Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005832

Physical Location & Seq

Genomic Coordinates Reverse (-)

22695585 .. 22696556

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1138600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCAGCGCCTCTCGTTCTCCAATGCCTTAACGTCCCCAACCCCTCTCTTCCTCCACACGGAGCTCTCCCACCTCTCCCTCCAATCCCTAACTCTAACACCCAAACCCATGATAATCCGGATGGGCGGCGGGCCCAGAACCTTCCCCGGCGGCGTATCCAAGTGGCAGTGGAAGCGCATGCAGGCGAAAAAAGCCAAGCAGCTCCTCAAGGCGCGGCTCTGCCGCGAGCGCCAAATCTACGAGATGCGAAAGAGGGCCGAGCTCAAAGCCGCCGTGTCCGAGCTTGAGCGGCCGTGGGAGGTTGTCGAGAAAGCTCCGAACTTGTTTTCTGTCAACGCCGACGAGCAAGTCAAGGTCTTGGCTGATAGGTTTCAGAAGCCTGGTGGATTCGATTTGTGGACGGAGAGGGACGGCCCGCAGCTGTTTCATACCATGGAGGACTTACCCTCCGCGAGGTTTTTCCCCAAAGGGGTTGTTCATAGTGTGAGGCCGTATAAAAGGATTTCTGGGCCGGAGGAATTGGAGAGTTTGGAGCTTGAAGATGGAGGATTTGGAGGAGCTGAGGAATTGGGAGATGGGTTTAAGGGTAAGGGGAAATTGGGAAGTGGGTCGTTCGATTCAGAGGAATCAGATGGGGAGGGTTTGAATCTGAAACATGCTCTGGAATCGTTGAGTGTGAATGGCCAAAGTGGGAAGAAGTACGATGGCAGAGTGGTGAAGAGAGGGAATAGGAGAAATTCTAAGTCTTCAGTTGGGTTTGATAATGCGGAAGCCGGTTTTGATAGGAAACAGAGAGGACCGAGTCCCACAATGCGCGGTGCAGAAGCTGGTTCTGATAGGAAACGGAGAGGGCAGAGTCCAACAAGAAAGACTCGGAGTAGTAAGCGAAATGATTCAGGATCTGAAGTTTTTGATATGAGCTTGCAGCAAGATGGAAGCTATGAACTTAGAGAGCATAACGGCAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

36.04

Weight (kDa)

