Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005832

Physical Location & Seq

Genomic Coordinates Reverse (-)

25350305 .. 25354590

Gene Structure 4286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G264200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCAGCGTCTTTCGTTCTCCAATGCCTTAACATCTCCGACCCCTCTCTTCCTCCACACAGAGCTCTCCCATCTCTCCCTCCAATCCATAACTCTAACCCCAAAACCCACAATCATCCGAATGGGCGGCGGACCCAGAACTTTCCCTGGTGGCGTATCCAAGTGGCAGTGGAAGCGCATGCAGGCAAAGAAGGCCAAGCAGCTCCTCAAGGCTCGGCTCTGCCGTGAGCGCCAAATCTACGAGATGCGAAAGAGGGCCGAGCTCAAAGCCGCCGTGTCTGAGCTTGAGCGGCCATGGGAGGTGGTCGAGAAAGCTCCAAACTTGTTCTCTGTCAGCGCCGACGAGCAAGTCAAGGTTTTGGCAGATAGGTTCCAGAGGCCTGGTGGCTTCGATATGTGGACCGAGAGGGACGGCCCTCAGTTGTTTCACACCATGGATGATTTGCCGTCTGCGAGGTTTTTCCCCAAAGGGGTTGTTCATAGTGTGAGACCGTATAAAAGAATTTCTGGGCCTGAGGATTTGGAGGATTTGGAGCTTCAAGATGAGGGCTTTGGTGGAGTTGAAGAATTGGGTAATGGGTTTAAGAGTAAAGGGAAGGTAGGAAGTTCAAGTGAGTCATTGGATATAGAGGGTTCAGATGGGGAGGGTTTGAATCTGAAACGTTCCTTGGAATCGTTTAGTATGAATGATCAAACTGGGAAGAAGAATAATGGCAGAATGAAGAAGAAGGGGAATAGGAGAAAGTCTGAGTCTTCAAGTGGGTTTGATAATGGGCAAATTGGTTGTGATAGGAAACAAAGAGTACAGAGTCCCATAATGCGCGGAGGCAAAAGTCGACATAATAGAAGGAATAGTTCAAAGTCTGGTGTTTTTGATATGAGCTTGCAGCAAGATGGAAGTTATGAACTTCAAGCGTATAATGGCCAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

34.84

Weight (kDa)

