Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005832

Physical Location & Seq

Genomic Coordinates Reverse (-)

23490325 .. 23491467

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1154300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCTAAGAAAGCCAACGGCCATAAACTTGAAACTCCACCCTCCACAGTGGCTCCGCTGCCCTCACTTCCCCCATCTTCTTCCTCCGTTCCAATCTCTGCCAACCCTAATTTCAGTTCTCCCAATTCCCCCAATTTCTCACTCAATTTTTAATTCGCTTCCCAAAATGCAGCCCCTCTCATTCTCCAACGCCTTGACGTCCCCAACCCCTCTCTTCCTCCACACGGAGCTCTCCCACCTTTCCCTCCCATCCCTAACCCTAACCCCCAAACCCATGATAATCCGGATGGGCGGCGGGCCCAGAACCTTCCCCGGAGGCGTATCCAAGTGGCAGTGGAAGCGCATGCAGGCCAAAAAAGCCAAGCAGCTCCTCAAGGCGCGGCTCTGCCGGGAGCGCCAAATATACGAGATGCGAAAGAGGGCCGAGCTCAAAGCTGCAGTGTCCGAGCTCGAGCGGCCGTGGGAGGTCGTGGAGAAAGCTCCGAACTTGTTCTCTGTCAGCGCAGACGAGCAAGTCAAGGTCTTGGCGGATAGGTTTCAGAAACCCGGTGGGTTCGATTTATGGACGGAGAGGGATGGCCCGCAGCTGTTTAACACCATGGAGGACTTGCCCTCTGCTAGGTTTTTCCCCAAAGGGGTTGTTCATAGTGTGAGGCCGTATAAAAGGATTTCTGAGCTGGAGGAATTGGAGGGTTTGGAGCTTGAAGATGGAGGATTTGGAGGAGCTGAGGAATTGGGTGATGGCTTTAAATTTAAGGGAAAATGGGGAAGTGCGTCATTGGATTTAGAGGACTCAGACGGAGGTTTGAATCTAAAACATTCTCTGGAATCGTTGAGTGTGAATGGCCAAGCTGCGAAGAAGTATAGTGGCAGAGTGGGGAAGAGGGAGAATAGGAGAAAATCTGAGTCTTCAGGTGGGTTTGAAAATGCAGAAGCTGGTTTTGATAGGAAACAGAGAGGACAGAGTCCCACAATGCCCGGTGTAGAAGCTGGTTCTGATAGAAAACAGAGAGGACAGAGTCTCACAATGCGCGGTGGAAAGACTCGGCGTAGTAGACGAAATGGTTCGGGGTCTGAAGTTTTTGATATGAGCTTGCAGCAAGATGGGAGCTATGAACTTAAAGTGCAAAATGGCAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

381

Amino Acids

42.45

Weight (kDa)