9.74

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37920
fragaria_vesca	FvH4_6g12760 FvH4_6g12760
malus_domestica	MD04G1138600.v1.1 MD12G1154300.v1.1
prunus_persica	Prupe.6G264200_v2.0.a1
pyrus_communis	pycom04g12680 pycom12g14670
rosa_chinensis	RchiOBHm_Chr2g0112341 RchiOBHm_Chr3g0464731 RchiOBHm_Chr4g0392921
rosa_laevigata	RLG00000024675
rosa_multiflora	Rmu_sc0002031.1_g000002 Rmu_sc0002549.1_g000019
rosa_roxburghii	Rroxscaffold_2G00085440 Rroxscaffold_6G00415450
rosa_rugosa	Rorug03G0073700
rosa_samantha	Rh2AG233000 Rh2CG237400 Rh2DG240600 Rh3BG136200 Rh3CG138800 Rh3DG137700 Rh4DG244800 Rh5DG414900 Rh6AG177700
rosa_wichuraiana	Rw0G012330 Rw3G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
AccBSI	CCGCTC	1 cut(s)	289
AccII	CGCG	4 cut(s)	214, 225, 452, 816
AccIII	TCCGGA	1 cut(s)	117
AclWI	GGATC	1 cut(s)	907
AcoI	YGGCCR	2 cut(s)	290, 682
AcsI	RAATTY	1 cut(s)	736
AcuI	CTGAAG	2 cut(s)	732, 924
AfaI	GTAC	1 cut(s)	701
AfiI	CCNNNNNNNGG	3 cut(s)	58, 453, 469
AgsI	TTSAA	2 cut(s)	539, 646
AjnI	CCWGG	1 cut(s)	379
Alw21I	GWGCWC	2 cut(s)	66, 264
AlwI	GGATC	1 cut(s)	907
AlwNI	CAGNNNCTG	2 cut(s)	827, 902
Aor13HI	TCCGGA	1 cut(s)	117
AoxI	GGCC	7 cut(s)	131, 255, 290, 412, 488, 509, 682
ApaI	GGGCCC	1 cut(s)	135
ApeKI	GCWGC	4 cut(s)	4, 199, 418, 925
ApoI	RAATTY	1 cut(s)	736
Asp700I	GAANNNNTTC	1 cut(s)	892
AspLEI	GCGC	5 cut(s)	9, 177, 214, 231, 816
AspS9I	GGNCC	6 cut(s)	131, 132, 255, 413, 509, 797
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	727
AvaII	GGWCC	1 cut(s)	797
BaeGI	GKGCMC	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	684
BanII	GRGCYC	3 cut(s)	66, 135, 264
BbsI	GAAGAC	1 cut(s)	738
Bbv12I	GWGCWC	2 cut(s)	66, 264
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	4 cut(s)	16, 211, 430, 937
BccI	CCATC	6 cut(s)	115, 536, 569, 626, 698, 926
BceAI	ACGGC	4 cut(s)	257, 277, 427, 475
BciT130I	CCWGG	1 cut(s)	381
BciVI	GTATCC	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	147
BfoI	RGCGCY	2 cut(s)	10, 232
BfuI	GTATCC	1 cut(s)	166
Bme1390I	CCNGG	2 cut(s)	147, 381
Bme18I	GGWCC	1 cut(s)	797
BmgT120I	GGNCC	6 cut(s)	131, 132, 255, 413, 509, 797
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	147, 381
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	738
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	191, 305
BpuMI	CCSGG	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	145, 293, 432
BsaWI	WCCGGW	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 453, 469
Bse118I	RCCGGY	1 cut(s)	773
BseAI	TCCGGA	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	145, 293, 432
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	3 cut(s)	58, 453, 469
BseMII	CTCAG	1 cut(s)	552
BseRI	GAGGAG	2 cut(s)	194, 570
BseSI	GKGCMC	1 cut(s)	135
BseX3I	CGGCCG	1 cut(s)	290
BseXI	GCAGC	4 cut(s)	16, 211, 430, 937
BsgI	GTGCAG	1 cut(s)	840
Bsh1236I	CGCG	4 cut(s)	214, 225, 452, 816
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	7 cut(s)	133, 257, 292, 414, 490, 511, 684
BsiEI	CGRYCG	1 cut(s)	293
BsiHKAI	GWGCWC	2 cut(s)	66, 264
BsiSI	CCGG	4 cut(s)	118, 147, 512, 774
BslFI	GGGAC	3 cut(s)	19, 422, 789
BslI	CCNNNNNNNGG	3 cut(s)	58, 453, 469
BsmFI	GGGAC	3 cut(s)	19, 422, 789
BsnI	GGCC	7 cut(s)	133, 257, 292, 414, 490, 511, 684
Bsp120I	GGGCCC	1 cut(s)	131
Bsp1286I	GDGCHC	3 cut(s)	66, 135, 264
