Rw3G011150

helicase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0005832
Physical Location & Seq
Forward (+)
10807910 .. 10809581
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011150.1

Sequence Viewer

Length: 1020 bp
ATGTCAATCCTCCACACCTCTCTCACACACCAATCCCTCTCCTTCTCCAAATCCCTGACCTCCCCAACCCCTCTCTTCCTCCACACAAACCTCTCCCTTAAACCCTCAACCCCAAAGCCCACATTCATCCGAATGGGCGGCGGGCCCAGGACCTTCCCCGGCGGCGTATCCAAGTGGCAGTGGAAGCGCATGCAGGCCAAGAAAGCCAAGCAGCTCCTCAAGGCCCGCCTCTGCCGCGAGCGCCAAATCTACGAGATGCGAAAGCGGGCCGAGCTCAAGGCCGCCGTGTCGGAGCTCGAGCGCCCCTGGGAGACCGTCGAGAAGCCTCCCAATTTGTTCTCCGTCAGCGCCGACGAGCAGGTGAAGGTCTTGGCCGATCGGTTCCAGAGGCCGGGAGGGTTTGACCTGTGGACCGAGAGGGATGGGCCGGAGCTGTTCCGGACCATGGAGGACCTGCCGTCGGCGAGGTTTTTTCCCAAGGGGGTTGTGCATAGTGTGAGGCCGTATAGGAGGGTTGGGGCTGAGGAATTGGGGGAGGAGGAAGATGAGGGTTTTGGAGGAGTCAAGGGATTGGTTGAGGGGCTCAAGGGTGCAGAGAGGTCAAATGGGGAGGGTTTGAATTCGAAAAGTTCTTCGGTGAATTTTCGAAATGGGAGGATGTATAATGGTAAACTGAGGAGGAAGGGGAAGGGGAATGGGAATAGGGGAAATGCTGAAGCTTCAAGTGATGTTGATAGGAAACAGAGAGGACAGAGTCCTGTAATGCGCAGTGGCGAAAATGGGAATTCTAGGAGAAGTGGTGGATTGAAGTTGAATGGTCATGGTGTTGATAGGAGGTCTTCGCGTGGGTATAATTCGAGAGAAGGTGGTGTTGATAGGAGACAGAGAGGACAGGGTCGCATAATCCGCAGTGGGGAAATTACGCGTGATAGAAGGAAAGGTGCATTGAAATCGAAAGGTTCAGAGTCTGAAGTTTTTGATATGAGGTTGCGACAAGATGGGAGTTATGAATTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

38.08

Weight (kDa)

