Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005832

Physical Location & Seq

Genomic Coordinates Forward (+)

5816246 .. 5820915

Gene Structure 4670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0073700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ATGGGCGGCCACGATCTGGAAATGGAGAAAGCTCGACTGTTAAGTTTGGCTCTTAATTTTGGGTTCGATGAAGAATCGGCCAACAAGTGCTTGGATCGTATGGTTGATCTCTACGGTGAAGATGGCCTAGATTTTATTACTGTGGAGCATTGCGGTGATGAGTTTCTTTCACAACTAGCTGAATCCGTTCAAGACACTGAAGAATGGGATGATTTACAAGCAATGGAGTCTGAAGCTTGTGGAGCATTGAATAACATGTTTGGAAATGGTAATGAAGCAGGTAACGATGATAATGCTAGTGCCAAAACCAACATGCCAGAAGATTCACTTGAACGTCAAAAGTACCCAAATTTGTTGGTCCTGGATTCGAGTGACAGTGAAGACTTTGAATTAAGAACTCCATTAAGAAGAACATATGGATCCTTGTCTTCTTCATGTCCTGTTCAGAGCAATTCTGCCCTACCCCAGAATATGGAAAGATCAAGGGGTTGTGAAAGCACCATTAGTCGAGACAGAGTTCCATCAATTTCTAGTAAGAAGCAGTGTGTTCGAACAGCAAAGGATGAATTTAAGACTCTTCCTTATGAAGAACTACAGTTGCTGGATGATGCTGAGCTGGCCAATGTTGTAATATTTGGTAATAGGACCTTTCGACCATTGCAGCATCAGGCTTGTAAAGCAGCCATGGCAAAGCAAGATTGCTTTATCCTAATGCCTACTGGAGGGGGTAAAAGCTTATGTTACCAGCTTCCTGCAACCCTGAAACCAGGTGTGACAATAGTTGTCTCTCCACTGCTTTCTCTTATTCAGGATCAGATAGTAACTCTGAACCTCAAGTTTGGTATACCAGCAACTTTTTTGAATTCTCAGCAAACTGCTTCCCAAGCAGCAGCTGTACTCCAAGAGCTGAGGAAAGATAAGCCATCATGCAAGCTTCTGTATGTGACTCCTGAGAGAATTGCTGGAAGCTCATGTTTCCTTGAGGTTCTAGAATGCTTGCATTTGAAGGGGATGCTAGCAGGATTTGTTGTTGATGAAGCGCACTGCGTAAGCCAATGGGGACATGATTTTCGTCCAGATTACAAGGGATTAGGTTGTCTTAAGCAGAAATTCCGAGATGTTCCGGTGATGGCATTGACTGCTACTGCAACCCATCCAGTTCGTAAGGACATACTAAAAATTTTGAAAATTCCCCATGCTCTTGTCCTTGAAAGGAGCTTTGACAGACCCAATTTGAAATATGAAGTGATTGGTAAGGCAAAGGAAGCACTAAAGCAGCTTGGGCAACTATTGATGAGCCGTTTTCAGAACCAGTGTGGAATTATATACTGCCTCTCCAAAAGTGAATCTGTTGAGGTTTCAAAATATCTGAATGAGAAATTTAAGATTAAGACAGCGCATTACCATGCCGGGATGGCAGCTCGCCAAAGAGTTGCTGTCCAAAAGAAATGGTACACAGGAGAGATCCAAATTGTATGTGCTACAATTGCTTTTGGGATGGGAATAGACAAGCCAGATGTTCGTTTTGTTATACACAACAGTCTATCCAAATCCATTGAAAGCTACTATCAAGAATCTGGAAGGGCTGGCAGAGATGATCTTCCTTCAGCATGCATTGTCCTGTACCAGAAGAAGGATTTTAGTCGGGTTGTATGTATGTTGCGAAATGGACAAGGATTTAAAAGTCAAAGCTTCAAGGCAGCTATGGCTCAAGCTCAGAAAATGCAAGAGTATTGTGAATTAAAGGCTCAGTGTCGGAGACAAATGTTGCTCAAACACTTCGGAGAGTCTTTTGATGAAAACGCCTGCAAAAATGGATCTAATCCTTGTGATAACTGTCTCAAGACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

617

Amino Acids

68.87

Weight (kDa)

6.65

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	218 - 387	2.5e-23	DEAD/DEAH box helicase
