FvH4_6g12760

helicase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005832
Physical Location & Seq
Forward (+)
7726501 .. 7727881
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12760.t1

Sequence Viewer

Length: 849 bp
ATGTCAGTCCTCTCCTTCTCCAAATCCCTAGCCTCCCCTCTCTTCCTCCACCCACCCCTCCTCTTTCTCAAACCCTCCCCCCAAAAGCCCACCCTCATCCGCATGGGCGGCGGCCCCAGAACCTTCCCCGGCGGCGTCTCCAAGTGGCAGTGGAAGCGCATGCAGGCCAAGAAAGCCAAGCAGCTCCTCAAGGCCCGCCTCACCCGCGAGCGCCAAATCTACGAGATGCGCAAGCGCGCCGAGCTCAAGGCCGCCGTCTCCGACCTCGAACGTCCCTGGGAGCCCGTCGAGAGGCCTCCCAGCCTCTTCTCCGTCTCCGCCGACGAGCAGGTCAAGGTCCTCGCCGATCGCTTCCAGCGCCCCGGCGGGTTCGACCTGTGGACCGAGAGGGACGGGCCGGAGCTGTTTCGGACCATGGAGGACTTGCCGTCGGCGAGGTTTTTCCCCAAGGGAGTGGTGCATAGTGTGAGGCCGTATAGGAGGATCGGGTCCGAGGAGTTGGAGGAGGGTTTTGGAGGTGTGAGGGAGTTGGTGGATGGGCTTAAGGAGAGCTCGAATCGGCAAGGTTTGAATTCTAGAACTTATAATGGTAAATTGAGGAGGAAAGGGAAGGGGAGTAGAGGAAATGCAGATGTTTCGGCTGAGTTGAATTCCGAGGGAGGTGATGTTGATAGGAAACAGAGAGGACAGGGTAATGTGGTGCGCGGTGGCGAAAATGGGGGTGTTAGGAGAAATGGTGGTTCGGAGTCTGATAGGAGGTCTTCGGGTAGGTATAATTTGAGAGGAGGCGGTGTTGAGAGGAGACAGAGAGGACAGGGTGTGGTGCAGAGTCTGAAGTGTTTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

31.57

Weight (kDa)