9.77

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37920
fragaria_vesca	FvH4_6g12760 FvH4_6g12760
malus_domestica	MD04G1138600.v1.1 MD12G1154300.v1.1
prunus_persica	Prupe.6G264200_v2.0.a1
pyrus_communis	pycom04g12680 pycom12g14670
rosa_chinensis	RchiOBHm_Chr2g0112341 RchiOBHm_Chr3g0464731 RchiOBHm_Chr4g0392921
rosa_laevigata	RLG00000024675
rosa_multiflora	Rmu_sc0002031.1_g000002 Rmu_sc0002549.1_g000019
rosa_roxburghii	Rroxscaffold_2G00085440 Rroxscaffold_6G00415450
rosa_rugosa	Rorug03G0073700
rosa_samantha	Rh2AG233000 Rh2CG237400 Rh2DG240600 Rh3BG136200 Rh3CG138800 Rh3DG137700 Rh4DG244800 Rh5DG414900 Rh6AG177700
rosa_wichuraiana	Rw0G012330 Rw3G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
AccBSI	CCGCTC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	835
AccII	CGCG	1 cut(s)	822
AciI	CCGC	5 cut(s)	126, 129, 270, 289, 822
AclI	AACGTT	1 cut(s)	661
AcoI	YGGCCR	2 cut(s)	290, 922
AcsI	RAATTY	1 cut(s)	501
AfaI	GTAC	1 cut(s)	804
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	7 cut(s)	539, 563, 609, 652, 756, 858, 911
AjnI	CCWGG	2 cut(s)	145, 379
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AluBI	AGCT	7 cut(s)	64, 202, 262, 283, 314, 535, 882
AluI	AGCT	7 cut(s)	64, 202, 262, 283, 314, 535, 882
Alw21I	GWGCWC	2 cut(s)	66, 264
Alw26I	GTCTC	1 cut(s)	481
AoxI	GGCC	7 cut(s)	192, 255, 290, 377, 412, 509, 922
ApeKI	GCWGC	3 cut(s)	4, 199, 886
ApoI	RAATTY	1 cut(s)	501
AspLEI	GCGC	4 cut(s)	177, 231, 338, 822
AspS9I	GGNCC	5 cut(s)	131, 255, 399, 413, 509
AvaII	GGWCC	2 cut(s)	131, 399
AxyI	CCTNAGG	1 cut(s)	513
BalI	TGGCCA	1 cut(s)	924
BanII	GRGCYC	2 cut(s)	66, 264
BbsI	GAAGAC	1 cut(s)	744
Bbv12I	GWGCWC	2 cut(s)	66, 264
BbvI	GCAGC	3 cut(s)	16, 211, 898
BccI	CCATC	3 cut(s)	78, 632, 887
BceAI	ACGGC	4 cut(s)	207, 257, 427, 430
BciT130I	CCWGG	2 cut(s)	147, 381
BciVI	GTATCC	1 cut(s)	166
BclI	TGATCA	1 cut(s)	688
BcoDI	GTCTC	1 cut(s)	481
BfoI	RGCGCY	2 cut(s)	232, 339
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	6 cut(s)	5, 127, 200, 270, 290, 887
BlsI	GCNGC	6 cut(s)	6, 128, 201, 271, 291, 888
Bme1390I	CCNGG	2 cut(s)	147, 381
Bme18I	GGWCC	2 cut(s)	131, 399
BmgT120I	GGNCC	5 cut(s)	131, 255, 399, 413, 509
BmiI	GGNNCC	2 cut(s)	133, 371
BmrFI	CCNGG	2 cut(s)	147, 381
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	744
BpuEI	CTTGAG	2 cut(s)	191, 305
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	4 cut(s)	145, 293, 432, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	700
Bse21I	CCTNAGG	1 cut(s)	513
BseBI	CCWGG	2 cut(s)	147, 381
BseDI	CCNNGG	4 cut(s)	145, 293, 432, 666
BseGI	GGATG	2 cut(s)	114, 442
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMII	CTCAG	4 cut(s)	270, 431, 504, 738
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	16, 211, 898
Bsh1236I	CGCG	1 cut(s)	822
BshFI	GGCC	7 cut(s)	194, 257, 292, 379, 414, 511, 924
BsiHKAI	GWGCWC	2 cut(s)	66, 264
BslFI	GGGAC	2 cut(s)	422, 795
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	481
BsmFI	GGGAC	2 cut(s)	422, 795
BsnI	GGCC	7 cut(s)	194, 257, 292, 379, 414, 511, 924
Bso31I	GGTCTC	1 cut(s)	481
Bsp1286I	GDGCHC	2 cut(s)	66, 264
Bsp143I	GATC	1 cut(s)	688
Bsp19I	CCATGG	2 cut(s)	293, 432