Helicase_C	PF00271	424 - 531	3.5e-19	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	545 - 614	1.7e-14	RecQ zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37920
fragaria_vesca	FvH4_6g12760 FvH4_6g12760
malus_domestica	MD04G1138600.v1.1 MD12G1154300.v1.1
prunus_persica	Prupe.6G264200_v2.0.a1
pyrus_communis	pycom04g12680 pycom12g14670
rosa_chinensis	RchiOBHm_Chr2g0112341 RchiOBHm_Chr3g0464731 RchiOBHm_Chr4g0392921
rosa_laevigata	RLG00000024675
rosa_multiflora	Rmu_sc0002031.1_g000002 Rmu_sc0002549.1_g000019
rosa_roxburghii	Rroxscaffold_2G00085440 Rroxscaffold_6G00415450
rosa_rugosa	Rorug03G0073700
rosa_samantha	Rh2AG233000 Rh2CG237400 Rh2DG240600 Rh3BG136200 Rh3CG138800 Rh3DG137700 Rh4DG244800 Rh5DG414900 Rh6AG177700
rosa_wichuraiana	Rw0G012330 Rw3G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	269
AccB7I	CCANNNNNTGG	2 cut(s)	16, 472
AccI	GTMKAC	1 cut(s)	844
AciI	CCGC	2 cut(s)	6, 153
AclWI	GGATC	6 cut(s)	102, 414, 427, 819, 1459, 1825
AcoI	YGGCCR	3 cut(s)	7, 78, 618
AcsI	RAATTY	7 cut(s)	349, 566, 862, 1109, 1179, 1188, 1379
AcuI	CTGAAG	3 cut(s)	219, 252, 1590
AfaI	GTAC	4 cut(s)	344, 897, 1454, 1625
AfiI	CCNNNNNNNGG	4 cut(s)	16, 472, 722, 1633
AflII	CTTAAG	1 cut(s)	1100
AflIII	ACRYGT	1 cut(s)	255
AjnI	CCWGG	2 cut(s)	360, 766
Alw26I	GTCTC	4 cut(s)	504, 790, 1753, 1844
AlwI	GGATC	6 cut(s)	102, 414, 427, 819, 1459, 1825
AlwNI	CAGNNNCTG	2 cut(s)	601, 893
AoxI	GGCC	4 cut(s)	7, 78, 124, 618
ApeKI	GCWGC	7 cut(s)	661, 680, 887, 890, 1276, 1418, 1700
ApoI	RAATTY	7 cut(s)	349, 566, 862, 1109, 1179, 1188, 1379
ArsI	GACNNNNNNTTYG	2 cut(s)	1053, 1085
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	2 cut(s)	1042, 1399
AspS9I	GGNCC	2 cut(s)	358, 645
AsuC2I	CCSGG	1 cut(s)	1411
AsuHPI	GGTGA	3 cut(s)	128, 167, 1138
AsuII	TTCGAA	1 cut(s)	550
AsuNHI	GCTAGC	1 cut(s)	1015
AvaII	GGWCC	2 cut(s)	358, 645
BalI	TGGCCA	1 cut(s)	620
BamHI	GGATCC	1 cut(s)	419
BbsI	GAAGAC	2 cut(s)	387, 420
BbvCI	CCTCAGC	1 cut(s)	908
BbvI	GCAGC	7 cut(s)	673, 692, 899, 902, 1288, 1430, 1712
BccI	CCATC	7 cut(s)	116, 529, 931, 1123, 1161, 1408, 1492
BceAI	ACGGC	1 cut(s)	1284
BcgI	CGANNNNNNTGC	4 cut(s)	275, 309, 530, 564
BciT130I	CCWGG	2 cut(s)	362, 768
BcnI	CCSGG	1 cut(s)	1411
BcoDI	GTCTC	4 cut(s)	504, 790, 1753, 1844
BfaI	CTAG	7 cut(s)	128, 176, 297, 531, 989, 1016, 1852
BfmI	CTRYAG	1 cut(s)	593
BfrI	CTTAAG	1 cut(s)	1100
BfuAI	ACCTGC	1 cut(s)	269
BglI	GCCNNNNNGGC	1 cut(s)	1415
BisI	GCNGC	8 cut(s)	7, 662, 681, 888, 891, 1277, 1419, 1701