10.56

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 349
Acc16I TGCGCA 1 cut(s) 767
Acc36I ACCTGC 2 cut(s) 349, 462
AccII CGCG 3 cut(s) 237, 844, 925
AccIII TCCGGA 1 cut(s) 438
AciI CCGC 8 cut(s) 138, 141, 162, 226, 235, 265, 282, 907
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 4 cut(s) 619, 640, 784, 1010
AcuI CTGAAG 2 cut(s) 735, 990
AfiI CCNNNNNNNGG 4 cut(s) 391, 445, 460, 913
AflIII ACRYGT 1 cut(s) 923
AgsI TTSAA 5 cut(s) 619, 723, 808, 814, 949
AhdI GACNNNNNGTC 1 cut(s) 457
AjnI CCWGG 2 cut(s) 146, 305
AluBI AGCT 5 cut(s) 214, 274, 295, 433, 719
AluI AGCT 5 cut(s) 214, 274, 295, 433, 719
Alw21I GWGCWC 2 cut(s) 276, 297
Alw26I GTCTC 2 cut(s) 305, 874
AlwNI CAGNNNCTG 1 cut(s) 968
Ama87I CYCGRG 1 cut(s) 296
Aor13HI TCCGGA 1 cut(s) 438
AoxI GGCC 9 cut(s) 143, 195, 222, 267, 279, 372, 389, 425, 500
ApaI GGGCCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 4 cut(s) 619, 640, 784, 1010
AspLEI GCGC 5 cut(s) 189, 243, 303, 350, 768
AspS9I GGNCC 9 cut(s) 143, 144, 150, 223, 267, 411, 425, 441, 451
AsuC2I CCSGG 2 cut(s) 159, 393
AsuHPI GGTGA 2 cut(s) 373, 649
AsuII TTCGAA 2 cut(s) 623, 646
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 4 cut(s) 150, 411, 441, 451
BaeGI GKGCMC 1 cut(s) 147
BanII GRGCYC 4 cut(s) 147, 276, 297, 585
BbsI GAAGAC 1 cut(s) 831
Bbv12I GWGCWC 2 cut(s) 276, 297
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 223
BccI CCATC 2 cut(s) 416, 992
BceAI ACGGC 3 cut(s) 269, 442, 487
BcgI CGANNNNNNTGC 2 cut(s) 933, 967
BciT130I CCWGG 2 cut(s) 148, 307
BciVI GTATCC 1 cut(s) 178
BcnI CCSGG 2 cut(s) 159, 393
BcoDI GTCTC 2 cut(s) 305, 874
BfaI CTAG 1 cut(s) 789
BfoI RGCGCY 3 cut(s) 244, 304, 351
BfuAI ACCTGC 2 cut(s) 349, 462
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 5 cut(s) 139, 163, 212, 235, 282
BlsI GCNGC 5 cut(s) 140, 164, 213, 236, 283
Bme1390I CCNGG 4 cut(s) 148, 159, 307, 393
Bme18I GGWCC 4 cut(s) 150, 411, 441, 451
BmeRI GACNNNNNGTC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 9 cut(s) 143, 144, 150, 223, 267, 411, 425, 441, 451
BmiI GGNNCC 2 cut(s) 145, 383
BmrFI CCNGG 4 cut(s) 148, 159, 307, 393
BmsI GCATC 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 831
Bpu10I CCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 2 cut(s) 623, 646
BpuEI CTTGAG 3 cut(s) 203, 260, 569
BpuMI CCSGG 2 cut(s) 159, 393
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 6 cut(s) 146, 157, 305, 306, 444, 477
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 4 cut(s) 391, 445, 460, 913
BseAI TCCGGA 1 cut(s) 438
BseBI CCWGG 2 cut(s) 148, 307
BseDI CCNNGG 6 cut(s) 146, 157, 305, 306, 444, 477
BseGI GGATG 3 cut(s) 126, 427, 663
BseLI CCNNNNNNNGG 4 cut(s) 391, 445, 460, 913
BseMII CTCAG 2 cut(s) 513, 665
BseRI GAGGAG 4 cut(s) 206, 551, 573, 691
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 612
Bsh1236I CGCG 3 cut(s) 237, 844, 925
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 9 cut(s) 145, 197, 224, 269, 281, 374, 391, 427, 502
BsiEI CGRYCG 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 276, 297
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 4 cut(s) 159, 392, 428, 439
BslI CCNNNNNNNGG 4 cut(s) 391, 445, 460, 913
BsmAI GTCTC 2 cut(s) 305, 874
BsnI GGCC 9 cut(s) 145, 197, 224, 269, 281, 374, 391, 427, 502
Bso31I GGTCTC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 296
Bsp119I TTCGAA 2 cut(s) 623, 646
Bsp120I GGGCCC 1 cut(s) 143
Bsp1286I GDGCHC 4 cut(s) 147, 276, 297, 585
Bsp13I TCCGGA 1 cut(s) 438
Bsp143I GATC 1 cut(s) 376
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 8 cut(s) 138, 141, 162, 226, 235, 265, 282, 907
