNNNNNNNTGG 2 cut(s) 238, 241
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 2 cut(s) 149, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.