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	8 cut(s)	8, 663, 682, 889, 892, 1278, 1420, 1702
Bme1390I	CCNGG	3 cut(s)	362, 768, 1411
Bme18I	GGWCC	2 cut(s)	358, 645
BmgT120I	GGNCC	2 cut(s)	358, 645
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	3 cut(s)	362, 768, 1411
BmsI	GCATC	3 cut(s)	598, 673, 1002
BmtI	GCTAGC	1 cut(s)	1019
BpiI	GAAGAC	2 cut(s)	387, 420
BpmI	CTGGAG	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	908
Bpu1102I	GCTNAGC	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	550
BpuEI	CTTGAG	4 cut(s)	818, 1001, 1695, 1826
BpuMI	CCSGG	1 cut(s)	1411
BsaJI	CCNNGG	1 cut(s)	684
BsaWI	WCCGGW	1 cut(s)	1123
BsaXI	ACNNNNNCTCC	2 cut(s)	1319, 1349
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 472, 722, 1633
Bse1I	ACTGG	3 cut(s)	724, 1157, 1312
Bse3DI	GCAATG	3 cut(s)	148, 228, 656
BseBI	CCWGG	2 cut(s)	362, 768
BseDI	CCNNGG	1 cut(s)	684
BseGI	GGATG	7 cut(s)	214, 568, 610, 1017, 1153, 1419, 1503
BseLI	CCNNNNNNNGG	4 cut(s)	16, 472, 722, 1633
BseMI	GCAATG	3 cut(s)	148, 228, 656
BseMII	CTCAG	6 cut(s)	603, 881, 899, 942, 1730, 1763
BseNI	ACTGG	3 cut(s)	724, 1157, 1312
BseXI	GCAGC	7 cut(s)	673, 692, 899, 902, 1288, 1430, 1712
BshFI	GGCC	4 cut(s)	9, 80, 126, 620
BsiSI	CCGG	2 cut(s)	1124, 1410
BslFI	GGGAC	1 cut(s)	1074
BslI	CCNNNNNNNGG	4 cut(s)	16, 472, 722, 1633
BsmAI	GTCTC	4 cut(s)	504, 790, 1753, 1844
BsmFI	GGGAC	1 cut(s)	1074
BsmI	GAATGC	1 cut(s)	998
BsnI	GGCC	4 cut(s)	9, 80, 126, 620
Bsp119I	TTCGAA	1 cut(s)	550
Bsp143I	GATC	9 cut(s)	13, 94, 106, 419, 479, 811, 1464, 1597, 1817
Bsp1720I	GCTNAGC	1 cut(s)	612
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	2 cut(s)	6, 153
BspANI	GGCC	4 cut(s)	9, 80, 126, 620
BspCNI	CTCAG	6 cut(s)	604, 880, 900, 943, 1729, 1762
BspLI	GGNNCC	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	269
BspOI	GCTAGC	1 cut(s)	1019
BspPI	GGATC	6 cut(s)	102, 414, 427, 819, 1459, 1825
BspT104I	TTCGAA	1 cut(s)	550
BspTI	CTTAAG	1 cut(s)	1100
BsrDI	GCAATG	3 cut(s)	148, 228, 656
BsrI	ACTGG	3 cut(s)	724, 1157, 1312
BssECI	CCNNGG	1 cut(s)	684
BssMI	GATC	9 cut(s)	13, 94, 106, 419, 479, 811, 1464, 1597, 1817
BssNAI	GTATAC	1 cut(s)	845
BssT1I	CCWWGG	1 cut(s)	684
Bst1107I	GTATAC	1 cut(s)	845
Bst2UI	CCWGG	2 cut(s)	362, 768
Bst4CI	ACNGT	7 cut(s)	39, 116, 142, 377, 597, 1541, 1838
Bst6I	CTCTTC	1 cut(s)	582
BstAFI	CTTAAG	1 cut(s)	1100
BstAPI	GCANNNNNTGC	1 cut(s)	1139
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	8 cut(s)	618, 932, 998, 1017, 1423, 1588, 1612, 1807