10.71

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
AasI GACNNNNNNGTC 1 cut(s) 329
Acc16I TGCGCA 1 cut(s) 230
Acc36I ACCTGC 1 cut(s) 319
AccII CGCG 3 cut(s) 207, 237, 705
AclWI GGATC 1 cut(s) 491
AcsI RAATTY 2 cut(s) 571, 649
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 291
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 2 cut(s) 571, 649
AhdI GACNNNNNGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 4 cut(s) 184, 244, 403, 552
AluI AGCT 4 cut(s) 184, 244, 403, 552
Alw21I GWGCWC 2 cut(s) 246, 554
Alw26I GTCTC 4 cut(s) 142, 262, 319, 796
AlwI GGATC 1 cut(s) 491
AlwNI CAGNNNCTG 1 cut(s) 832
AoxI GGCC 7 cut(s) 112, 165, 192, 249, 293, 395, 470
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 2 cut(s) 571, 649
AspLEI GCGC 7 cut(s) 159, 213, 231, 237, 239, 360, 705
AspS9I GGNCC 7 cut(s) 113, 193, 337, 381, 395, 411, 489
AsuC2I CCSGG 2 cut(s) 129, 363
AsuHPI GGTGA 2 cut(s) 193, 674
AvaII GGWCC 4 cut(s) 337, 381, 411, 489
BanII GRGCYC 3 cut(s) 246, 285, 554
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 2 cut(s) 246, 554
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 530
BceAI ACGGC 3 cut(s) 239, 412, 457
BcgI CGANNNNNNTGC 2 cut(s) 618, 652
BciT130I CCWGG 1 cut(s) 277
BcnI CCSGG 2 cut(s) 129, 363
BcoDI GTCTC 4 cut(s) 142, 262, 319, 796
BfaI CTAG 2 cut(s) 29, 576
BfoI RGCGCY 2 cut(s) 214, 361
BfrI CTTAAG 1 cut(s) 542
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 5 cut(s) 109, 112, 133, 182, 252
BlsI GCNGC 5 cut(s) 110, 113, 134, 183, 253
Bme1390I CCNGG 3 cut(s) 129, 277, 363
Bme18I GGWCC 4 cut(s) 337, 381, 411, 489
BmeRI GACNNNNNGTC 1 cut(s) 427
BmgT120I GGNCC 7 cut(s) 113, 193, 337, 381, 395, 411, 489
BmiI GGNNCC 3 cut(s) 115, 282, 490
BmrFI CCNGG 3 cut(s) 129, 277, 363
BmsI GCATC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 753
BpuEI CTTGAG 2 cut(s) 173, 230
BpuMI CCSGG 2 cut(s) 129, 363
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 8 cut(s) 127, 275, 276, 361, 414, 447, 492, 654
BsaXI ACNNNNNCTCC 6 cut(s) 651, 681, 721, 751, 777, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 8 cut(s) 127, 275, 276, 361, 414, 447, 492, 654
BseGI GGATG 2 cut(s) 96, 541
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 633
BsePI GCGCGC 1 cut(s) 235
BseRI GAGGAG 7 cut(s) 50, 176, 509, 518, 613, 798, 814
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 845
Bsh1236I CGCG 3 cut(s) 207, 237, 705
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 7 cut(s) 114, 167, 194, 251, 295, 397, 472
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 2 cut(s) 246, 554
BsiSI CCGG 3 cut(s) 129, 363, 398
BslFI GGGAC 2 cut(s) 258, 404
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 4 cut(s) 142, 262, 319, 796
BsmBI CGTCTC 3 cut(s) 142, 262, 319
BsmFI GGGAC 2 cut(s) 258, 404
BsnI GGCC 7 cut(s) 114, 167, 194, 251, 295, 397, 472
Bsp1286I GDGCHC 3 cut(s) 246, 285, 554
Bsp143I GATC 2 cut(s) 346, 483
Bsp19I CCATGG 1 cut(s) 414
BspANI GGCC 7 cut(s) 114, 167, 194, 251, 295, 397, 472
BspCNI CTCAG 1 cut(s) 634
BspFNI CGCG 3 cut(s) 207, 237, 705
BspLI GGNNCC 3 cut(s) 115, 282, 490
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 1 cut(s) 491
BspTI CTTAAG 1 cut(s) 542
BssECI CCNNGG 8 cut(s) 127, 275, 276, 361, 414, 447, 492, 654
BssHII GCGCGC 1 cut(s) 235