BspACI	CCGC	5 cut(s)	126, 129, 270, 289, 822
BspANI	GGCC	7 cut(s)	194, 257, 292, 379, 414, 511, 924
BspCNI	CTCAG	4 cut(s)	271, 430, 505, 739
BspFNI	CGCG	1 cut(s)	822
BspLI	GGNNCC	2 cut(s)	133, 371
BspTNI	GGTCTC	1 cut(s)	481
BsrBI	CCGCTC	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	4 cut(s)	145, 293, 432, 666
BssMI	GATC	1 cut(s)	688
BssT1I	CCWWGG	3 cut(s)	293, 432, 666
Bst2UI	CCWGG	2 cut(s)	147, 381
Bst4CI	ACNGT	1 cut(s)	492
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	4 cut(s)	179, 183, 884, 926
BstDEI	CTNAG	4 cut(s)	279, 417, 513, 747
BstDSI	CCRYGG	2 cut(s)	293, 432
BstF5I	GGATG	2 cut(s)	114, 442
BstFNI	CGCG	1 cut(s)	822
BstH2I	RGCGCY	2 cut(s)	232, 339
BstHHI	GCGC	4 cut(s)	177, 231, 338, 822
BstKTI	GATC	1 cut(s)	691
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	1 cut(s)	688
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 191, 228, 289
BstNI	CCWGG	2 cut(s)	147, 381
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	145, 379
BstUI	CGCG	1 cut(s)	822
BstV1I	GCAGC	3 cut(s)	16, 211, 898
BstV2I	GAAGAC	1 cut(s)	744
BstXI	CCANNNNNNTGG	1 cut(s)	380
Bsu36I	CCTNAGG	1 cut(s)	513
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	7 cut(s)	194, 257, 292, 379, 414, 511, 924
BtgI	CCRYGG	2 cut(s)	293, 432
BtsCI	GGATG	2 cut(s)	114, 442
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	4 cut(s)	179, 183, 884, 926
CfoI	GCGC	4 cut(s)	177, 231, 338, 822
Cfr13I	GGNCC	5 cut(s)	131, 255, 399, 413, 509
Csp6I	GTAC	1 cut(s)	803
CviAII	CATG	4 cut(s)	178, 294, 433, 930
CviQI	GTAC	1 cut(s)	803
DdeI	CTNAG	4 cut(s)	279, 417, 513, 747
DpnI	GATC	1 cut(s)	690
DpnII	GATC	1 cut(s)	688
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	2 cut(s)	290, 922
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	144
Ecl136II	GAGCTC	2 cut(s)	64, 262
Eco130I	CCWWGG	3 cut(s)	293, 432, 666
Eco147I	AGGCCT	1 cut(s)	379
Eco24I	GRGCYC	2 cut(s)	66, 264
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	131, 399
Eco53kI	GAGCTC	2 cut(s)	64, 262
Eco81I	CCTNAGG	1 cut(s)	513
EcoICRI	GAGCTC	2 cut(s)	64, 262
EcoRII	CCWGG	2 cut(s)	145, 379
EcoT14I	CCWWGG	3 cut(s)	293, 432, 666
EcoT38I	GRGCYC	2 cut(s)	66, 264
ErhI	CCWWGG	3 cut(s)	293, 432, 666
FaeI	CATG	4 cut(s)	181, 297, 436, 933
FaqI	GGGAC	2 cut(s)	422, 795
FatI	CATG	4 cut(s)	177, 293, 432, 929
FbaI	TGATCA	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	835
Fnu4HI	GCNGC	6 cut(s)	5, 127, 200, 270, 290, 887
FokI	GGATG	2 cut(s)	101, 449
FriOI	GRGCYC	2 cut(s)	66, 264
Fsp4HI	GCNGC	6 cut(s)	5, 127, 200, 270, 290, 887
GlaI	GCGC	4 cut(s)	176, 230, 337, 821
GluI	GCNGC	6 cut(s)	5, 127, 200, 270, 290, 887
HaeII	RGCGCY	2 cut(s)	232, 339
HaeIII	GGCC	7 cut(s)	194, 257, 292, 379, 414, 511, 924
HhaI	GCGC	4 cut(s)	177, 231, 338, 822
Hin1II	CATG	4 cut(s)	181, 297, 436, 933
Hin6I	GCGC	4 cut(s)	175, 229, 336, 820
HinP1I	GCGC	4 cut(s)	175, 229, 336, 820
HincII	GTYRAC	1 cut(s)	836
HindII	GTYRAC	1 cut(s)	836
HinfI	GANTC	5 cut(s)	614, 652, 671, 749, 808
Hpy166II	GTNNAC	2 cut(s)	399, 836
Hpy188I	TCNGA	6 cut(s)	39, 119, 280, 637, 657, 748
Hpy188III	TCNNGA	3 cut(s)	307, 373, 539
Hpy8I	GTNNAC	2 cut(s)	399, 836
