Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005832

Physical Location & Seq

Genomic Coordinates Reverse (-)

45693633 .. 45693872

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG244800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGCGGCGGGCCCAGAACCTTCCCCGACGGTGTATACAAGTGGCAGTGGAAGCGCATGCAGGCCAAGAAAGCCAAGCAGCTCCTCAAGGCCCGCCTCTGCCGTGAGGGCCAAATCTACGAGATACAAGGCGGGCCGAGCTCAAAGCCGCCGTGTCGGAGCTCGAGGGAGACCGTCAAGAAGCCTCCCAATTTGTTCTCCATCAGCGCTGATGAGCAGGTTAAGGTCTTGGCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.9

Weight (kDa)

10.02

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37920
fragaria_vesca	FvH4_6g12760 FvH4_6g12760
malus_domestica	MD04G1138600.v1.1 MD12G1154300.v1.1
prunus_persica	Prupe.6G264200_v2.0.a1
pyrus_communis	pycom04g12680 pycom12g14670
rosa_chinensis	RchiOBHm_Chr2g0112341 RchiOBHm_Chr3g0464731 RchiOBHm_Chr4g0392921
rosa_laevigata	RLG00000024675
rosa_multiflora	Rmu_sc0002031.1_g000002 Rmu_sc0002549.1_g000019
rosa_roxburghii	Rroxscaffold_2G00085440 Rroxscaffold_6G00415450
rosa_rugosa	Rorug03G0073700
rosa_samantha	Rh2AG233000 Rh2CG237400 Rh2DG240600 Rh3BG136200 Rh3CG138800 Rh3DG137700 Rh4DG244800 Rh5DG414900 Rh6AG177700
rosa_wichuraiana	Rw0G012330 Rw3G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	5 cut(s)	6, 9, 94, 132, 149
AcoI	YGGCCR	1 cut(s)	231
AfeI	AGCGCT	1 cut(s)	208
AluBI	AGCT	3 cut(s)	82, 141, 162
AluI	AGCT	3 cut(s)	82, 141, 162
Alw21I	GWGCWC	2 cut(s)	143, 164
Alw26I	GTCTC	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	163
Aor51HI	AGCGCT	1 cut(s)	208
AoxI	GGCC	6 cut(s)	11, 63, 90, 109, 134, 231
ApaI	GGGCCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	79
AspLEI	GCGC	2 cut(s)	57, 209
AspS9I	GGNCC	5 cut(s)	11, 12, 91, 109, 134
AvaI	CYCGRG	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	15
BanII	GRGCYC	3 cut(s)	15, 143, 164
Bbv12I	GWGCWC	2 cut(s)	143, 164
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	2 cut(s)	87, 136
BcoDI	GTCTC	1 cut(s)	164
BfoI	RGCGCY	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	208
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	3 cut(s)	7, 80, 149
BlsI	GCNGC	3 cut(s)	8, 81, 150
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	5 cut(s)	11, 12, 91, 109, 134
BmiI	GGNNCC	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	6 cut(s)	13, 65, 92, 111, 136, 233
BsiHKAI	GWGCWC	2 cut(s)	143, 164
BsiHKCI	CYCGRG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	6 cut(s)	13, 65, 92, 111, 136, 233
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	163
Bsp120I	GGGCCC	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	15, 143, 164
BspACI	CCGC	5 cut(s)	6, 9, 94, 132, 149
BspANI	GGCC	6 cut(s)	13, 65, 92, 111, 136, 233
BspLI	GGNNCC	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	164
BssNAI	GTATAC	1 cut(s)	37
Bst1107I	GTATAC	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	32, 175
BstC8I	GCNNGC	5 cut(s)	11, 59, 63, 94, 134
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	57, 209
BstMAI	GTCTC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 71, 108, 138
BstNSI	RCATGY	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	91
BstZ17I	GTATAC	1 cut(s)	37
BsuRI	GGCC	6 cut(s)	13, 65, 92, 111, 136, 233
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	53
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	5 cut(s)	11, 59, 63, 94, 134
CfoI	GCGC	2 cut(s)	57, 209
Cfr13I	GGNCC	5 cut(s)	11, 12, 91, 109, 134
CviAII	CATG	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	231
Ecl136II	GAGCTC	2 cut(s)	141, 162
Eco24I	GRGCYC	3 cut(s)	15, 143, 164
Eco31I	GGTCTC	1 cut(s)	164
Eco47III	AGCGCT	1 cut(s)	208
Eco53kI	GAGCTC	2 cut(s)	141, 162
Eco88I	CYCGRG	1 cut(s)	163
EcoICRI	GAGCTC	2 cut(s)	141, 162
EcoT38I	GRGCYC	3 cut(s)	15, 143, 164
FaeI	CATG	1 cut(s)	61
FaiI	YATR	2 cut(s)	37, 59
FatI	CATG	1 cut(s)	57
FauI	CCCGC	3 cut(s)	2, 101, 125
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	7, 80, 149
FriOI	GRGCYC	3 cut(s)	15, 143, 164
Fsp4HI	GCNGC	3 cut(s)	7, 80, 149
GlaI	GCGC	2 cut(s)	56, 208
GluI	GCNGC	3 cut(s)	7, 80, 149
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	6 cut(s)	13, 65, 92, 111, 136, 233
HhaI	GCGC	2 cut(s)	57, 209
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	2 cut(s)	55, 207
HinP1I	GCGC	2 cut(s)	55, 207
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	32, 175
HpyCH4V	TGCA	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 71, 108, 138
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	2 cut(s)	55, 207
LmnI	GCTCC	2 cut(s)	87, 159
LpnPI	CCDG	3 cut(s)	28, 47, 203
Lsp1109I	GCAGC	1 cut(s)	91
MhlI	GDGCHC	3 cut(s)	15, 143, 164
MluCI	AATT	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	95, 100, 107, 159, 195
MseI	TTAA	1 cut(s)	222
MwoI	GCNNNNNNNGC	4 cut(s)	52, 71, 108, 138
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	13
NmeAIII	GCCGAG	1 cut(s)	162
NspI	RCATGY	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	8, 81, 150
Psp124BI	GAGCTC	2 cut(s)	143, 164
PspN4I	GGNNCC	1 cut(s)	13
PspOMI	GGGCCC	1 cut(s)	11
PspPI	GGNCC	5 cut(s)	11, 12, 91, 109, 134
PspXI	VCTCGAGB	1 cut(s)	163
SacI	GAGCTC	2 cut(s)	143, 164
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	3 cut(s)	7, 80, 149
Sau96I	GGNCC	5 cut(s)	11, 12, 91, 109, 134
SduI	GDGCHC	3 cut(s)	15, 143, 164
SetI	ASST	6 cut(s)	23, 84, 143, 164, 222, 228
Sfr274I	CTCGAG	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	86, 163
SmoI	CTYRAG	2 cut(s)	86, 163
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	5 cut(s)	6, 9, 94, 132, 149
SstI	GAGCTC	2 cut(s)	143, 164
TaaI	ACNGT	2 cut(s)	32, 175
TaqI	TCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	190
TauI	GCSGC	2 cut(s)	9, 151
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	53
TseI	GCWGC	1 cut(s)	79
TspRI	CASTG	1 cut(s)	53
XceI	RCATGY	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.