BssMI GATC 2 cut(s) 346, 483
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 2 cut(s) 414, 447
Bst2UI CCWGG 1 cut(s) 277
Bst6I CTCTTC 2 cut(s) 47, 311
BstACI GRCGYC 1 cut(s) 135
BstAFI CTTAAG 1 cut(s) 542
BstC8I GCNNGC 6 cut(s) 161, 165, 196, 209, 233, 237
BstDEI CTNAG 1 cut(s) 642
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 96, 541
BstFNI CGCG 3 cut(s) 207, 237, 705
BstH2I RGCGCY 2 cut(s) 214, 361
BstHHI GCGC 7 cut(s) 159, 213, 231, 237, 239, 360, 705
BstKTI GATC 2 cut(s) 349, 486
BstMAI GTCTC 4 cut(s) 142, 262, 319, 796
BstMBI GATC 2 cut(s) 346, 483
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 6 cut(s) 108, 154, 173, 204, 241, 357
BstNI CCWGG 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 3 cut(s) 127, 275, 361
BstUI CGCG 3 cut(s) 207, 237, 705
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 753
BstXI CCANNNNNNTGG 1 cut(s) 454
BsuRI GGCC 7 cut(s) 114, 167, 194, 251, 295, 397, 472
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 96, 541
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 155
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 6 cut(s) 161, 165, 196, 209, 233, 237
CaiI CAGNNNCTG 1 cut(s) 832
CfoI GCGC 7 cut(s) 159, 213, 231, 237, 239, 360, 705
Cfr13I GGNCC 7 cut(s) 113, 193, 337, 381, 395, 411, 489
CseI GACGC 1 cut(s) 124
CviAII CATG 3 cut(s) 103, 160, 415
DdeI CTNAG 1 cut(s) 642
DpnI GATC 2 cut(s) 348, 485
DpnII GATC 2 cut(s) 346, 483
DrdI GACNNNNNNGTC 1 cut(s) 329
DriI GACNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 329
Eam1104I CTCTTC 2 cut(s) 47, 311
Eam1105I GACNNNNNGTC 1 cut(s) 427
EarI CTCTTC 2 cut(s) 47, 311
EciI GGCGGA 1 cut(s) 307
Ecl136II GAGCTC 2 cut(s) 244, 552
Eco130I CCWWGG 2 cut(s) 414, 447
Eco147I AGGCCT 1 cut(s) 295
Eco24I GRGCYC 3 cut(s) 246, 285, 554
Eco47I GGWCC 4 cut(s) 337, 381, 411, 489
Eco53kI GAGCTC 2 cut(s) 244, 552
EcoICRI GAGCTC 2 cut(s) 244, 552
EcoO109I RGGNCCY 1 cut(s) 337
EcoRI GAATTC 2 cut(s) 571, 649
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 2 cut(s) 414, 447
EcoT38I GRGCYC 3 cut(s) 246, 285, 554
ErhI CCWWGG 2 cut(s) 414, 447
Esp3I CGTCTC 3 cut(s) 142, 262, 319
FaeI CATG 3 cut(s) 106, 163, 418
FaiI YATR 8 cut(s) 104, 161, 416, 462, 477, 585, 774, 847
FaqI GGGAC 2 cut(s) 258, 404
FatI CATG 3 cut(s) 102, 159, 414
FauI CCCGC 3 cut(s) 203, 212, 359
Fnu4HI GCNGC 5 cut(s) 109, 112, 133, 182, 252
FokI GGATG 2 cut(s) 83, 548
FriOI GRGCYC 3 cut(s) 246, 285, 554
Fsp4HI GCNGC 5 cut(s) 109, 112, 133, 182, 252
FspBI CTAG 2 cut(s) 29, 576
FspI TGCGCA 1 cut(s) 230
GlaI GCGC 7 cut(s) 158, 212, 230, 236, 238, 359, 704
GluI GCNGC 5 cut(s) 109, 112, 133, 182, 252
GsaI CCCAGC 1 cut(s) 303
HaeII RGCGCY 2 cut(s) 214, 361
HaeIII GGCC 7 cut(s) 114, 167, 194, 251, 295, 397, 472
HapII CCGG 3 cut(s) 129, 363, 398
HgaI GACGC 1 cut(s) 124
HhaI GCGC 7 cut(s) 159, 213, 231, 237, 239, 360, 705
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 3 cut(s) 106, 163, 418
Hin6I GCGC 7 cut(s) 157, 211, 229, 235, 237, 358, 703
HinP1I GCGC 7 cut(s) 157, 211, 229, 235, 237, 358, 703
HinfI GANTC 3 cut(s) 556, 746, 829
HpaII CCGG 3 cut(s) 129, 363, 398
HphI GGTGA 2 cut(s) 193, 674
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 7 cut(s) 262, 411, 493, 655, 745, 751, 834
Hpy188III TCNNGA 2 cut(s) 289, 576
