Rh3CG138800

helicase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005832
Physical Location & Seq
Forward (+)
11395963 .. 11400023
4061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG138800.1

Sequence Viewer

Length: 1026 bp
ATGTCAATCCTCCACACCTCTCTCACACACCAATCCCTCTCCTTCTCCAAATCCCTGACCTCCCCAACCCCTCTCTTCCTCCACACAAACCTCTCCCTTAAACCCTTAACCCCAAAGCCCACATTCATCCGAATGGGCGGCGGGCCCAGGACCTTCCCCGGCGGCGTATCCAAGTGGCAGTGGAAGCGCATGCAGGCCAAGAAAGCCAAGCAGCTCCTCAAGGCCCGCCTCTGCCGCGAGCGCCAAATCTACGAGATGCGAAAGCGGGCGGAGCTCAAGGCCGCCGTGTCGGAGCTCGAGCGCCCCTGGGAGACCGTCGAGAAGCCTCCCAATTTGTTCTCCGTCAGCGCCGATGAGCAGGTGAAGGTCTTGGCCGATCGGTTCCAGAGGCCGGGAGGGTTTGACCTGTGGACCGAGAGGGATGGGCCGGAGCTGTTCCGGACCATGGAGGACCTGCCGTCGGCAAGGTTTTTTCCCAAGGGGGTAGTGCATAGTGTGAGGCCGTACAGGAGGATTGGGGCTGAGGAATTGGGGGAGGAGGAAGATGAGGGTTTTGGAGGAGTCAAGGGATTGGTTGAGGGGCTTAAGGGTGCAGAGAGGTCAAATGGGGAGGGTTTGAATTCGAAAAGTTGTTCGGAGTCGGTGAATTTTCGAAATGGGAGGATGTATAATGGTAAACTGAGGAGGAAGGGGAAGGGGAAAGGGAATAGGGGAAATGCTGAAGCTTCAAGTGATGTTGATAGGAAACAGAGAGGACAGAGTCCTGTAATGCGCAGTGGCGAAAATGGGAATTCTAGGAGAAGTGGTGGATTGAAGTTGAATGGTCATGGTGTTGATAGGAGGTCTTCGCGTGGGTATAATTCGAGAGAAGGTGGTGTTGATAGGAGACAGAGAGGACAGGGTCACATAATCCACAGTGGGGAAGATACGCGTGATACAAGGAAAGGTGCATTGAAATCGAAAGGTTCAGAGTCTGAAGTTTTTGATATGAGGTTGCGACAAGATGGGAGCTATGAATTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

38.27

Weight (kDa)