BspANI GGCC 9 cut(s) 145, 197, 224, 269, 281, 374, 391, 427, 502
BspCNI CTCAG 2 cut(s) 514, 666
BspEI TCCGGA 1 cut(s) 438
BspFNI CGCG 3 cut(s) 237, 844, 925
BspLI GGNNCC 2 cut(s) 145, 383
BspMI ACCTGC 2 cut(s) 349, 462
BspT104I TTCGAA 2 cut(s) 623, 646
BspTNI GGTCTC 1 cut(s) 305
BssECI CCNNGG 6 cut(s) 146, 157, 305, 306, 444, 477
BssMI GATC 1 cut(s) 376
BssT1I CCWWGG 2 cut(s) 444, 477
Bst2UI CCWGG 2 cut(s) 148, 307
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 80
BstBI TTCGAA 2 cut(s) 623, 646
BstC8I GCNNGC 6 cut(s) 143, 191, 195, 226, 239, 267
BstDEI CTNAG 2 cut(s) 522, 674
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 3 cut(s) 126, 427, 663
BstFNI CGCG 3 cut(s) 237, 844, 925
BstH2I RGCGCY 3 cut(s) 244, 304, 351
BstHHI GCGC 5 cut(s) 189, 243, 303, 350, 768
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 2 cut(s) 305, 874
BstMBI GATC 1 cut(s) 376
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 6 cut(s) 184, 203, 234, 240, 271, 906
BstNI CCWGG 2 cut(s) 148, 307
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 4 cut(s) 146, 157, 305, 391
BstSLI GKGCMC 1 cut(s) 147
BstUI CGCG 3 cut(s) 237, 844, 925
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 831
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 9 cut(s) 145, 197, 224, 269, 281, 374, 391, 427, 502
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 3 cut(s) 126, 427, 663
BtsI GCAGTG 3 cut(s) 185, 775, 916
BtsIMutI CAGTG 3 cut(s) 185, 775, 916
BveI ACCTGC 2 cut(s) 349, 462
Cac8I GCNNGC 6 cut(s) 143, 191, 195, 226, 239, 267
CaiI CAGNNNCTG 1 cut(s) 968
CfoI GCGC 5 cut(s) 189, 243, 303, 350, 768
Cfr13I GGNCC 9 cut(s) 143, 144, 150, 223, 267, 411, 425, 441, 451
CviAII CATG 3 cut(s) 190, 445, 821
DdeI CTNAG 2 cut(s) 522, 674
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
DriI GACNNNNNGTC 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 80
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 80
Ecl136II GAGCTC 2 cut(s) 274, 295
Eco130I CCWWGG 2 cut(s) 444, 477
Eco24I GRGCYC 4 cut(s) 147, 276, 297, 585
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 4 cut(s) 150, 411, 441, 451
Eco53kI GAGCTC 2 cut(s) 274, 295
Eco57I CTGAAG 2 cut(s) 735, 990
Eco88I CYCGRG 1 cut(s) 296
EcoICRI GAGCTC 2 cut(s) 274, 295
EcoO109I RGGNCCY 2 cut(s) 150, 451
EcoRI GAATTC 2 cut(s) 619, 784
EcoRII CCWGG 2 cut(s) 146, 305
EcoT14I CCWWGG 2 cut(s) 444, 477
EcoT38I GRGCYC 4 cut(s) 147, 276, 297, 585
ErhI CCWWGG 2 cut(s) 444, 477
FaeI CATG 3 cut(s) 193, 448, 824
FatI CATG 3 cut(s) 189, 444, 820
FauI CCCGC 3 cut(s) 134, 233, 258
Fnu4HI GCNGC 5 cut(s) 139, 163, 212, 235, 282
FokI GGATG 3 cut(s) 113, 434, 670
FriOI GRGCYC 4 cut(s) 147, 276, 297, 585
Fsp4HI GCNGC 5 cut(s) 139, 163, 212, 235, 282
FspBI CTAG 1 cut(s) 789
FspI TGCGCA 1 cut(s) 767
GlaI GCGC 5 cut(s) 188, 242, 302, 349, 767
GluI GCNGC 5 cut(s) 139, 163, 212, 235, 282
HaeII RGCGCY 3 cut(s) 244, 304, 351
HaeIII GGCC 9 cut(s) 145, 197, 224, 269, 281, 374, 391, 427, 502
HapII CCGG 4 cut(s) 159, 392, 428, 439
HhaI GCGC 5 cut(s) 189, 243, 303, 350, 768
Hin1II CATG 3 cut(s) 193, 448, 824
Hin6I GCGC 5 cut(s) 187, 241, 301, 348, 766
HinP1I GCGC 5 cut(s) 187, 241, 301, 348, 766
HindIII AAGCTT 1 cut(s) 717
HinfI GANTC 3 cut(s) 561, 754, 965
HpaII CCGG 4 cut(s) 159, 392, 428, 439
HphI GGTGA 2 cut(s) 373, 649
Hpy166II GTNNAC 2 cut(s) 411, 671
Hpy188I TCNGA 4 cut(s) 131, 292, 964, 970
Hpy188III TCNNGA 4 cut(s) 319, 385, 439, 858
Hpy8I GTNNAC 2 cut(s) 411, 671
Hpy99I CGWCG 3 cut(s) 320, 356, 463
HpyAV CCTTC 7 cut(s) 52, 163, 358, 676, 682, 857, 927