BstDEI	CTNAG	6 cut(s)	612, 867, 908, 951, 1716, 1749
BstDSI	CCRYGG	1 cut(s)	684
BstENI	CCTNNNNNAGG	1 cut(s)	720
BstF5I	GGATG	7 cut(s)	214, 568, 610, 1017, 1153, 1419, 1503
BstHHI	GCGC	2 cut(s)	1042, 1399
BstKTI	GATC	9 cut(s)	16, 97, 109, 422, 482, 814, 1467, 1600, 1820
BstMAI	GTCTC	4 cut(s)	504, 790, 1753, 1844
BstMBI	GATC	9 cut(s)	13, 94, 106, 419, 479, 811, 1464, 1597, 1817
BstNI	CCWGG	2 cut(s)	362, 768
BstNSI	RCATGY	3 cut(s)	259, 316, 1614
BstSCI	CCNGG	3 cut(s)	360, 766, 1409
BstSFI	CTRYAG	1 cut(s)	593
BstV1I	GCAGC	7 cut(s)	673, 692, 899, 902, 1288, 1430, 1712
BstV2I	GAAGAC	2 cut(s)	387, 420
BstX2I	RGATCY	3 cut(s)	419, 1464, 1817
BstYI	RGATCY	3 cut(s)	419, 1464, 1817
BstZ17I	GTATAC	1 cut(s)	845
BsuRI	GGCC	4 cut(s)	9, 80, 126, 620
BtgI	CCRYGG	1 cut(s)	684
BtsCI	GGATG	7 cut(s)	214, 568, 610, 1017, 1153, 1419, 1503
BtsI	GCAGTG	3 cut(s)	548, 791, 1042
BtsIMutI	CAGTG	7 cut(s)	195, 382, 548, 791, 1042, 1319, 1757
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	8 cut(s)	618, 932, 998, 1017, 1423, 1588, 1612, 1807
CaiI	CAGNNNCTG	2 cut(s)	601, 893
CfoI	GCGC	2 cut(s)	1042, 1399
Cfr13I	GGNCC	2 cut(s)	358, 645
CsiI	ACCWGGT	1 cut(s)	766
Csp6I	GTAC	4 cut(s)	343, 896, 1453, 1624
CviQI	GTAC	4 cut(s)	343, 896, 1453, 1624
DdeI	CTNAG	6 cut(s)	612, 867, 908, 951, 1716, 1749
DpnI	GATC	9 cut(s)	15, 96, 108, 421, 481, 813, 1466, 1599, 1819
DpnII	GATC	9 cut(s)	13, 94, 106, 419, 479, 811, 1464, 1597, 1817
DraI	TTTAAA	1 cut(s)	1681
EaeI	YGGCCR	3 cut(s)	7, 78, 618
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco130I	CCWWGG	1 cut(s)	684
Eco47I	GGWCC	2 cut(s)	358, 645
Eco57I	CTGAAG	3 cut(s)	219, 252, 1590
EcoNI	CCTNNNNNAGG	1 cut(s)	720
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRI	GAATTC	1 cut(s)	862
EcoRII	CCWGG	2 cut(s)	360, 766
EcoT14I	CCWWGG	1 cut(s)	684
EcoT22I	ATGCAT	1 cut(s)	1616
ErhI	CCWWGG	1 cut(s)	684
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	1 cut(s)	1074
FauNDI	CATATG	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	844
Fnu4HI	GCNGC	8 cut(s)	7, 662, 681, 888, 891, 1277, 1419, 1701
FokI	GGATG	7 cut(s)	221, 575, 617, 1024, 1140, 1426, 1510
Fsp4HI	GCNGC	8 cut(s)	7, 662, 681, 888, 891, 1277, 1419, 1701
FspBI	CTAG	7 cut(s)	128, 176, 297, 531, 989, 1016, 1852
GlaI	GCGC	2 cut(s)	1041, 1398
GluI	GCNGC	8 cut(s)	7, 662, 681, 888, 891, 1277, 1419, 1701
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	4 cut(s)	9, 80, 126, 620