10.23

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 349
Acc16I TGCGCA 1 cut(s) 773
Acc36I ACCTGC 2 cut(s) 349, 462
AccII CGCG 3 cut(s) 237, 850, 931
AccIII TCCGGA 1 cut(s) 438
AciI CCGC 8 cut(s) 138, 141, 162, 226, 235, 265, 269, 282
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 4 cut(s) 619, 646, 790, 1016
AcuI CTGAAG 2 cut(s) 741, 996
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 4 cut(s) 391, 445, 460, 919
AflII CTTAAG 1 cut(s) 584
AflIII ACRYGT 1 cut(s) 929
AgsI TTSAA 5 cut(s) 619, 729, 814, 820, 955
AhdI GACNNNNNGTC 1 cut(s) 457
AjnI CCWGG 2 cut(s) 146, 305
AluBI AGCT 6 cut(s) 214, 274, 295, 433, 725, 1011
AluI AGCT 6 cut(s) 214, 274, 295, 433, 725, 1011
Alw21I GWGCWC 2 cut(s) 276, 297
Alw26I GTCTC 2 cut(s) 305, 880
AlwNI CAGNNNCTG 1 cut(s) 974
Ama87I CYCGRG 1 cut(s) 296
Aor13HI TCCGGA 1 cut(s) 438
AoxI GGCC 8 cut(s) 143, 195, 222, 279, 372, 389, 425, 500
ApaI GGGCCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 4 cut(s) 619, 646, 790, 1016
AspLEI GCGC 5 cut(s) 189, 243, 303, 350, 774
AspS9I GGNCC 8 cut(s) 143, 144, 150, 223, 411, 425, 441, 451
AsuC2I CCSGG 2 cut(s) 159, 393
AsuHPI GGTGA 2 cut(s) 373, 655
AsuII TTCGAA 2 cut(s) 623, 652
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 4 cut(s) 150, 411, 441, 451
BaeGI GKGCMC 1 cut(s) 147
BanII GRGCYC 3 cut(s) 147, 276, 297
BbsI GAAGAC 1 cut(s) 837
Bbv12I GWGCWC 2 cut(s) 276, 297
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 223
BccI CCATC 2 cut(s) 416, 998
BceAI ACGGC 3 cut(s) 269, 442, 487
BcgI CGANNNNNNTGC 2 cut(s) 939, 973
BciT130I CCWGG 2 cut(s) 148, 307
BciVI GTATCC 1 cut(s) 178
BcnI CCSGG 2 cut(s) 159, 393
BcoDI GTCTC 2 cut(s) 305, 880
BfaI CTAG 1 cut(s) 795
BfoI RGCGCY 3 cut(s) 244, 304, 351
BfrI CTTAAG 1 cut(s) 584
BfuAI ACCTGC 2 cut(s) 349, 462
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 5 cut(s) 139, 163, 212, 235, 282
BlsI GCNGC 5 cut(s) 140, 164, 213, 236, 283
Bme1390I CCNGG 4 cut(s) 148, 159, 307, 393
Bme18I GGWCC 4 cut(s) 150, 411, 441, 451
BmeRI GACNNNNNGTC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 8 cut(s) 143, 144, 150, 223, 411, 425, 441, 451
BmiI GGNNCC 2 cut(s) 145, 383
BmrFI CCNGG 4 cut(s) 148, 159, 307, 393
BmsI GCATC 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 837
Bpu10I CCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 2 cut(s) 623, 652
BpuEI CTTGAG 2 cut(s) 203, 260
BpuMI CCSGG 2 cut(s) 159, 393
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 6 cut(s) 146, 157, 305, 306, 444, 477
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 790, 820
Bsc4I CCNNNNNNNGG 4 cut(s) 391, 445, 460, 919
BseAI TCCGGA 1 cut(s) 438
BseBI CCWGG 2 cut(s) 148, 307
BseDI CCNNGG 6 cut(s) 146, 157, 305, 306, 444, 477
BseGI GGATG 3 cut(s) 126, 427, 669
BseLI CCNNNNNNNGG 4 cut(s) 391, 445, 460, 919
BseMII CTCAG 2 cut(s) 513, 671
BseRI GAGGAG 4 cut(s) 206, 551, 573, 697
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 612
Bsh1236I CGCG 3 cut(s) 237, 850, 931
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 8 cut(s) 145, 197, 224, 281, 374, 391, 427, 502
BsiEI CGRYCG 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 276, 297
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 4 cut(s) 159, 392, 428, 439
BslI CCNNNNNNNGG 4 cut(s) 391, 445, 460, 919
BsmAI GTCTC 2 cut(s) 305, 880
BsnI GGCC 8 cut(s) 145, 197, 224, 281, 374, 391, 427, 502
Bso31I GGTCTC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 296
Bsp119I TTCGAA 2 cut(s) 623, 652
Bsp120I GGGCCC 1 cut(s) 143
Bsp1286I GDGCHC 3 cut(s) 147, 276, 297
Bsp13I TCCGGA 1 cut(s) 438
Bsp143I GATC 1 cut(s) 376
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 8 cut(s) 138, 141, 162, 226, 235, 265, 269, 282