Bsp13I	TCCGGA	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	899
Bsp19I	CCATGG	1 cut(s)	432
BspANI	GGCC	7 cut(s)	133, 257, 292, 414, 490, 511, 684
BspCNI	CTCAG	1 cut(s)	553
BspEI	TCCGGA	1 cut(s)	117
BspFNI	CGCG	4 cut(s)	214, 225, 452, 816
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	907
BsrBI	CCGCTC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	773
BssAI	RCCGGY	1 cut(s)	773
BssECI	CCNNGG	3 cut(s)	145, 293, 432
BssMI	GATC	1 cut(s)	899
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	381
Bst6I	CTCTTC	2 cut(s)	53, 713
BstC8I	GCNNGC	7 cut(s)	131, 179, 183, 227, 416, 923, 965
BstDEI	CTNAG	3 cut(s)	561, 741, 947
BstDSI	CCRYGG	2 cut(s)	293, 432
BstENI	CCTNNNNNAGG	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	4 cut(s)	214, 225, 452, 816
BstH2I	RGCGCY	2 cut(s)	10, 232
BstHHI	GCGC	5 cut(s)	9, 177, 214, 231, 816
BstKTI	GATC	1 cut(s)	902
BstMBI	GATC	1 cut(s)	899
BstMCI	CGRYCG	1 cut(s)	293
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 191, 228, 289
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	2 cut(s)	181, 659
BstSCI	CCNGG	2 cut(s)	145, 379
BstSLI	GKGCMC	1 cut(s)	135
BstUI	CGCG	4 cut(s)	214, 225, 452, 816
BstV1I	GCAGC	4 cut(s)	16, 211, 430, 937
BstV2I	GAAGAC	1 cut(s)	738
BstX2I	RGATCY	1 cut(s)	899
BstYI	RGATCY	1 cut(s)	899
BstZI	CGGCCG	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	7 cut(s)	133, 257, 292, 414, 490, 511, 684
BtgI	CCRYGG	2 cut(s)	293, 432
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	7 cut(s)	131, 179, 183, 227, 416, 923, 965
CaiI	CAGNNNCTG	2 cut(s)	827, 902
CfoI	GCGC	5 cut(s)	9, 177, 214, 231, 816
Cfr10I	RCCGGY	1 cut(s)	773
Cfr13I	GGNCC	6 cut(s)	131, 132, 255, 413, 509, 797
Csp6I	GTAC	1 cut(s)	700
CviAII	CATG	5 cut(s)	109, 178, 433, 656, 969
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	3 cut(s)	561, 741, 947
DpnI	GATC	1 cut(s)	901
DpnII	GATC	1 cut(s)	899
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	2 cut(s)	290, 682
EagI	CGGCCG	1 cut(s)	290
Eam1104I	CTCTTC	2 cut(s)	53, 713
EarI	CTCTTC	2 cut(s)	53, 713
Ecl136II	GAGCTC	2 cut(s)	64, 262
EclXI	CGGCCG	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	3 cut(s)	66, 135, 264
Eco47I	GGWCC	1 cut(s)	797
Eco52I	CGGCCG	1 cut(s)	290
Eco53kI	GAGCTC	2 cut(s)	64, 262
Eco57I	CTGAAG	2 cut(s)	732, 924
EcoICRI	GAGCTC	2 cut(s)	64, 262
EcoNI	CCTNNNNNAGG	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	3 cut(s)	66, 135, 264
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	5 cut(s)	112, 181, 436, 659, 972
FaqI	GGGAC	3 cut(s)	19, 422, 789
FatI	CATG	5 cut(s)	108, 177, 432, 655, 968
FauI	CCCGC	2 cut(s)	122, 423
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	3 cut(s)	66, 135, 264
GlaI	GCGC	5 cut(s)	8, 176, 213, 230, 815
HaeII	RGCGCY	2 cut(s)	10, 232
HaeIII	GGCC	7 cut(s)	133, 257, 292, 414, 490, 511, 684
HapII	CCGG	4 cut(s)	118, 147, 512, 774
HhaI	GCGC	5 cut(s)	9, 177, 214, 231, 816
Hin1II	CATG	5 cut(s)	112, 181, 436, 659, 972
Hin6I	GCGC	5 cut(s)	7, 175, 212, 229, 814
HinP1I	GCGC	5 cut(s)	7, 175, 212, 229, 814
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	9 cut(s)	387, 617, 626, 646, 665, 802, 856, 871, 893
HpaII	CCGG	4 cut(s)	118, 147, 512, 774
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	2 cut(s)	334, 399
Hpy188I	TCNGA	9 cut(s)	280, 318, 375, 622, 631, 651, 835, 876, 904
