Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005832

Physical Location & Seq

Genomic Coordinates Reverse (-)

15868340 .. 15870071

Gene Structure 1732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCGGCGACGATGATCGGAATTAACCTCTCCTGCTTCAAATCAACATCGTTCTTCTCACCGGACCTCAATTCTCTCCAATCAAAGCTCTCTCTCCTATCTCTCAAACCCTCTCCAACACAGCCACGGAAATCAACAGTCATCCGTATGGGCGGTGGTCCGAGAACTTTCCCCGGCGGTGTATCAAAATGGCAATGGAAAAGGATGCAAGCGAAGAAACAGAAACAGCTTCTCAAAGCAAGGTTATGCAGAGAACGTCAGATCTACGAGATGCGAAAACGCGCCGAGCTAAAAGCGGCGGTGGCTGAGCTAGAACGACCATGGGAACCGATTCATAAACCACCGAATCTATTCTCAGTTTGTGCTGATGAGCAAGTTAAAGTACTCGCGGATCGGTTTCAGAAACCTGGTGGATTTGATTTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCCTTCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTTAAACCTTATGGTAGATTATCATCTAGCTCTGTTGTTGATGATGGTGATGAGAGTGAGGTTAAAGATGAAGAAATTGGGAAGAAGTTACGTGGTCGTAGGGTGAGGAAGAGAGGTGATGATGGAGGTAAGAGGAGGACTGAAAATCGTGGTAATGGTGGGAGATTGAGAAATGGAGGGTCTTCTTCTTCTCAGGTGTATGATATGACTTTGCAGAATGATGGGAGATATGAAATTGGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

28.22

Weight (kDa)