BspANI GGCC 8 cut(s) 145, 197, 224, 281, 374, 391, 427, 502
BspCNI CTCAG 2 cut(s) 514, 672
BspEI TCCGGA 1 cut(s) 438
BspFNI CGCG 3 cut(s) 237, 850, 931
BspLI GGNNCC 2 cut(s) 145, 383
BspMI ACCTGC 2 cut(s) 349, 462
BspT104I TTCGAA 2 cut(s) 623, 652
BspTI CTTAAG 1 cut(s) 584
BspTNI GGTCTC 1 cut(s) 305
BssECI CCNNGG 6 cut(s) 146, 157, 305, 306, 444, 477
BssMI GATC 1 cut(s) 376
BssT1I CCWWGG 2 cut(s) 444, 477
Bst2UI CCWGG 2 cut(s) 148, 307
Bst4CI ACNGT 2 cut(s) 316, 917
Bst6I CTCTTC 1 cut(s) 80
BstAFI CTTAAG 1 cut(s) 584
BstBI TTCGAA 2 cut(s) 623, 652
BstC8I GCNNGC 6 cut(s) 143, 191, 195, 226, 239, 267
BstDEI CTNAG 2 cut(s) 522, 680
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 3 cut(s) 126, 427, 669
BstFNI CGCG 3 cut(s) 237, 850, 931
BstH2I RGCGCY 3 cut(s) 244, 304, 351
BstHHI GCGC 5 cut(s) 189, 243, 303, 350, 774
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 2 cut(s) 305, 880
BstMBI GATC 1 cut(s) 376
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 5 cut(s) 184, 203, 234, 240, 271
BstNI CCWGG 2 cut(s) 148, 307
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 4 cut(s) 146, 157, 305, 391
BstSLI GKGCMC 1 cut(s) 147
BstUI CGCG 3 cut(s) 237, 850, 931
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 837
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 8 cut(s) 145, 197, 224, 281, 374, 391, 427, 502
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 3 cut(s) 126, 427, 669
BtsI GCAGTG 2 cut(s) 185, 781
BtsIMutI CAGTG 3 cut(s) 185, 781, 922
BveI ACCTGC 2 cut(s) 349, 462
Cac8I GCNNGC 6 cut(s) 143, 191, 195, 226, 239, 267
CaiI CAGNNNCTG 1 cut(s) 974
CfoI GCGC 5 cut(s) 189, 243, 303, 350, 774
Cfr13I GGNCC 8 cut(s) 143, 144, 150, 223, 411, 425, 441, 451
Csp6I GTAC 1 cut(s) 505
CviAII CATG 3 cut(s) 190, 445, 827
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 2 cut(s) 522, 680
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
DriI GACNNNNNGTC 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 80
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 284
Ecl136II GAGCTC 2 cut(s) 274, 295
Eco130I CCWWGG 2 cut(s) 444, 477
Eco24I GRGCYC 3 cut(s) 147, 276, 297
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 4 cut(s) 150, 411, 441, 451
Eco53kI GAGCTC 2 cut(s) 274, 295
Eco57I CTGAAG 2 cut(s) 741, 996
Eco88I CYCGRG 1 cut(s) 296
EcoICRI GAGCTC 2 cut(s) 274, 295
EcoO109I RGGNCCY 2 cut(s) 150, 451
EcoRI GAATTC 2 cut(s) 619, 790
EcoRII CCWGG 2 cut(s) 146, 305
EcoT14I CCWWGG 2 cut(s) 444, 477
EcoT38I GRGCYC 3 cut(s) 147, 276, 297
ErhI CCWWGG 2 cut(s) 444, 477
FaeI CATG 3 cut(s) 193, 448, 830
FaiI YATR 9 cut(s) 191, 446, 492, 669, 828, 858, 908, 989, 1014
FatI CATG 3 cut(s) 189, 444, 826
FauI CCCGC 3 cut(s) 134, 233, 258
Fnu4HI GCNGC 5 cut(s) 139, 163, 212, 235, 282
FokI GGATG 3 cut(s) 113, 434, 676
FriOI GRGCYC 3 cut(s) 147, 276, 297
Fsp4HI GCNGC 5 cut(s) 139, 163, 212, 235, 282
FspBI CTAG 1 cut(s) 795
FspI TGCGCA 1 cut(s) 773
GlaI GCGC 5 cut(s) 188, 242, 302, 349, 773
GluI GCNGC 5 cut(s) 139, 163, 212, 235, 282
HaeII RGCGCY 3 cut(s) 244, 304, 351
HaeIII GGCC 8 cut(s) 145, 197, 224, 281, 374, 391, 427, 502
HapII CCGG 4 cut(s) 159, 392, 428, 439
HhaI GCGC 5 cut(s) 189, 243, 303, 350, 774
Hin1II CATG 3 cut(s) 193, 448, 830
Hin6I GCGC 5 cut(s) 187, 241, 301, 348, 772
HinP1I GCGC 5 cut(s) 187, 241, 301, 348, 772
HindIII AAGCTT 1 cut(s) 723
HinfI GANTC 4 cut(s) 561, 638, 760, 971
HpaII CCGG 4 cut(s) 159, 392, 428, 439
HphI GGTGA 2 cut(s) 373, 655
Hpy166II GTNNAC 2 cut(s) 411, 677
Hpy188I TCNGA 5 cut(s) 131, 292, 637, 970, 976
Hpy188III TCNNGA 4 cut(s) 319, 385, 439, 864
Hpy8I GTNNAC 2 cut(s) 411, 677
Hpy99I CGWCG 2 cut(s) 320, 463
HpyAV CCTTC 6 cut(s) 52, 163, 358, 682, 688, 863
HpyCH4III ACNGT 2 cut(s) 316, 917
