Rh5DG414900

helicase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005832
Physical Location & Seq
Forward (+)
65939301 .. 65939757
457 bp
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UTR
Exon/CDS
Intron
Rh5DG414900.1

Sequence Viewer

Length: 171 bp
ATGCAGGCCAAGAAAGCCAAGCAGCTCCTTAAGGCCCGCCTCTGTCGCAAGCGCCAAATCTACGAGATGCGAAAGCGGGCCCATCTCAAAGCCGTCGTGTCGGAGCTCGAGCGCCCCTGGGAGACCGTCAAGAAGCCTCCCAATTTGTTCTCCGTCAGCGTTGATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.66

Weight (kDa)

10.6

Isoelectric Point (pI)

24.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 37, 76
AflII CTTAAG 1 cut(s) 29
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 2 cut(s) 25, 106
AluI AGCT 2 cut(s) 25, 106
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 3 cut(s) 6, 33, 78
ApaI GGGCCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 22
AspLEI GCGC 2 cut(s) 54, 114
AspS9I GGNCC 3 cut(s) 34, 78, 79
AvaI CYCGRG 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 82
BanII GRGCYC 2 cut(s) 82, 108
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 90
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 116
BfoI RGCGCY 2 cut(s) 55, 115
BfrI CTTAAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 3 cut(s) 34, 78, 79
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 116, 117
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 116, 117
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 3 cut(s) 8, 35, 80
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 3 cut(s) 8, 35, 80
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 107
Bsp120I GGGCCC 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 82, 108
BspACI CCGC 2 cut(s) 37, 76
BspANI GGCC 3 cut(s) 8, 35, 80
BspLI GGNNCC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 116, 117
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 127
BstAFI CTTAAG 1 cut(s) 29
BstC8I GCNNGC 4 cut(s) 6, 37, 50, 78
BstH2I RGCGCY 2 cut(s) 55, 115
BstHHI GCGC 2 cut(s) 54, 114
BstMAI GTCTC 1 cut(s) 116
BstMWI GCNNNNNNNGC 2 cut(s) 14, 45
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 34
BsuRI GGCC 3 cut(s) 8, 35, 80
Cac8I GCNNGC 4 cut(s) 6, 37, 50, 78
CfoI GCGC 2 cut(s) 54, 114
Cfr13I GGNCC 3 cut(s) 34, 78, 79
CviJI RGCY 8 cut(s) 8, 17, 25, 35, 80, 92, 106, 136
CviKI_1 RGCY 8 cut(s) 8, 17, 25, 35, 80, 92, 106, 136
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 2 cut(s) 82, 108
Eco31I GGTCTC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 2 cut(s) 82, 108
FauI CCCGC 2 cut(s) 44, 69
Fnu4HI GCNGC 1 cut(s) 23
FriOI GRGCYC 2 cut(s) 82, 108
Fsp4HI GCNGC 1 cut(s) 23
GlaI GCGC 2 cut(s) 53, 113
GluI GCNGC 1 cut(s) 23
HaeII RGCGCY 2 cut(s) 55, 115
HaeIII GGCC 3 cut(s) 8, 35, 80
HhaI GCGC 2 cut(s) 54, 114
Hin6I GCGC 2 cut(s) 52, 112
HinP1I GCGC 2 cut(s) 52, 112
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 45
HspAI GCGC 2 cut(s) 52, 112
LmnI GCTCC 2 cut(s) 30, 103
LpnPI CCDG 2 cut(s) 103, 130
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 57
MhlI GDGCHC 2 cut(s) 82, 108
MluCI AATT 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 2 cut(s) 50, 147
MseI TTAA 1 cut(s) 30
MspCI CTTAAG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 14, 45
NlaIV GGNNCC 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 107
PasI CCCWGGG 1 cut(s) 117
PkrI GCNGC 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 80
PspOMI GGGCCC 1 cut(s) 78
PspPI GGNCC 3 cut(s) 34, 78, 79
PspXI VCTCGAGB 1 cut(s) 107
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 23
Sau96I GGNCC 3 cut(s) 34, 78, 79
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 82, 108
SetI ASST 2 cut(s) 27, 108
SfaNI GCATC 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 29, 107
SmoI CTYRAG 2 cut(s) 29, 107
Sse9I AATT 1 cut(s) 142
SsiI CCGC 2 cut(s) 37, 76
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 142
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseI GCWGC 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 142
Vha464I CTTAAG 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.