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 3 cut(s) 290, 326, 433
HpyAV CCTTC 3 cut(s) 25, 133, 604
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 4 cut(s) 163, 460, 629, 826
HpyF10VI GCNNNNNNNGC 6 cut(s) 108, 154, 173, 204, 241, 357
HpyF3I CTNAG 1 cut(s) 642
HpySE526I ACGT 1 cut(s) 271
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 3 cut(s) 106, 163, 418
HspAI GCGC 7 cut(s) 157, 211, 229, 235, 237, 358, 703
Kzo9I GATC 2 cut(s) 346, 483
LmnI GCTCC 3 cut(s) 189, 280, 400
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 216
MaeI CTAG 2 cut(s) 29, 576
MaeII ACGT 1 cut(s) 271
MalI GATC 2 cut(s) 348, 485
MboI GATC 2 cut(s) 346, 483
MboII GAAGA 3 cut(s) 34, 298, 753
MhlI GDGCHC 3 cut(s) 246, 285, 554
MluCI AATT 4 cut(s) 571, 593, 649, 775
MlyI GAGTC 2 cut(s) 755, 838
MmeI TCCRAC 2 cut(s) 285, 480
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 3 cut(s) 129, 363, 398
MspR9I CCNGG 3 cut(s) 129, 277, 363
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 3 cut(s) 207, 237, 705
MwoI GCNNNNNNNGC 6 cut(s) 108, 154, 173, 204, 241, 357
NciI CCSGG 2 cut(s) 129, 363
NcoI CCATGG 1 cut(s) 414
NdeII GATC 2 cut(s) 346, 483
NlaIII CATG 3 cut(s) 106, 163, 418
NlaIV GGNNCC 3 cut(s) 115, 282, 490
NmeAIII GCCGAG 1 cut(s) 265
NsbI TGCGCA 1 cut(s) 230
NspI RCATGY 1 cut(s) 163
PaeI GCATGC 1 cut(s) 163
PasI CCCWGGG 1 cut(s) 276
PauI GCGCGC 1 cut(s) 235
PceI AGGCCT 1 cut(s) 295
PfeI GAWTC 1 cut(s) 556
PkrI GCNGC 5 cut(s) 110, 113, 134, 183, 253
Ple19I CGATCG 1 cut(s) 349
PleI GAGTC 2 cut(s) 754, 837
PpsI GAGTC 2 cut(s) 754, 837
PpuMI RGGWCCY 1 cut(s) 337
PsiI TTATAA 1 cut(s) 585
Psp124BI GAGCTC 2 cut(s) 246, 554
Psp5II RGGWCCY 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 115, 282, 490
PspPI GGNCC 7 cut(s) 113, 193, 337, 381, 395, 411, 489
PspPPI RGGWCCY 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 832
PteI GCGCGC 1 cut(s) 235
PvuI CGATCG 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 2 cut(s) 246, 554
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 5 cut(s) 109, 112, 133, 182, 252
Sau3AI GATC 2 cut(s) 346, 483
Sau96I GGNCC 7 cut(s) 113, 193, 337, 381, 395, 411, 489
SchI GAGTC 2 cut(s) 755, 838
ScrFI CCNGG 3 cut(s) 129, 277, 363
SduI GDGCHC 3 cut(s) 246, 285, 554
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 4 cut(s) 337, 381, 411, 489
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 3 cut(s) 188, 245, 542
SmoI CTYRAG 3 cut(s) 188, 245, 542
SphI GCATGC 1 cut(s) 163
Sse9I AATT 4 cut(s) 571, 593, 649, 775
SseBI AGGCCT 1 cut(s) 295
SspMI CTAG 2 cut(s) 29, 576
SstI GAGCTC 2 cut(s) 246, 554
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 3 cut(s) 127, 275, 361
StyI CCWWGG 2 cut(s) 414, 447
TaiI ACGT 1 cut(s) 274
TaqI TCGA 4 cut(s) 267, 288, 372, 554
TaqII GACCGA 1 cut(s) 398
TasI AATT 4 cut(s) 571, 593, 649, 775
TauI GCSGC 4 cut(s) 111, 114, 135, 254
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 1 cut(s) 155
TseI GCWGC 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 1 cut(s) 155
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 4 cut(s) 337, 381, 411, 489
XapI RAATTY 2 cut(s) 571, 649
XbaI TCTAGA 1 cut(s) 575
XceI RCATGY 1 cut(s) 163
XspI CTAG 2 cut(s) 29, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.