HpyCH4V TGCA 4 cut(s) 193, 490, 593, 950
HpyF10VI GCNNNNNNNGC 5 cut(s) 184, 203, 234, 240, 271
HpyF3I CTNAG 2 cut(s) 522, 680
Hsp92II CATG 3 cut(s) 193, 448, 830
HspAI GCGC 5 cut(s) 187, 241, 301, 348, 772
Kpn2I TCCGGA 1 cut(s) 438
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 5 cut(s) 219, 271, 292, 430, 1008
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 246
MaeI CTAG 1 cut(s) 795
MaeIII GTNAC 1 cut(s) 902
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 4 cut(s) 67, 554, 837, 935
MhlI GDGCHC 3 cut(s) 147, 276, 297
MluCI AATT 7 cut(s) 331, 527, 619, 646, 790, 859, 1016
MluI ACGCGT 1 cut(s) 929
MlyI GAGTC 4 cut(s) 570, 647, 769, 980
MmeI TCCRAC 1 cut(s) 270
MroI TCCGGA 1 cut(s) 438
MseI TTAA 3 cut(s) 99, 107, 585
MslI CAYNNNNRTG 1 cut(s) 131
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 4 cut(s) 159, 392, 428, 439
MspR9I CCNGG 4 cut(s) 148, 159, 307, 393
MvaI CCWGG 2 cut(s) 148, 307
MvnI CGCG 3 cut(s) 237, 850, 931
MwoI GCNNNNNNNGC 5 cut(s) 184, 203, 234, 240, 271
NciI CCSGG 2 cut(s) 159, 393
NcoI CCATGG 1 cut(s) 444
NdeII GATC 1 cut(s) 376
NlaIII CATG 3 cut(s) 193, 448, 830
NlaIV GGNNCC 2 cut(s) 145, 383
NmuCI GTSAC 1 cut(s) 902
NsbI TGCGCA 1 cut(s) 773
NspI RCATGY 1 cut(s) 193
NspV TTCGAA 2 cut(s) 623, 652
PaeI GCATGC 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 296
PaqCI CACCTGC 1 cut(s) 349
PasI CCCWGGG 1 cut(s) 306
PflFI GACNNNGTC 2 cut(s) 759, 900
PkrI GCNGC 5 cut(s) 140, 164, 213, 236, 283
Ple19I CGATCG 1 cut(s) 379
PleI GAGTC 4 cut(s) 569, 646, 768, 979
PpsI GAGTC 4 cut(s) 569, 646, 768, 979
PpuMI RGGWCCY 2 cut(s) 150, 451
Psp124BI GAGCTC 2 cut(s) 276, 297
Psp5II RGGWCCY 2 cut(s) 150, 451
Psp6I CCWGG 2 cut(s) 146, 305
PspGI CCWGG 2 cut(s) 146, 305
PspN4I GGNNCC 2 cut(s) 145, 383
PspOMI GGGCCC 1 cut(s) 143
PspPI GGNCC 8 cut(s) 143, 144, 150, 223, 411, 425, 441, 451
PspPPI RGGWCCY 2 cut(s) 150, 451
PspXI VCTCGAGB 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 974
PsyI GACNNNGTC 2 cut(s) 759, 900
PvuI CGATCG 1 cut(s) 379
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
RseI CAYNNNNRTG 1 cut(s) 131
SacI GAGCTC 2 cut(s) 276, 297
SaqAI TTAA 3 cut(s) 99, 107, 585
SatI GCNGC 5 cut(s) 139, 163, 212, 235, 282
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 8 cut(s) 143, 144, 150, 223, 411, 425, 441, 451
SchI GAGTC 4 cut(s) 570, 647, 769, 980
ScrFI CCNGG 4 cut(s) 148, 159, 307, 393
SduI GDGCHC 3 cut(s) 147, 276, 297
SfaNI GCATC 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 296
SfuI TTCGAA 2 cut(s) 623, 652
SinI GGWCC 4 cut(s) 150, 411, 441, 451
SlaI CTCGAG 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 4 cut(s) 218, 275, 296, 584
SmoI CTYRAG 4 cut(s) 218, 275, 296, 584
SphI GCATGC 1 cut(s) 193
Sse9I AATT 7 cut(s) 331, 527, 619, 646, 790, 859, 1016
SsiI CCGC 8 cut(s) 138, 141, 162, 226, 235, 265, 269, 282
SspMI CTAG 1 cut(s) 795
SstI GAGCTC 2 cut(s) 276, 297
StyD4I CCNGG 4 cut(s) 146, 157, 305, 391
StyI CCWWGG 2 cut(s) 444, 477
TaaI ACNGT 2 cut(s) 316, 917
TaqI TCGA 6 cut(s) 297, 318, 623, 652, 863, 959
TaqII GACCGA 1 cut(s) 428
TasI AATT 7 cut(s) 331, 527, 619, 646, 790, 859, 1016
TauI GCSGC 4 cut(s) 141, 165, 237, 284
Tru1I TTAA 3 cut(s) 99, 107, 585
Tru9I TTAA 3 cut(s) 99, 107, 585
TscAI CASTG 3 cut(s) 185, 781, 922
TseFI GTSAC 1 cut(s) 902
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 902
TspDTI ATGAA 2 cut(s) 115, 1010
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 3 cut(s) 185, 781, 922
Tth111I GACNNNGTC 2 cut(s) 759, 900
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 4 cut(s) 150, 411, 441, 451
XapI RAATTY 4 cut(s) 619, 646, 790, 1016
XceI RCATGY 1 cut(s) 193
XhoI CTCGAG 1 cut(s) 296
XspI CTAG 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.