Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005832

Physical Location & Seq

Genomic Coordinates Forward (+)

25097399 .. 25097695

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG233000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCAGGCCAAGAAAGTCAAGCAGCTCCTCAACGCCAGCCTCTGCCGTGAGCGCCAAATCTACGAGATACAAGGAGGGCCGAGCTCAAAGCCGCCGTGTCGGAGCTCGAGGGAGACCGTTGAGAAACCTCCCAATTTGTTCTCCATCAGCGCTGATGAGCATGTTAAGGTCTTGGCCGATCAGTTCCAGAGGCCGAGAGGGTTTGACTTGTGGACCGAGAGGAATGGGCCAAAGCTGTTTCGGACCATGGAGGACCTACCGTCGGCGAGGTTTTTTCCCAAGGGGGTTGTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

11.19

Weight (kDa)

9.75

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37920
fragaria_vesca	FvH4_6g12760 FvH4_6g12760
malus_domestica	MD04G1138600.v1.1 MD12G1154300.v1.1
prunus_persica	Prupe.6G264200_v2.0.a1
pyrus_communis	pycom04g12680 pycom12g14670
rosa_chinensis	RchiOBHm_Chr2g0112341 RchiOBHm_Chr3g0464731 RchiOBHm_Chr4g0392921
rosa_laevigata	RLG00000024675
rosa_multiflora	Rmu_sc0002031.1_g000002 Rmu_sc0002549.1_g000019
rosa_roxburghii	Rroxscaffold_2G00085440 Rroxscaffold_6G00415450
rosa_rugosa	Rorug03G0073700
rosa_samantha	Rh2AG233000 Rh2CG237400 Rh2DG240600 Rh3BG136200 Rh3CG138800 Rh3DG137700 Rh4DG244800 Rh5DG414900 Rh6AG177700
rosa_wichuraiana	Rw0G012330 Rw3G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	174
AfeI	AGCGCT	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	262
AhdI	GACNNNNNGTC	1 cut(s)	259
AluBI	AGCT	4 cut(s)	25, 84, 105, 235
AluI	AGCT	4 cut(s)	25, 84, 105, 235
Alw21I	GWGCWC	2 cut(s)	86, 107
Alw26I	GTCTC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	106
Aor51HI	AGCGCT	1 cut(s)	151
AoxI	GGCC	5 cut(s)	6, 77, 174, 191, 227
ApeKI	GCWGC	1 cut(s)	22
AspLEI	GCGC	2 cut(s)	54, 152
AspS9I	GGNCC	5 cut(s)	77, 213, 227, 243, 253
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	3 cut(s)	213, 243, 253
BanII	GRGCYC	2 cut(s)	86, 107
Bbv12I	GWGCWC	2 cut(s)	86, 107
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	2 cut(s)	30, 79
BcoDI	GTCTC	1 cut(s)	107
BfoI	RGCGCY	2 cut(s)	55, 153
BisI	GCNGC	2 cut(s)	23, 92
BlsI	GCNGC	2 cut(s)	24, 93
Bme18I	GGWCC	3 cut(s)	213, 243, 253
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	5 cut(s)	77, 213, 227, 243, 253
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	246, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	246, 279
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	5 cut(s)	8, 79, 176, 193, 229
BsiHKAI	GWGCWC	2 cut(s)	86, 107
BsiHKCI	CYCGRG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	5 cut(s)	8, 79, 176, 193, 229
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	86, 107
Bsp143I	GATC	1 cut(s)	178
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	5 cut(s)	8, 79, 176, 193, 229
BspTNI	GGTCTC	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	246, 279
BssMI	GATC	1 cut(s)	178
BssT1I	CCWWGG	2 cut(s)	246, 279
Bst4CI	ACNGT	2 cut(s)	118, 261
BstC8I	GCNNGC	2 cut(s)	6, 37
BstDSI	CCRYGG	1 cut(s)	246
BstH2I	RGCGCY	2 cut(s)	55, 153
BstHHI	GCGC	2 cut(s)	54, 152