Hpy188III	TCNNGA	4 cut(s)	118, 307, 662, 897
Hpy8I	GTNNAC	2 cut(s)	334, 399
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	4 cut(s)	4, 181, 821, 925
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 191, 228, 289
HpyF3I	CTNAG	3 cut(s)	561, 741, 947
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	5 cut(s)	112, 181, 436, 659, 972
HspAI	GCGC	5 cut(s)	7, 175, 212, 229, 814
Kpn2I	TCCGGA	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	899
LmnI	GCTCC	5 cut(s)	61, 207, 319, 532, 557
Lsp1109I	GCAGC	4 cut(s)	16, 211, 430, 937
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	1 cut(s)	32
MalI	GATC	1 cut(s)	901
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	1 cut(s)	899
MboII	GAAGA	5 cut(s)	40, 551, 706, 730, 738
MflI	RGATCY	1 cut(s)	899
MhlI	GDGCHC	3 cut(s)	66, 135, 264
MlsI	TGGCCA	1 cut(s)	684
MluCI	AATT	4 cut(s)	518, 566, 596, 736
MluNI	TGGCCA	1 cut(s)	684
MlyI	GAGTC	3 cut(s)	811, 865, 865
MmeI	TCCRAC	1 cut(s)	884
Mox20I	TGGCCA	1 cut(s)	684
MroI	TCCGGA	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	892
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	2 cut(s)	29, 582
Msp20I	TGGCCA	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	4 cut(s)	118, 147, 512, 774
MspR9I	CCNGG	2 cut(s)	147, 381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	4 cut(s)	214, 225, 452, 816
MwoI	GCNNNNNNNGC	4 cut(s)	172, 191, 228, 289
NciI	CCSGG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	1 cut(s)	899
NlaIII	CATG	5 cut(s)	112, 181, 436, 659, 972
NlaIV	GGNNCC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	283
NspI	RCATGY	2 cut(s)	181, 659
PaeI	GCATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	892
PfeI	GAWTC	6 cut(s)	387, 617, 626, 646, 665, 893
PflFI	GACNNNGTC	1 cut(s)	801
PleI	GAGTC	3 cut(s)	810, 864, 865
PpsI	GAGTC	3 cut(s)	810, 864, 865
Psp124BI	GAGCTC	2 cut(s)	66, 264
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	133
PspOMI	GGGCCC	1 cut(s)	131
PspPI	GGNCC	6 cut(s)	131, 132, 255, 413, 509, 797
PstNI	CAGNNNCTG	2 cut(s)	827, 902
PsuI	RGATCY	1 cut(s)	899
PsyI	GACNNNGTC	1 cut(s)	801
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
SacI	GAGCTC	2 cut(s)	66, 264
SaqAI	TTAA	2 cut(s)	29, 582
Sau3AI	GATC	1 cut(s)	899
Sau96I	GGNCC	6 cut(s)	131, 132, 255, 413, 509, 797
SchI	GAGTC	3 cut(s)	811, 865, 865
ScrFI	CCNGG	2 cut(s)	147, 381
SduI	GDGCHC	3 cut(s)	66, 135, 264
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	797
SmlI	CTYRAG	2 cut(s)	206, 284
SmoI	CTYRAG	2 cut(s)	206, 284
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	4 cut(s)	518, 566, 596, 736
SstI	GAGCTC	2 cut(s)	66, 264
StyD4I	CCNGG	2 cut(s)	145, 379
StyI	CCWWGG	1 cut(s)	432
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	3 cut(s)	306, 390, 615
TaqII	GACCGA	1 cut(s)	814
TasI	AATT	4 cut(s)	518, 566, 596, 736
TauI	GCSGC	6 cut(s)	129, 153, 217, 225, 272, 292
TfiI	GAWTC	6 cut(s)	387, 617, 626, 646, 665, 893
Tru1I	TTAA	2 cut(s)	29, 582
Tru9I	TTAA	2 cut(s)	29, 582
TscAI	CASTG	1 cut(s)	173
TseI	GCWGC	4 cut(s)	4, 199, 418, 925
TspDTI	ATGAA	3 cut(s)	416, 467, 957
TspGWI	ACGGA	3 cut(s)	74, 416, 859
TspRI	CASTG	1 cut(s)	173
Tth111I	GACNNNGTC	1 cut(s)	801
VpaK11BI	GGWCC	1 cut(s)	797
XagI	CCTNNNNNAGG	1 cut(s)	451
XapI	RAATTY	1 cut(s)	736
XceI	RCATGY	2 cut(s)	181, 659
XmnI	GAANNNNTTC	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.