10.0

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37920
fragaria_vesca	FvH4_6g12760 FvH4_6g12760
malus_domestica	MD04G1138600.v1.1 MD12G1154300.v1.1
prunus_persica	Prupe.6G264200_v2.0.a1
pyrus_communis	pycom04g12680 pycom12g14670
rosa_chinensis	RchiOBHm_Chr2g0112341 RchiOBHm_Chr3g0464731 RchiOBHm_Chr4g0392921
rosa_laevigata	RLG00000024675
rosa_multiflora	Rmu_sc0002031.1_g000002 Rmu_sc0002549.1_g000019
rosa_roxburghii	Rroxscaffold_2G00085440 Rroxscaffold_6G00415450
rosa_rugosa	Rorug03G0073700
rosa_samantha	Rh2AG233000 Rh2CG237400 Rh2DG240600 Rh3BG136200 Rh3CG138800 Rh3DG137700 Rh4DG244800 Rh5DG414900 Rh6AG177700
rosa_wichuraiana	Rw0G012330 Rw3G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	282, 389
AciI	CCGC	6 cut(s)	5, 153, 177, 296, 299, 389
AclWI	GGATC	1 cut(s)	399
AfaI	GTAC	1 cut(s)	384
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	5 cut(s)	88, 229, 289, 310, 540
AluI	AGCT	5 cut(s)	88, 229, 289, 310, 540
AlwI	GGATC	1 cut(s)	399
Asp700I	GAANNNNTTC	2 cut(s)	330, 350
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	3 cut(s)	64, 158, 440
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	4 cut(s)	51, 569, 625, 638
AvaII	GGWCC	3 cut(s)	64, 158, 440
BbsI	GAAGAC	1 cut(s)	684
BccI	CCATC	4 cut(s)	431, 548, 626, 725
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	1 cut(s)	174
BfaI	CTAG	3 cut(s)	311, 480, 537
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	2 cut(s)	6, 297
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	2 cut(s)	7, 298
BmcAI	AGTACT	1 cut(s)	384
Bme1390I	CCNGG	2 cut(s)	174, 408
Bme18I	GGWCC	3 cut(s)	64, 158, 440
BmgT120I	GGNCC	3 cut(s)	64, 158, 440
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	174, 408
BmsI	GCATC	2 cut(s)	195, 261
BpiI	GAAGAC	1 cut(s)	684
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	602
BsaBI	GATNNNNATC	1 cut(s)	532
BsaJI	CCNNGG	3 cut(s)	125, 172, 320
BsaWI	WCCGGW	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	200
Bse8I	GATNNNNATC	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	3 cut(s)	125, 172, 320
BseGI	GGATG	2 cut(s)	141, 210
BseJI	GATNNNNATC	1 cut(s)	532
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	3 cut(s)	297, 369, 716
BseRI	GAGGAG	1 cut(s)	658
Bsh1236I	CGCG	2 cut(s)	282, 389
BsiSI	CCGG	2 cut(s)	62, 174
Bsp143I	GATC	4 cut(s)	15, 261, 391, 749
Bsp1720I	GCTNAGC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	6 cut(s)	5, 153, 177, 296, 299, 389
BspCNI	CTCAG	3 cut(s)	298, 368, 715
BspFNI	CGCG	2 cut(s)	282, 389
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	125, 172, 320
BssMI	GATC	4 cut(s)	15, 261, 391, 749
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	4 cut(s)	306, 355, 702, 753
BstDSI	CCRYGG	2 cut(s)	125, 320
BstF5I	GGATG	2 cut(s)	141, 210
BstFNI	CGCG	2 cut(s)	282, 389
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	4 cut(s)	18, 264, 394, 752
BstMBI	GATC	4 cut(s)	15, 261, 391, 749
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	2 cut(s)	172, 406
BstUI	CGCG	2 cut(s)	282, 389
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	2 cut(s)	261, 749
BstYI	RGATCY	2 cut(s)	261, 749
BtgI	CCRYGG	2 cut(s)	125, 320
BtsCI	GGATG	2 cut(s)	141, 210
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	3 cut(s)	64, 158, 440
CsiI	ACCWGGT	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	1 cut(s)	321
CviJI	RGCY	7 cut(s)	88, 124, 229, 289, 305, 310, 540
CviKI_1	RGCY	7 cut(s)	88, 124, 229, 289, 305, 310, 540
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	4 cut(s)	306, 355, 702, 753
DpnI	GATC	4 cut(s)	17, 263, 393, 751
DpnII	GATC	4 cut(s)	15, 261, 391, 749
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	320
Eco47I	GGWCC	3 cut(s)	64, 158, 440
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	1 cut(s)	324
FatI	CATG	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	6, 297
FokI	GGATG	2 cut(s)	128, 217
Fsp4HI	GCNGC	2 cut(s)	6, 297
FspBI	CTAG	3 cut(s)	311, 480, 537
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	2 cut(s)	6, 297
HapII	CCGG	2 cut(s)	62, 174
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	324
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	331, 346
HpaII	CCGG	2 cut(s)	62, 174
HphI	GGTGA	4 cut(s)	51, 569, 625, 638
Hpy188I	TCNGA	4 cut(s)	20, 162, 261, 402
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	256, 601
HpyCH4V	TGCA	3 cut(s)	208, 249, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	4 cut(s)	306, 355, 702, 753
HpySE526I	ACGT	2 cut(s)	256, 601
Hsp92II	CATG	1 cut(s)	324
HspAI	GCGC	1 cut(s)	282
Kzo9I	GATC	4 cut(s)	15, 261, 391, 749
LpnPI	CCDG	6 cut(s)	46, 75, 187, 393, 420, 689
LweI	GCATC	2 cut(s)	195, 261
MabI	ACCWGGT	1 cut(s)	406
MaeI	CTAG	3 cut(s)	311, 480, 537
MaeII	ACGT	2 cut(s)	256, 601
MaeIII	GTNAC	1 cut(s)	597
MalI	GATC	4 cut(s)	17, 263, 393, 751
MboI	GATC	4 cut(s)	15, 261, 391, 749
MboII	GAAGA	8 cut(s)	46, 226, 593, 604, 631, 684, 687, 690
MfeI	CAATTG	1 cut(s)	446
MflI	RGATCY	2 cut(s)	261, 749
MluCI	AATT	5 cut(s)	21, 70, 446, 585, 744
MmeI	TCCRAC	1 cut(s)	140
MroXI	GAANNNNTTC	2 cut(s)	330, 350
MseI	TTAA	4 cut(s)	24, 378, 513, 573
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	2 cut(s)	62, 174
MspR9I	CCNGG	2 cut(s)	174, 408
MunI	CAATTG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	2 cut(s)	282, 389
MwoI	GCNNNNNNNGC	1 cut(s)	302
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	4 cut(s)	15, 261, 391, 749
NlaIII	CATG	1 cut(s)	324
NlaIV	GGNNCC	1 cut(s)	327
NmeAIII	GCCGAG	1 cut(s)	310
PdmI	GAANNNNTTC	2 cut(s)	330, 350
PfeI	GAWTC	2 cut(s)	331, 346
PkrI	GCNGC	2 cut(s)	7, 298
Ppu21I	YACGTR	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	3 cut(s)	64, 158, 440
PsuI	RGATCY	2 cut(s)	261, 749
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	24, 378, 513, 573
SatI	GCNGC	2 cut(s)	6, 297
Sau3AI	GATC	4 cut(s)	15, 261, 391, 749
Sau96I	GGNCC	3 cut(s)	64, 158, 440
ScaI	AGTACT	1 cut(s)	384
ScrFI	CCNGG	2 cut(s)	174, 408
SexAI	ACCWGGT	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	195, 261
SinI	GGWCC	3 cut(s)	64, 158, 440
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	5 cut(s)	21, 70, 446, 585, 744
SsiI	CCGC	6 cut(s)	5, 153, 177, 296, 299, 389
SspMI	CTAG	3 cut(s)	311, 480, 537
StyD4I	CCNGG	2 cut(s)	172, 406
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	259, 604
TasI	AATT	5 cut(s)	21, 70, 446, 585, 744
TatI	WGTACW	1 cut(s)	382
TauI	GCSGC	2 cut(s)	8, 299
TfiI	GAWTC	2 cut(s)	331, 346
Tru1I	TTAA	4 cut(s)	24, 378, 513, 573
Tru9I	TTAA	4 cut(s)	24, 378, 513, 573
TspDTI	ATGAA	4 cut(s)	323, 494, 594, 756
TspGWI	ACGGA	2 cut(s)	134, 142
VpaK11BI	GGWCC	3 cut(s)	64, 158, 440
XmnI	GAANNNNTTC	2 cut(s)	330, 350
XspI	CTAG	3 cut(s)	311, 480, 537
ZrmI	AGTACT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.