Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00549

Orthogroup ID

OG0005832

Physical Location & Seq

Genomic Coordinates Forward (+)

155589 .. 156098

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCACTCTTCCACGCCTCTCTCACACACCAATCCCTCTCCTTCTCCAAATCCCTAACCTCCCCAACCCTTCTCTTCCTCCACACAAACCTCTCCCTCTCCCTCTCCCTTAAACCCTTAACCCGAAAGCCCACATTCATCCGAATGGGCGGCGGGCCCAGAACCTTCCCCAGCGGTGTATACAAGTGGCAGTGGAAGCGCATGCAGGCCAAGAAAGCCAAGCAGCTCCTCAAGGCCCGCCTCTGCCGTGAGCACCAAATCTACAAGATGCAAGGCGAGCTGAGCTCAAAACCGCCGTGTCGGAGCTCGAGGGAGACCGTTGAGAAGCCTCCCAATTTGTTCTCCATCAGCGCTGATGAGCAGGTTAAGGTCTTGGCCGATCAGTTCCAGAGGCCGGGAGGGTTTGACTTGTGGACTGAGAGGTATGGGCCAGAGCTGTTTCGGACCATGGAAGACCTGCCGTCGGCGAGGGTTTTTCCCAAGGGGGTTGTGCATAGTGAGGCCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

19.28

Weight (kDa)