9.85

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37920
fragaria_vesca	FvH4_6g12760 FvH4_6g12760
malus_domestica	MD04G1138600.v1.1 MD12G1154300.v1.1
prunus_persica	Prupe.6G264200_v2.0.a1
pyrus_communis	pycom04g12680 pycom12g14670
rosa_chinensis	RchiOBHm_Chr2g0112341 RchiOBHm_Chr3g0464731 RchiOBHm_Chr4g0392921
rosa_laevigata	RLG00000024675
rosa_multiflora	Rmu_sc0002031.1_g000002 Rmu_sc0002549.1_g000019
rosa_roxburghii	Rroxscaffold_2G00085440 Rroxscaffold_6G00415450
rosa_rugosa	Rorug03G0073700
rosa_samantha	Rh2AG233000 Rh2CG237400 Rh2DG240600 Rh3BG136200 Rh3CG138800 Rh3DG137700 Rh4DG244800 Rh5DG414900 Rh6AG177700
rosa_wichuraiana	Rw0G012330 Rw3G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
AatII	GACGTC	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	454
AccI	GTMKAC	1 cut(s)	1054
AccII	CGCG	2 cut(s)	379, 1032
AccIII	TCCGGA	1 cut(s)	282
AciI	CCGC	8 cut(s)	55, 291, 294, 379, 454, 527, 581, 1032
AcoI	YGGCCR	3 cut(s)	18, 455, 844
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	2 cut(s)	894, 1095
AcyI	GRCGYC	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	223, 618, 634
AgsI	TTSAA	4 cut(s)	31, 704, 808, 923
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
Alw21I	GWGCWC	3 cut(s)	231, 429, 450
Alw26I	GTCTC	1 cut(s)	1025
AlwNI	CAGNNNCTG	1 cut(s)	935
Ama87I	CYCGRG	1 cut(s)	449
Aor13HI	TCCGGA	1 cut(s)	282
AoxI	GGCC	8 cut(s)	18, 296, 348, 420, 455, 577, 653, 844
ApaI	GGGCCC	1 cut(s)	300
ApeKI	GCWGC	7 cut(s)	57, 169, 364, 434, 583, 851, 1096
ApoI	RAATTY	1 cut(s)	749
Asp700I	GAANNNNTTC	2 cut(s)	488, 1063
AspLEI	GCGC	5 cut(s)	342, 379, 396, 503, 1032
AspS9I	GGNCC	4 cut(s)	296, 297, 420, 578
AsuC2I	CCSGG	4 cut(s)	312, 389, 546, 978
AsuHPI	GGTGA	1 cut(s)	749
AvaI	CYCGRG	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	846
BanII	GRGCYC	4 cut(s)	231, 300, 429, 450
BbsI	GAAGAC	1 cut(s)	900
Bbv12I	GWGCWC	3 cut(s)	231, 429, 450
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	7 cut(s)	44, 181, 376, 421, 595, 838, 1108
BccI	CCATC	7 cut(s)	81, 256, 280, 569, 701, 734, 1097
BceAI	ACGGC	3 cut(s)	33, 442, 640
BciVI	GTATCC	1 cut(s)	331
BcnI	CCSGG	4 cut(s)	312, 389, 546, 978
BcoDI	GTCTC	1 cut(s)	1025
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	331
Bme1390I	CCNGG	4 cut(s)	312, 389, 546, 978
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	4 cut(s)	296, 297, 420, 578
BmiI	GGNNCC	2 cut(s)	53, 298
BmrFI	CCNGG	4 cut(s)	312, 389, 546, 978
BmsI	GCATC	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	900
BpmI	CTGGAG	1 cut(s)	698
Bpu10I	CCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	356
BpuMI	CCSGG	4 cut(s)	312, 389, 546, 978
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	310, 458, 597
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 618, 634
BseAI	TCCGGA	1 cut(s)	282
BseDI	CCNNGG	3 cut(s)	310, 458, 597
BseGI	GGATG	3 cut(s)	248, 291, 580
BseLI	CCNNNNNNNGG	3 cut(s)	223, 618, 634
BseMII	CTCAG	4 cut(s)	663, 717, 807, 894
BseRI	GAGGAG	2 cut(s)	359, 735
BseSI	GKGCMC	1 cut(s)	300
BseX3I	CGGCCG	1 cut(s)	455
BseXI	GCAGC	7 cut(s)	44, 181, 376, 421, 595, 838, 1108
Bsh1236I	CGCG	2 cut(s)	379, 1032
Bsh1285I	CGRYCG	1 cut(s)	458
BshFI	GGCC	8 cut(s)	20, 298, 350, 422, 457, 579, 655, 846
BsiEI	CGRYCG	1 cut(s)	458
BsiHKAI	GWGCWC	3 cut(s)	231, 429, 450
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	5 cut(s)	283, 312, 388, 546, 978
BslFI	GGGAC	2 cut(s)	184, 951
BslI	CCNNNNNNNGG	3 cut(s)	223, 618, 634
BsmAI	GTCTC	1 cut(s)	1025
BsmFI	GGGAC	2 cut(s)	184, 951
BsnI	GGCC	8 cut(s)	20, 298, 350, 422, 457, 579, 655, 846