HapII	CCGG	2 cut(s)	1124, 1410
HhaI	GCGC	2 cut(s)	1042, 1399
Hin6I	GCGC	2 cut(s)	1040, 1397
HinP1I	GCGC	2 cut(s)	1040, 1397
HindIII	AAGCTT	4 cut(s)	234, 733, 932, 1690
HpaII	CCGG	2 cut(s)	1124, 1410
HphI	GGTGA	3 cut(s)	128, 167, 1138
Hpy166II	GTNNAC	2 cut(s)	845, 1455
Hpy8I	GTNNAC	2 cut(s)	845, 1455
HpyAV	CCTTC	4 cut(s)	1000, 1575, 1614, 1627
HpyCH4III	ACNGT	7 cut(s)	39, 116, 142, 377, 597, 1541, 1838
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	8 cut(s)	661, 755, 930, 1000, 1148, 1614, 1726, 1809
HpyF3I	CTNAG	6 cut(s)	612, 867, 908, 951, 1716, 1749
HpySE526I	ACGT	1 cut(s)	334
HspAI	GCGC	2 cut(s)	1040, 1397
Kzo9I	GATC	9 cut(s)	13, 94, 106, 419, 479, 811, 1464, 1597, 1817
LmnI	GCTCC	3 cut(s)	145, 242, 1215
Lsp1109I	GCAGC	7 cut(s)	673, 692, 899, 902, 1288, 1430, 1712
LweI	GCATC	3 cut(s)	598, 673, 1002
MabI	ACCWGGT	1 cut(s)	766
MaeI	CTAG	7 cut(s)	128, 176, 297, 531, 989, 1016, 1852
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	6 cut(s)	281, 371, 740, 772, 820, 943
MalI	GATC	9 cut(s)	15, 96, 108, 421, 481, 813, 1466, 1599, 1819
MboI	GATC	9 cut(s)	13, 94, 106, 419, 479, 811, 1464, 1597, 1817
MfeI	CAATTG	1 cut(s)	1485
MflI	RGATCY	3 cut(s)	419, 1464, 1817
MlsI	TGGCCA	1 cut(s)	620
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	4 cut(s)	236, 568, 940, 1796
MmeI	TCCRAC	1 cut(s)	1736
MnlI	CCTC	6 cut(s)	716, 842, 903, 976, 1343, 1348
Mox20I	TGGCCA	1 cut(s)	620
Mph1103I	ATGCAT	1 cut(s)	1616
MroXI	GAANNNNTTC	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	620
MslI	CAYNNNNRTG	2 cut(s)	153, 1404
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	893
MspCI	CTTAAG	1 cut(s)	1100
MspI	CCGG	2 cut(s)	1124, 1410
MspR9I	CCNGG	3 cut(s)	362, 768, 1411
MunI	CAATTG	1 cut(s)	1485
Mva1269I	GAATGC	1 cut(s)	998
MvaI	CCWGG	2 cut(s)	362, 768
NciI	CCSGG	1 cut(s)	1411
NcoI	CCATGG	1 cut(s)	684
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	9 cut(s)	13, 94, 106, 419, 479, 811, 1464, 1597, 1817
NheI	GCTAGC	1 cut(s)	1015
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	3 cut(s)	371, 772, 943
NsiI	ATGCAT	1 cut(s)	1616
NspI	RCATGY	3 cut(s)	259, 316, 1614
NspV	TTCGAA	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	1614
PciI	ACATGT	1 cut(s)	255
PctI	GAATGC	1 cut(s)	998
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	6 cut(s)	74, 182, 323, 365, 1346, 1574
PflMI	CCANNNNNTGG	2 cut(s)	16, 472