10.15

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37920
fragaria_vesca	FvH4_6g12760 FvH4_6g12760
malus_domestica	MD04G1138600.v1.1 MD12G1154300.v1.1
prunus_persica	Prupe.6G264200_v2.0.a1
pyrus_communis	pycom04g12680 pycom12g14670
rosa_chinensis	RchiOBHm_Chr2g0112341 RchiOBHm_Chr3g0464731 RchiOBHm_Chr4g0392921
rosa_laevigata	RLG00000024675
rosa_multiflora	Rmu_sc0002031.1_g000002 Rmu_sc0002549.1_g000019
rosa_roxburghii	Rroxscaffold_2G00085440 Rroxscaffold_6G00415450
rosa_rugosa	Rorug03G0073700
rosa_samantha	Rh2AG233000 Rh2CG237400 Rh2DG240600 Rh3BG136200 Rh3CG138800 Rh3DG137700 Rh4DG244800 Rh5DG414900 Rh6AG177700
rosa_wichuraiana	Rw0G012330 Rw3G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	352, 465
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	5 cut(s)	150, 153, 174, 238, 293
AcoI	YGGCCR	1 cut(s)	375
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	394, 463
AhdI	GACNNNNNGTC	1 cut(s)	460
AluBI	AGCT	5 cut(s)	226, 280, 285, 306, 436
AluI	AGCT	5 cut(s)	226, 280, 285, 306, 436
Alw21I	GWGCWC	3 cut(s)	255, 287, 308
Alw26I	GTCTC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	307
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	7 cut(s)	155, 207, 234, 375, 392, 428, 501
ApaI	GGGCCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	223
AspLEI	GCGC	2 cut(s)	201, 353
AspS9I	GGNCC	5 cut(s)	155, 156, 235, 428, 444
AsuC2I	CCSGG	1 cut(s)	396
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	159
BanII	GRGCYC	3 cut(s)	159, 287, 308
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	3 cut(s)	255, 287, 308
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	4 cut(s)	231, 280, 445, 488
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	354
BfuAI	ACCTGC	2 cut(s)	352, 465
BisI	GCNGC	2 cut(s)	151, 224
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	2 cut(s)	152, 225
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	1 cut(s)	444
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	5 cut(s)	155, 156, 235, 428, 444
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	459
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	447, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 463
BseDI	CCNNGG	2 cut(s)	447, 480
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	394, 463
BseMII	CTCAG	2 cut(s)	272, 408
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	235
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	7 cut(s)	157, 209, 236, 377, 394, 430, 503
BsiHKAI	GWGCWC	3 cut(s)	255, 287, 308
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	394, 463
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	7 cut(s)	157, 209, 236, 377, 394, 430, 503
Bso31I	GGTCTC	1 cut(s)	308
BsoBI	CYCGRG	1 cut(s)	307
Bsp120I	GGGCCC	1 cut(s)	155
Bsp1286I	GDGCHC	4 cut(s)	159, 255, 287, 308
Bsp143I	GATC	1 cut(s)	379
Bsp1720I	GCTNAGC	1 cut(s)	281
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	5 cut(s)	150, 153, 174, 238, 293
BspANI	GGCC	7 cut(s)	157, 209, 236, 377, 394, 430, 503
BspCNI	CTCAG	2 cut(s)	273, 409
BspLI	GGNNCC	1 cut(s)	157
BspMI	ACCTGC	2 cut(s)	352, 465
BspTNI	GGTCTC	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	447, 480
BssMI	GATC	1 cut(s)	379
BssNAI	GTATAC	1 cut(s)	181
BssT1I	CCWWGG	2 cut(s)	447, 480
Bst1107I	GTATAC	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	2 cut(s)	14, 80
BstC8I	GCNNGC	5 cut(s)	155, 203, 207, 238, 278
BstDEI	CTNAG	2 cut(s)	281, 417
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	201, 353
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 215, 277, 282
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	459
BstZ17I	GTATAC	1 cut(s)	181
BsuRI	GGCC	7 cut(s)	157, 209, 236, 377, 394, 430, 503
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	197
BveI	ACCTGC	2 cut(s)	352, 465
Cac8I	GCNNGC	5 cut(s)	155, 203, 207, 238, 278
CfoI	GCGC	2 cut(s)	201, 353
Cfr13I	GGNCC	5 cut(s)	155, 156, 235, 428, 444
CviAII	CATG	2 cut(s)	202, 448
DdeI	CTNAG	2 cut(s)	281, 417
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DriI	GACNNNNNGTC	1 cut(s)	460
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	14, 80
Eam1105I	GACNNNNNGTC	1 cut(s)	460
EarI	CTCTTC	2 cut(s)	14, 80
Ecl136II	GAGCTC	2 cut(s)	285, 306
Eco130I	CCWWGG	2 cut(s)	447, 480
Eco24I	GRGCYC	3 cut(s)	159, 287, 308
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	444
Eco47III	AGCGCT	1 cut(s)	352
Eco53kI	GAGCTC	2 cut(s)	285, 306
Eco88I	CYCGRG	1 cut(s)	307
EcoICRI	GAGCTC	2 cut(s)	285, 306
EcoT14I	CCWWGG	2 cut(s)	447, 480
EcoT38I	GRGCYC	3 cut(s)	159, 287, 308
ErhI	CCWWGG	2 cut(s)	447, 480
FaeI	CATG	2 cut(s)	205, 451
FaiI	YATR	5 cut(s)	181, 203, 426, 449, 495
FatI	CATG	2 cut(s)	201, 447
FauI	CCCGC	2 cut(s)	146, 245
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	151, 224
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	3 cut(s)	159, 287, 308
Fsp4HI	GCNGC	2 cut(s)	151, 224
GlaI	GCGC	2 cut(s)	200, 352
GluI	GCNGC	2 cut(s)	151, 224
GsaI	CCCAGC	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	7 cut(s)	157, 209, 236, 377, 394, 430, 503
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	2 cut(s)	201, 353
Hin1II	CATG	2 cut(s)	205, 451
Hin6I	GCGC	2 cut(s)	199, 351
HinP1I	GCGC	2 cut(s)	199, 351
HpaII	CCGG	1 cut(s)	395
Hpy166II	GTNNAC	2 cut(s)	181, 414
Hpy188I	TCNGA	3 cut(s)	143, 303, 444
Hpy188III	TCNNGA	1 cut(s)	388
Hpy8I	GTNNAC	2 cut(s)	181, 414
Hpy99I	CGWCG	1 cut(s)	466
HpyAV	CCTTC	3 cut(s)	52, 80, 175
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	3 cut(s)	205, 271, 493
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 215, 277, 282
HpyF3I	CTNAG	2 cut(s)	281, 417
Hsp92II	CATG	2 cut(s)	205, 451
HspAI	GCGC	2 cut(s)	199, 351
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	231, 303
LpnPI	CCDG	8 cut(s)	172, 184, 191, 347, 401, 408, 444, 470
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	2 cut(s)	67, 464
MhlI	GDGCHC	4 cut(s)	159, 255, 287, 308
MluCI	AATT	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	281
MseI	TTAA	3 cut(s)	111, 119, 366
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	4 cut(s)	196, 215, 277, 282
NciI	CCSGG	1 cut(s)	396
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	2 cut(s)	205, 451
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	152, 225
Psp124BI	GAGCTC	2 cut(s)	287, 308
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	157
PspOMI	GGGCCC	1 cut(s)	155
PspPI	GGNCC	5 cut(s)	155, 156, 235, 428, 444
PspXI	VCTCGAGB	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	2 cut(s)	287, 308
SaqAI	TTAA	3 cut(s)	111, 119, 366
SatI	GCNGC	2 cut(s)	151, 224
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	5 cut(s)	155, 156, 235, 428, 444
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	4 cut(s)	159, 255, 287, 308
SfaNI	GCATC	1 cut(s)	258
Sfr274I	CTCGAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	444
SlaI	CTCGAG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	230, 307
SmoI	CTYRAG	2 cut(s)	230, 307
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	5 cut(s)	150, 153, 174, 238, 293
SstI	GAGCTC	2 cut(s)	287, 308
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	2 cut(s)	447, 480
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	308
TasI	AATT	1 cut(s)	334
TauI	GCSGC	1 cut(s)	153
Tru1I	TTAA	3 cut(s)	111, 119, 366
Tru9I	TTAA	3 cut(s)	111, 119, 366
TscAI	CASTG	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	444
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.