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 193, 490, 593, 944
HpyF10VI GCNNNNNNNGC 6 cut(s) 184, 203, 234, 240, 271, 906
HpyF3I CTNAG 2 cut(s) 522, 674
Hsp92II CATG 3 cut(s) 193, 448, 824
HspAI GCGC 5 cut(s) 187, 241, 301, 348, 766
Kpn2I TCCGGA 1 cut(s) 438
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 3 cut(s) 219, 292, 430
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 246
MaeI CTAG 1 cut(s) 789
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 4 cut(s) 67, 554, 624, 831
MhlI GDGCHC 4 cut(s) 147, 276, 297, 585
MluCI AATT 8 cut(s) 331, 527, 619, 640, 784, 853, 918, 1010
MluI ACGCGT 1 cut(s) 923
MlyI GAGTC 3 cut(s) 570, 763, 974
MmeI TCCRAC 1 cut(s) 270
MroI TCCGGA 1 cut(s) 438
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 4 cut(s) 159, 392, 428, 439
MspR9I CCNGG 4 cut(s) 148, 159, 307, 393
MvaI CCWGG 2 cut(s) 148, 307
MvnI CGCG 3 cut(s) 237, 844, 925
MwoI GCNNNNNNNGC 6 cut(s) 184, 203, 234, 240, 271, 906
NciI CCSGG 2 cut(s) 159, 393
NcoI CCATGG 1 cut(s) 444
NdeII GATC 1 cut(s) 376
NlaIII CATG 3 cut(s) 193, 448, 824
NlaIV GGNNCC 2 cut(s) 145, 383
NmeAIII GCCGAG 1 cut(s) 295
NsbI TGCGCA 1 cut(s) 767
NspI RCATGY 1 cut(s) 193
NspV TTCGAA 2 cut(s) 623, 646
PaeI GCATGC 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 296
PaqCI CACCTGC 1 cut(s) 349
PasI CCCWGGG 1 cut(s) 306
PflFI GACNNNGTC 2 cut(s) 753, 894
PkrI GCNGC 5 cut(s) 140, 164, 213, 236, 283
Ple19I CGATCG 1 cut(s) 379
PleI GAGTC 3 cut(s) 569, 762, 973
PpsI GAGTC 3 cut(s) 569, 762, 973
PpuMI RGGWCCY 2 cut(s) 150, 451
Psp124BI GAGCTC 2 cut(s) 276, 297
Psp5II RGGWCCY 2 cut(s) 150, 451
Psp6I CCWGG 2 cut(s) 146, 305
PspGI CCWGG 2 cut(s) 146, 305
PspN4I GGNNCC 2 cut(s) 145, 383
PspOMI GGGCCC 1 cut(s) 143
PspPI GGNCC 9 cut(s) 143, 144, 150, 223, 267, 411, 425, 441, 451
PspPPI RGGWCCY 2 cut(s) 150, 451
PspXI VCTCGAGB 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 968
PsyI GACNNNGTC 2 cut(s) 753, 894
PvuI CGATCG 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 131
SacI GAGCTC 2 cut(s) 276, 297
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 5 cut(s) 139, 163, 212, 235, 282
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 9 cut(s) 143, 144, 150, 223, 267, 411, 425, 441, 451
SchI GAGTC 3 cut(s) 570, 763, 974
ScrFI CCNGG 4 cut(s) 148, 159, 307, 393
SduI GDGCHC 4 cut(s) 147, 276, 297, 585
SfaNI GCATC 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 296
SfuI TTCGAA 2 cut(s) 623, 646
SinI GGWCC 4 cut(s) 150, 411, 441, 451
SlaI CTCGAG 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 4 cut(s) 218, 275, 296, 584
SmoI CTYRAG 4 cut(s) 218, 275, 296, 584
SphI GCATGC 1 cut(s) 193
Sse9I AATT 8 cut(s) 331, 527, 619, 640, 784, 853, 918, 1010
SsiI CCGC 8 cut(s) 138, 141, 162, 226, 235, 265, 282, 907
SspMI CTAG 1 cut(s) 789
SstI GAGCTC 2 cut(s) 276, 297
StyD4I CCNGG 4 cut(s) 146, 157, 305, 391
StyI CCWWGG 2 cut(s) 444, 477
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 6 cut(s) 297, 318, 623, 646, 857, 953
TaqII GACCGA 1 cut(s) 428
TasI AATT 8 cut(s) 331, 527, 619, 640, 784, 853, 918, 1010
TauI GCSGC 4 cut(s) 141, 165, 237, 284
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 3 cut(s) 185, 775, 916
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 115, 1004
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 3 cut(s) 185, 775, 916
Tth111I GACNNNGTC 2 cut(s) 753, 894
VpaK11BI GGWCC 4 cut(s) 150, 411, 441, 451
XapI RAATTY 4 cut(s) 619, 640, 784, 1010
XceI RCATGY 1 cut(s) 193
XhoI CTCGAG 1 cut(s) 296
XspI CTAG 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.