BsoBI	CYCGRG	1 cut(s)	449
Bsp120I	GGGCCC	1 cut(s)	296
Bsp1286I	GDGCHC	4 cut(s)	231, 300, 429, 450
Bsp13I	TCCGGA	1 cut(s)	282
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	8 cut(s)	55, 291, 294, 379, 454, 527, 581, 1032
BspANI	GGCC	8 cut(s)	20, 298, 350, 422, 457, 579, 655, 846
BspCNI	CTCAG	4 cut(s)	664, 718, 806, 895
BspEI	TCCGGA	1 cut(s)	282
BspFNI	CGCG	2 cut(s)	379, 1032
BspLI	GGNNCC	2 cut(s)	53, 298
BspMAI	CTGCAG	1 cut(s)	439
BsrBI	CCGCTC	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	310, 458, 597
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	597
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	218, 875
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	6 cut(s)	296, 344, 348, 581, 1094, 1136
BstDEI	CTNAG	5 cut(s)	5, 672, 726, 793, 903
BstDSI	CCRYGG	2 cut(s)	458, 597
BstENI	CCTNNNNNAGG	1 cut(s)	616
BstF5I	GGATG	3 cut(s)	248, 291, 580
BstFNI	CGCG	2 cut(s)	379, 1032
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	5 cut(s)	342, 379, 396, 503, 1032
BstMAI	GTCTC	1 cut(s)	1025
BstMCI	CGRYCG	1 cut(s)	458
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 337, 356, 393, 454
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	4 cut(s)	310, 387, 544, 976
BstSFI	CTRYAG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	2 cut(s)	379, 1032
BstV1I	GCAGC	7 cut(s)	44, 181, 376, 421, 595, 838, 1108
BstV2I	GAAGAC	1 cut(s)	900
BstZI	CGGCCG	1 cut(s)	455
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	8 cut(s)	20, 298, 350, 422, 457, 579, 655, 846
BtgI	CCRYGG	2 cut(s)	458, 597
BtsCI	GGATG	3 cut(s)	248, 291, 580
BtsI	GCAGTG	2 cut(s)	338, 444
BtsIMutI	CAGTG	3 cut(s)	53, 338, 444
Cac8I	GCNNGC	6 cut(s)	296, 344, 348, 581, 1094, 1136
CaiI	CAGNNNCTG	1 cut(s)	935
CfoI	GCGC	5 cut(s)	342, 379, 396, 503, 1032
Cfr13I	GGNCC	4 cut(s)	296, 297, 420, 578
CseI	GACGC	1 cut(s)	762
CviAII	CATG	4 cut(s)	274, 343, 598, 1140
DdeI	CTNAG	5 cut(s)	5, 672, 726, 793, 903
DraI	TTTAAA	1 cut(s)	748
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
EaeI	YGGCCR	3 cut(s)	18, 455, 844
EagI	CGGCCG	1 cut(s)	455
Eam1104I	CTCTTC	2 cut(s)	218, 875
EarI	CTCTTC	2 cut(s)	218, 875
EciI	GGCGGA	1 cut(s)	542
Ecl136II	GAGCTC	3 cut(s)	229, 427, 448
EclXI	CGGCCG	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	4 cut(s)	231, 300, 429, 450
Eco52I	CGGCCG	1 cut(s)	455
Eco53kI	GAGCTC	3 cut(s)	229, 427, 448
Eco57I	CTGAAG	2 cut(s)	894, 1095
Eco88I	CYCGRG	1 cut(s)	449
EcoICRI	GAGCTC	3 cut(s)	229, 427, 448
EcoNI	CCTNNNNNAGG	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	597
EcoT38I	GRGCYC	4 cut(s)	231, 300, 429, 450
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	4 cut(s)	277, 346, 601, 1143
FaqI	GGGAC	2 cut(s)	184, 951
FatI	CATG	4 cut(s)	273, 342, 597, 1139
FauI	CCCGC	2 cut(s)	287, 588
FblI	GTMKAC	1 cut(s)	1054
FokI	GGATG	3 cut(s)	235, 298, 587
FriOI	GRGCYC	4 cut(s)	231, 300, 429, 450
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	5 cut(s)	341, 378, 395, 502, 1031
GsuI	CTGGAG	1 cut(s)	698
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	8 cut(s)	20, 298, 350, 422, 457, 579, 655, 846
HapII	CCGG	5 cut(s)	283, 312, 388, 546, 978
HgaI	GACGC	1 cut(s)	762
HhaI	GCGC	5 cut(s)	342, 379, 396, 503, 1032
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	4 cut(s)	277, 346, 601, 1143
Hin6I	GCGC	5 cut(s)	340, 377, 394, 501, 1030
HinP1I	GCGC	5 cut(s)	340, 377, 394, 501, 1030
HinfI	GANTC	7 cut(s)	791, 808, 827, 905, 964, 1018, 1042
HpaII	CCGG	5 cut(s)	283, 312, 388, 546, 978