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	8 cut(s)	8, 663, 682, 889, 892, 1278, 1420, 1702
PleI	GAGTC	4 cut(s)	235, 568, 940, 1795
PpsI	GAGTC	4 cut(s)	235, 568, 940, 1795
PpuMI	RGGWCCY	1 cut(s)	645
PscI	ACATGT	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	645
Psp6I	CCWGG	2 cut(s)	360, 766
PspGI	CCWGG	2 cut(s)	360, 766
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	2 cut(s)	358, 645
PspPPI	RGGWCCY	1 cut(s)	645
PstNI	CAGNNNCTG	2 cut(s)	601, 893
PsuI	RGATCY	3 cut(s)	419, 1464, 1817
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	4 cut(s)	344, 897, 1454, 1625
RsaNI	GTAC	4 cut(s)	343, 896, 1453, 1624
RseI	CAYNNNNRTG	2 cut(s)	153, 1404
SatI	GCNGC	8 cut(s)	7, 662, 681, 888, 891, 1277, 1419, 1701
Sau3AI	GATC	9 cut(s)	13, 94, 106, 419, 479, 811, 1464, 1597, 1817
Sau96I	GGNCC	2 cut(s)	358, 645
SchI	GAGTC	4 cut(s)	236, 568, 940, 1796
ScrFI	CCNGG	3 cut(s)	362, 768, 1411
SexAI	ACCWGGT	1 cut(s)	766
SfaNI	GCATC	3 cut(s)	598, 673, 1002
SfcI	CTRYAG	1 cut(s)	593
SfuI	TTCGAA	1 cut(s)	550
SinI	GGWCC	2 cut(s)	358, 645
SmiMI	CAYNNNNRTG	2 cut(s)	153, 1404
SmlI	CTYRAG	5 cut(s)	833, 980, 1100, 1710, 1841
SmoI	CTYRAG	5 cut(s)	833, 980, 1100, 1710, 1841
SphI	GCATGC	1 cut(s)	1614
SsiI	CCGC	2 cut(s)	6, 153
SspI	AATATT	1 cut(s)	633
SspMI	CTAG	7 cut(s)	128, 176, 297, 531, 989, 1016, 1852
StyD4I	CCNGG	3 cut(s)	360, 766, 1409
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	7 cut(s)	39, 116, 142, 377, 597, 1541, 1838
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	6 cut(s)	34, 66, 368, 508, 550, 652
TatI	WGTACW	1 cut(s)	895
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	6 cut(s)	74, 182, 323, 365, 1346, 1574
TscAI	CASTG	7 cut(s)	202, 382, 548, 798, 1049, 1319, 1757
TseFI	GTSAC	3 cut(s)	371, 772, 943
TseI	GCWGC	7 cut(s)	661, 680, 887, 890, 1276, 1418, 1700
Tsp45I	GTSAC	3 cut(s)	371, 772, 943
TspDTI	ATGAA	8 cut(s)	84, 288, 423, 579, 600, 1050, 1257, 1812
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	7 cut(s)	202, 382, 548, 798, 1049, 1319, 1757
Van91I	CCANNNNNTGG	2 cut(s)	16, 472
Vha464I	CTTAAG	1 cut(s)	1100
VpaK11BI	GGWCC	2 cut(s)	358, 645
XagI	CCTNNNNNAGG	1 cut(s)	720
XapI	RAATTY	7 cut(s)	349, 566, 862, 1109, 1179, 1188, 1379
XbaI	TCTAGA	1 cut(s)	988
XceI	RCATGY	3 cut(s)	259, 316, 1614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	7 cut(s)	128, 176, 297, 531, 989, 1016, 1852
Zsp2I	ATGCAT	1 cut(s)	1616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.