Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005832

Physical Location & Seq

Genomic Coordinates Forward (+)

24292083 .. 24292586

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCACTCTTCCATGCCTTTCTCACACACCAATCCCTCTCCTTCTCCAAATACCTTACCTCCCCAACCCCTCTCTTCCTCCACACAAACCTCTCCCTCTCCCTTAAACCCTTAACCCTAAAGCCCACATTCATCCGAATGGGCGGCGTGCCCAGAACCTTCCCCGGCGGTGTATACAAGTGGCAGTGGAAGCGCATGCAGGCCAAGAAAGCCAAGCAGCTCCTCAAGGCCCGCCTCTGCCATGAGCACCAAAGCTACGAGATACAAGGCAAGCCGAGCTTAAAGCCGCCGTGTCGGAGCTCGAGGGAGACCGTCGAGAAGCCTCCCAATTTGTTCTCCATCAGCGCTGATGAGCAGGTTAAGGTCTTGGCCGATCAGTTCCAGAGGCCGGGAGGGTTTGACTTGTGGACCGAGAGGAATGGGCCAGAGCTATTTCGGACCATGAAGGACCTACCGTCGGCGAGGTTTTATCCCAAGGGGGTTGTGCATAGTGAGGCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

19.14

Weight (kDa)

10.05

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37920
fragaria_vesca	FvH4_6g12760 FvH4_6g12760
malus_domestica	MD04G1138600.v1.1 MD12G1154300.v1.1
prunus_persica	Prupe.6G264200_v2.0.a1
pyrus_communis	pycom04g12680 pycom12g14670
rosa_chinensis	RchiOBHm_Chr2g0112341 RchiOBHm_Chr3g0464731 RchiOBHm_Chr4g0392921
rosa_laevigata	RLG00000024675
rosa_multiflora	Rmu_sc0002031.1_g000002 Rmu_sc0002549.1_g000019
rosa_roxburghii	Rroxscaffold_2G00085440 Rroxscaffold_6G00415450
rosa_rugosa	Rorug03G0073700
rosa_samantha	Rh2AG233000 Rh2CG237400 Rh2DG240600 Rh3BG136200 Rh3CG138800 Rh3DG137700 Rh4DG244800 Rh5DG414900 Rh6AG177700
rosa_wichuraiana	Rw0G012330 Rw3G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	4 cut(s)	144, 168, 232, 287
AcoI	YGGCCR	1 cut(s)	369
AfeI	AGCGCT	1 cut(s)	346
AfiI	CCNNNNNNNGG	2 cut(s)	388, 457
AhdI	GACNNNNNGTC	1 cut(s)	454
AluBI	AGCT	5 cut(s)	220, 255, 279, 300, 430
AluI	AGCT	5 cut(s)	220, 255, 279, 300, 430
Alw21I	GWGCWC	2 cut(s)	249, 302
Alw26I	GTCTC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	301
Aor51HI	AGCGCT	1 cut(s)	346
AoxI	GGCC	6 cut(s)	201, 228, 369, 386, 422, 495
ApeKI	GCWGC	1 cut(s)	217
AspLEI	GCGC	2 cut(s)	195, 347
AspS9I	GGNCC	5 cut(s)	229, 408, 422, 438, 448
AsuC2I	CCSGG	2 cut(s)	165, 390
AvaI	CYCGRG	1 cut(s)	301
AvaII	GGWCC	3 cut(s)	408, 438, 448
BaeGI	GKGCMC	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	249, 302
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	347
BceAI	ACGGC	1 cut(s)	274
BcnI	CCSGG	2 cut(s)	165, 390
BcoDI	GTCTC	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	3 cut(s)	145, 218, 287
BlsI	GCNGC	3 cut(s)	146, 219, 288
Bme1390I	CCNGG	2 cut(s)	165, 390
Bme18I	GGWCC	3 cut(s)	408, 438, 448
BmeRI	GACNNNNNGTC	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	301
BmgT120I	GGNCC	5 cut(s)	229, 408, 422, 438, 448
BmrFI	CCNGG	2 cut(s)	165, 390
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	2 cut(s)	165, 390
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	163, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 457
BseDI	CCNNGG	2 cut(s)	163, 474
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	388, 457
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	6 cut(s)	203, 230, 371, 388, 424, 497
BsiHKAI	GWGCWC	2 cut(s)	249, 302
BsiHKCI	CYCGRG	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	165, 389
BslI	CCNNNNNNNGG	2 cut(s)	388, 457
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	6 cut(s)	203, 230, 371, 388, 424, 497
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	301
Bsp1286I	GDGCHC	3 cut(s)	153, 249, 302
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	4 cut(s)	144, 168, 232, 287
BspANI	GGCC	6 cut(s)	203, 230, 371, 388, 424, 497
BspMI	ACCTGC	1 cut(s)	346
BspTNI	GGTCTC	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	163, 474
BssMI	GATC	1 cut(s)	373
BssNAI	GTATAC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	474
Bst1107I	GTATAC	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	313, 456
Bst6I	CTCTTC	2 cut(s)	14, 80
BstC8I	GCNNGC	5 cut(s)	149, 197, 201, 232, 272
BstF5I	GGATG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	2 cut(s)	195, 347