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	1 cut(s)	1055
Hpy188I	TCNGA	8 cut(s)	445, 483, 540, 673, 796, 904, 997, 1075
Hpy188III	TCNNGA	2 cut(s)	283, 824
Hpy8I	GTNNAC	1 cut(s)	1055
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	6 cut(s)	169, 346, 437, 929, 1096, 1126
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 337, 356, 393, 454
HpyF3I	CTNAG	5 cut(s)	5, 672, 726, 793, 903
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	4 cut(s)	277, 346, 601, 1143
HspAI	GCGC	5 cut(s)	340, 377, 394, 501, 1030
Kpn2I	TCCGGA	1 cut(s)	282
LmnI	GCTCC	8 cut(s)	57, 226, 372, 391, 484, 697, 722, 1107
Lsp1109I	GCAGC	7 cut(s)	44, 181, 376, 421, 595, 838, 1108
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	197
MbiI	CCGCTC	1 cut(s)	454
MboII	GAAGA	7 cut(s)	68, 71, 205, 716, 868, 892, 900
MhlI	GDGCHC	4 cut(s)	231, 300, 429, 450
MlsI	TGGCCA	1 cut(s)	846
MluCI	AATT	8 cut(s)	108, 123, 132, 144, 151, 683, 731, 749
MluNI	TGGCCA	1 cut(s)	846
MlyI	GAGTC	5 cut(s)	785, 914, 973, 1027, 1036
MmeI	TCCRAC	1 cut(s)	210
Mox20I	TGGCCA	1 cut(s)	846
MroI	TCCGGA	1 cut(s)	282
MroXI	GAANNNNTTC	2 cut(s)	488, 1063
MscI	TGGCCA	1 cut(s)	846
MseI	TTAA	5 cut(s)	150, 591, 747, 753, 1119
Msp20I	TGGCCA	1 cut(s)	846
MspA1I	CMGCKG	2 cut(s)	57, 586
MspI	CCGG	5 cut(s)	283, 312, 388, 546, 978
MspR9I	CCNGG	4 cut(s)	312, 389, 546, 978
MvnI	CGCG	2 cut(s)	379, 1032
MwoI	GCNNNNNNNGC	5 cut(s)	10, 337, 356, 393, 454
NciI	CCSGG	4 cut(s)	312, 389, 546, 978
NcoI	CCATGG	1 cut(s)	597
NlaIII	CATG	4 cut(s)	277, 346, 601, 1143
NlaIV	GGNNCC	2 cut(s)	53, 298
NmeAIII	GCCGAG	2 cut(s)	448, 1024
NspI	RCATGY	1 cut(s)	346
PaeI	GCATGC	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	449
PdmI	GAANNNNTTC	2 cut(s)	488, 1063
PfeI	GAWTC	2 cut(s)	808, 827
PflFI	GACNNNGTC	2 cut(s)	963, 1017
PleI	GAGTC	5 cut(s)	785, 913, 972, 1026, 1036
PpsI	GAGTC	5 cut(s)	785, 913, 972, 1026, 1036
Psp124BI	GAGCTC	3 cut(s)	231, 429, 450
PspN4I	GGNNCC	2 cut(s)	53, 298
PspOMI	GGGCCC	1 cut(s)	296
PspPI	GGNCC	4 cut(s)	296, 297, 420, 578
PspXI	VCTCGAGB	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	935
PsyI	GACNNNGTC	2 cut(s)	963, 1017
PvuII	CAGCTG	1 cut(s)	586
SacI	GAGCTC	3 cut(s)	231, 429, 450
SaqAI	TTAA	5 cut(s)	150, 591, 747, 753, 1119
Sau96I	GGNCC	4 cut(s)	296, 297, 420, 578
SchI	GAGTC	5 cut(s)	785, 914, 973, 1027, 1036
ScrFI	CCNGG	4 cut(s)	312, 389, 546, 978
SduI	GDGCHC	4 cut(s)	231, 300, 429, 450
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	449
SmlI	CTYRAG	2 cut(s)	371, 449
SmoI	CTYRAG	2 cut(s)	371, 449
SphI	GCATGC	1 cut(s)	346
Sse9I	AATT	8 cut(s)	108, 123, 132, 144, 151, 683, 731, 749
SsiI	CCGC	8 cut(s)	55, 291, 294, 379, 454, 527, 581, 1032
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	3 cut(s)	231, 429, 450
StyD4I	CCNGG	4 cut(s)	310, 387, 544, 976
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	450, 555
TasI	AATT	8 cut(s)	108, 123, 132, 144, 151, 683, 731, 749
TauI	GCSGC	3 cut(s)	294, 382, 457
TfiI	GAWTC	2 cut(s)	808, 827
Tru1I	TTAA	5 cut(s)	150, 591, 747, 753, 1119
Tru9I	TTAA	5 cut(s)	150, 591, 747, 753, 1119
TscAI	CASTG	3 cut(s)	53, 338, 444
TseI	GCWGC	7 cut(s)	57, 169, 364, 434, 583, 851, 1096
TspDTI	ATGAA	2 cut(s)	632, 1128
TspGWI	ACGGA	4 cut(s)	75, 239, 581, 813
TspRI	CASTG	3 cut(s)	53, 338, 444
Tth111I	GACNNNGTC	2 cut(s)	963, 1017
XagI	CCTNNNNNAGG	1 cut(s)	616
XapI	RAATTY	1 cut(s)	749
XceI	RCATGY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	1054
XmnI	GAANNNNTTC	2 cut(s)	488, 1063
XspI	CTAG	1 cut(s)	618
ZraI	GACGTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.