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	34
BsuRI	GGCC	5 cut(s)	8, 79, 176, 193, 229
BtgI	CCRYGG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	6, 37
CaiI	CAGNNNCTG	1 cut(s)	42
CfoI	GCGC	2 cut(s)	54, 152
Cfr13I	GGNCC	5 cut(s)	77, 213, 227, 243, 253
CviAII	CATG	2 cut(s)	161, 247
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DriI	GACNNNNNGTC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	174
Eam1105I	GACNNNNNGTC	1 cut(s)	259
Ecl136II	GAGCTC	2 cut(s)	84, 105
Eco130I	CCWWGG	2 cut(s)	246, 279
Eco24I	GRGCYC	2 cut(s)	86, 107
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	3 cut(s)	213, 243, 253
Eco47III	AGCGCT	1 cut(s)	151
Eco53kI	GAGCTC	2 cut(s)	84, 105
Eco88I	CYCGRG	1 cut(s)	106
EcoICRI	GAGCTC	2 cut(s)	84, 105
EcoO109I	RGGNCCY	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	246, 279
EcoT38I	GRGCYC	2 cut(s)	86, 107
ErhI	CCWWGG	2 cut(s)	246, 279
FaeI	CATG	2 cut(s)	164, 250
FaiI	YATR	3 cut(s)	162, 248, 295
FatI	CATG	2 cut(s)	160, 246
Fnu4HI	GCNGC	2 cut(s)	23, 92
FriOI	GRGCYC	2 cut(s)	86, 107
Fsp4HI	GCNGC	2 cut(s)	23, 92
GlaI	GCGC	2 cut(s)	53, 151
GluI	GCNGC	2 cut(s)	23, 92
HaeII	RGCGCY	2 cut(s)	55, 153
HaeIII	GGCC	5 cut(s)	8, 79, 176, 193, 229
HhaI	GCGC	2 cut(s)	54, 152
Hin1II	CATG	2 cut(s)	164, 250
Hin6I	GCGC	2 cut(s)	52, 150
HinP1I	GCGC	2 cut(s)	52, 150
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	102, 243
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	118, 261
HpyCH4V	TGCA	2 cut(s)	4, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	164, 250
HspAI	GCGC	2 cut(s)	52, 150
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	30, 102
LpnPI	CCDG	2 cut(s)	49, 200
Lsp1109I	GCAGC	1 cut(s)	34
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	86, 107
MluCI	AATT	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	80
MseI	TTAA	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	164, 250
NmeAIII	GCCGAG	2 cut(s)	105, 219
NspI	RCATGY	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	24, 93
PpuMI	RGGWCCY	1 cut(s)	253
Psp124BI	GAGCTC	2 cut(s)	86, 107
Psp5II	RGGWCCY	1 cut(s)	253
PspPI	GGNCC	5 cut(s)	77, 213, 227, 243, 253
PspPPI	RGGWCCY	1 cut(s)	253
PspXI	VCTCGAGB	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	42
SacI	GAGCTC	2 cut(s)	86, 107
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	23, 92
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	5 cut(s)	77, 213, 227, 243, 253
SduI	GDGCHC	2 cut(s)	86, 107
SetI	ASST	8 cut(s)	27, 86, 107, 130, 171, 237, 258, 272
Sfr274I	CTCGAG	1 cut(s)	106
SinI	GGWCC	3 cut(s)	213, 243, 253
SlaI	CTCGAG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	1 cut(s)	133
SsiI	CCGC	1 cut(s)	92
SstI	GAGCTC	2 cut(s)	86, 107
StyI	CCWWGG	2 cut(s)	246, 279
TaaI	ACNGT	2 cut(s)	118, 261
TaqI	TCGA	1 cut(s)	107
TaqII	GACCGA	1 cut(s)	230
TasI	AATT	1 cut(s)	133
TauI	GCSGC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	1 cut(s)	22
VpaK11BI	GGWCC	3 cut(s)	213, 243, 253
XceI	RCATGY	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.