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 209, 276
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	163, 388
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	229
BstZ17I	GTATAC	1 cut(s)	175
BsuRI	GGCC	6 cut(s)	203, 230, 371, 388, 424, 497
BtsCI	GGATG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	191
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	5 cut(s)	149, 197, 201, 232, 272
CfoI	GCGC	2 cut(s)	195, 347
Cfr13I	GGNCC	5 cut(s)	229, 408, 422, 438, 448
CviAII	CATG	4 cut(s)	14, 196, 242, 442
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
DriI	GACNNNNNGTC	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	14, 80
Eam1105I	GACNNNNNGTC	1 cut(s)	454
EarI	CTCTTC	2 cut(s)	14, 80
Ecl136II	GAGCTC	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	3 cut(s)	408, 438, 448
Eco47III	AGCGCT	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	4 cut(s)	17, 199, 245, 445
FaiI	YATR	8 cut(s)	15, 175, 197, 243, 443, 489, 500, 502
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	4 cut(s)	13, 195, 241, 441
FauI	CCCGC	1 cut(s)	239
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	145, 218, 287
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	145, 218, 287
GlaI	GCGC	2 cut(s)	194, 346
GluI	GCNGC	3 cut(s)	145, 218, 287
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	6 cut(s)	203, 230, 371, 388, 424, 497
HapII	CCGG	2 cut(s)	165, 389
HhaI	GCGC	2 cut(s)	195, 347
Hin1II	CATG	4 cut(s)	17, 199, 245, 445
Hin6I	GCGC	2 cut(s)	193, 345
HinP1I	GCGC	2 cut(s)	193, 345
HpaII	CCGG	2 cut(s)	165, 389
Hpy166II	GTNNAC	2 cut(s)	175, 408
Hpy188I	TCNGA	3 cut(s)	137, 297, 438
Hpy188III	TCNNGA	2 cut(s)	316, 382
Hpy8I	GTNNAC	2 cut(s)	175, 408
Hpy99I	CGWCG	2 cut(s)	317, 460
HpyAV	CCTTC	3 cut(s)	52, 169, 439
HpyCH4III	ACNGT	2 cut(s)	313, 456
HpyCH4V	TGCA	2 cut(s)	199, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 209, 276
Hsp92II	CATG	4 cut(s)	17, 199, 245, 445
HspAI	GCGC	2 cut(s)	193, 345
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	2 cut(s)	225, 297
LpnPI	CCDG	7 cut(s)	166, 178, 185, 341, 395, 402, 438
Lsp1109I	GCAGC	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	1 cut(s)	67
MhlI	GDGCHC	3 cut(s)	153, 249, 302
MluCI	AATT	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	275
MseI	TTAA	4 cut(s)	105, 113, 281, 360
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	2 cut(s)	165, 389
MspR9I	CCNGG	2 cut(s)	165, 390
MwoI	GCNNNNNNNGC	3 cut(s)	190, 209, 276
NciI	CCSGG	2 cut(s)	165, 390
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	4 cut(s)	17, 199, 245, 445
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	199
PaeI	GCATGC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	146, 219, 288
PpuMI	RGGWCCY	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	448
PspPI	GGNCC	5 cut(s)	229, 408, 422, 438, 448
PspPPI	RGGWCCY	1 cut(s)	448
PspXI	VCTCGAGB	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	302
SaqAI	TTAA	4 cut(s)	105, 113, 281, 360
SatI	GCNGC	3 cut(s)	145, 218, 287
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	5 cut(s)	229, 408, 422, 438, 448
ScrFI	CCNGG	2 cut(s)	165, 390
SduI	GDGCHC	3 cut(s)	153, 249, 302
Sfr274I	CTCGAG	1 cut(s)	301
SinI	GGWCC	3 cut(s)	408, 438, 448
SlaI	CTCGAG	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	224, 301
SmoI	CTYRAG	2 cut(s)	224, 301
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	4 cut(s)	144, 168, 232, 287
SstI	GAGCTC	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	163, 388
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	313, 456
TaqI	TCGA	2 cut(s)	302, 315
TaqII	GACCGA	1 cut(s)	425
TasI	AATT	1 cut(s)	328
TauI	GCSGC	2 cut(s)	147, 289
Tru1I	TTAA	4 cut(s)	105, 113, 281, 360
Tru9I	TTAA	4 cut(s)	105, 113, 281, 360
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	121, 458
TspRI	CASTG	1 cut(s)	191
VpaK11BI	GGWCC	3 cut(s)	408, 438, 448
XceI	RCATGY	1 cut(s)	199
XhoI	CTCGAG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.