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	4 cut(s)	184, 589, 721, 840
HpyCH4III	ACNGT	1 cut(s)	492
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	3 cut(s)	4, 181, 886
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 191, 228, 289
HpyF3I	CTNAG	4 cut(s)	279, 417, 513, 747
HpySE526I	ACGT	1 cut(s)	661
Hsp92II	CATG	4 cut(s)	181, 297, 436, 933
HspAI	GCGC	4 cut(s)	175, 229, 336, 820
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	1 cut(s)	688
LmnI	GCTCC	3 cut(s)	207, 319, 532
Lsp1109I	GCAGC	3 cut(s)	16, 211, 898
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	1 cut(s)	661
MalI	GATC	1 cut(s)	690
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	1 cut(s)	688
MboII	GAAGA	7 cut(s)	40, 575, 712, 715, 733, 736, 744
MhlI	GDGCHC	2 cut(s)	66, 264
MlsI	TGGCCA	1 cut(s)	924
MluCI	AATT	3 cut(s)	501, 566, 777
MluNI	TGGCCA	1 cut(s)	924
MlyI	GAGTC	3 cut(s)	623, 758, 817
MmeI	TCCRAC	1 cut(s)	62
Mox20I	TGGCCA	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	924
MseI	TTAA	2 cut(s)	29, 582
MslI	CAYNNNNRTG	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	924
MspR9I	CCNGG	2 cut(s)	147, 381
MvaI	CCWGG	2 cut(s)	147, 381
MvnI	CGCG	1 cut(s)	822
MwoI	GCNNNNNNNGC	4 cut(s)	172, 191, 228, 289
NcoI	CCATGG	2 cut(s)	293, 432
NdeII	GATC	1 cut(s)	688
NlaIII	CATG	4 cut(s)	181, 297, 436, 933
NlaIV	GGNNCC	2 cut(s)	133, 371
NmeAIII	GCCGAG	2 cut(s)	193, 283
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	652, 671
PkrI	GCNGC	6 cut(s)	6, 128, 201, 271, 291, 888
PleI	GAGTC	3 cut(s)	622, 757, 816
PpsI	GAGTC	3 cut(s)	622, 757, 816
Psp124BI	GAGCTC	2 cut(s)	66, 264
Psp1406I	AACGTT	1 cut(s)	661
Psp6I	CCWGG	2 cut(s)	145, 379
PspGI	CCWGG	2 cut(s)	145, 379
PspN4I	GGNNCC	2 cut(s)	133, 371
PspPI	GGNCC	5 cut(s)	131, 255, 399, 413, 509
RsaI	GTAC	1 cut(s)	804
RsaNI	GTAC	1 cut(s)	803
RseI	CAYNNNNRTG	1 cut(s)	119
SacI	GAGCTC	2 cut(s)	66, 264
SalI	GTCGAC	1 cut(s)	834
SaqAI	TTAA	2 cut(s)	29, 582
SatI	GCNGC	6 cut(s)	5, 127, 200, 270, 290, 887
Sau3AI	GATC	1 cut(s)	688
Sau96I	GGNCC	5 cut(s)	131, 255, 399, 413, 509
SchI	GAGTC	3 cut(s)	623, 758, 817
ScrFI	CCNGG	2 cut(s)	147, 381
SduI	GDGCHC	2 cut(s)	66, 264
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	2 cut(s)	131, 399
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	206, 284
SmoI	CTYRAG	2 cut(s)	206, 284
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	3 cut(s)	501, 566, 777
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	5 cut(s)	126, 129, 270, 289, 822
SstI	GAGCTC	2 cut(s)	66, 264
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	2 cut(s)	145, 379
StyI	CCWWGG	3 cut(s)	293, 432, 666
TaaI	ACNGT	1 cut(s)	492
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	3 cut(s)	306, 390, 835
TaqII	GACCGA	1 cut(s)	416
TasI	AATT	3 cut(s)	501, 566, 777
TatI	WGTACW	1 cut(s)	802
TauI	GCSGC	3 cut(s)	129, 272, 292
TfiI	GAWTC	2 cut(s)	652, 671
Tru1I	TTAA	2 cut(s)	29, 582
Tru9I	TTAA	2 cut(s)	29, 582
TscAI	CASTG	1 cut(s)	173
TseI	GCWGC	3 cut(s)	4, 199, 886
TspDTI	ATGAA	4 cut(s)	467, 698, 734, 918
TspRI	CASTG	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	131, 399
XapI	RAATTY	1 cut(s)	501
XceI	RCATGY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.