Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005832

Physical Location & Seq

Genomic Coordinates Reverse (-)

17190456 .. 17191733

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCGTGGTAAAAGTGAGCTCAATTTTGATATATTACCGGCCCACAGCTTGTTAAGGGCCCGAAAGATAAGCCCAATATTTATCGATGAGCAGGAGCGGGTCCGGGTCGGGTTGTTTCCCCACCCCCTCATCCAAAATGCTAAGAAAGCCAACGGCCACAAACTTGAAACTCCACTCCACACTGGCTCCGCTGCCCTCACTTGCCGCCATCTTCTCCCTCCGTTCCAATCTCTGCAAACCCTAATTTCATTTCTCCCAATTCCCGCAATTTCTCAATCAATTTTTAATTCGCTTCCCAAAATGCAGCCCCTCTCGTTCTCCAACGCCTTGACGTCCCCAACCCCTCTCTTCCTCCACACGGAGCTCTCCCACCTTTCCCTCCCATCCCTAACCCTAACCCCCAAACCCATGGTAATCCGGATGGGCGGCGGGCCCAGAACCTTCCCCGGAGGCGTATCCAAGTGGCAGTGGAAACGCATGCAGGCCAAAAAAGCCAAGCAGCTCCTCAAGGCGCGGCTCTGCCGGGAGCGCCAAATCTACGAGATGCGAAAGAGGGCCGAGCTCAAAGCCGCCGTGTCCGAGCTCGAGCGGCCGTGGGAGGTCGTGGAGAAAGCTCCGAACTTGTTCTCTGTCAGCGCCGACGAGCAAGTCAAGGTCTTGGCCGATAGGTTTCAGAAGCCTGGTGGGTTCGATTTGTGGACGGAGAGGGACGGCCCCCAGTTGTTTCACACCATGGAGGACTTGCCCTCCGCGAGGTTTTTCCCCAAAGGGGTTGTTCATAGTGTGAGGCCGTATAAAAGGATTTCTGGGCTGGAGGAATTGGAGGGTTTGGAGCTTGAAGATGGAGGATTTGGAGGAGCTGAGGAATTGGGTGATGGGTTTAAAAGTAAGGGAAAATCGGGAAGTATATCATTGGATTTAGAGGACTCAGATGGATGTTTGAATCTAAAACATTCTATGGAATCGTTGAGTGTGAATGGCCAAGCTGCGAAGAAGTATAGTGGCAGAGTGGGGAAGAGGGAGAATAGGAGAAAATCTGGGTCTTCAGGTGGGTTTGAAAATGCAGAAGCTGGTTTTGATAGGAAACAGAGAGGACAGAGTCCCACAATGCCCGGTGTAGAAGCTGGTTCTGATAGAAAACAGAGAGGACAGAGTCTCACAATGCGCGGTGGAAAGACTCGGCGTAGTAGACGAAATGGTTCGGGGTCTGAAGTTTTTGATATGAGCTTGCTGCAAGATGGGAGCTATGAACTTAAGGTGCAAAATGGCAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

426

Amino Acids

47.14

Weight (kDa)

9.89

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37920
fragaria_vesca	FvH4_6g12760 FvH4_6g12760
malus_domestica	MD04G1138600.v1.1 MD12G1154300.v1.1
prunus_persica	Prupe.6G264200_v2.0.a1
pyrus_communis	pycom04g12680 pycom12g14670
rosa_chinensis	RchiOBHm_Chr2g0112341 RchiOBHm_Chr3g0464731 RchiOBHm_Chr4g0392921
rosa_laevigata	RLG00000024675
rosa_multiflora	Rmu_sc0002031.1_g000002 Rmu_sc0002549.1_g000019
rosa_roxburghii	Rroxscaffold_2G00085440 Rroxscaffold_6G00415450
rosa_rugosa	Rorug03G0073700
rosa_samantha	Rh2AG233000 Rh2CG237400 Rh2DG240600 Rh3BG136200 Rh3CG138800 Rh3DG137700 Rh4DG244800 Rh5DG414900 Rh6AG177700
rosa_wichuraiana	Rw0G012330 Rw3G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	647
AatII	GACGTC	1 cut(s)	335
AccBSI	CCGCTC	2 cut(s)	97, 589
AccI	GTMKAC	1 cut(s)	1189
AccII	CGCG	3 cut(s)	514, 752, 1167
AccIII	TCCGGA	1 cut(s)	417
AcoI	YGGCCR	4 cut(s)	154, 590, 660, 979
AcuI	CTGAAG	2 cut(s)	1029, 1230
AcyI	GRCGYC	1 cut(s)	332
AfiI	CCNNNNNNNGG	3 cut(s)	358, 753, 769
AflII	CTTAAG	1 cut(s)	1253
AgsI	TTSAA	4 cut(s)	167, 839, 943, 1058
AjnI	CCWGG	1 cut(s)	679
Alw21I	GWGCWC	4 cut(s)	21, 366, 564, 585
Alw26I	GTCTC	1 cut(s)	1160
AlwNI	CAGNNNCTG	1 cut(s)	1070
Ama87I	CYCGRG	1 cut(s)	584
Aor13HI	TCCGGA	1 cut(s)	417
ApaI	GGGCCC	2 cut(s)	61, 435
ApeKI	GCWGC	5 cut(s)	191, 304, 499, 986, 1231
Asp700I	GAANNNNTTC	2 cut(s)	623, 1198
AspLEI	GCGC	4 cut(s)	514, 531, 638, 1167
AspS9I	GGNCC	8 cut(s)	40, 57, 58, 100, 431, 432, 555, 713
AsuC2I	CCSGG	4 cut(s)	104, 447, 524, 1113
AsuHPI	GGTGA	1 cut(s)	884
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	2 cut(s)	61, 435
BalI	TGGCCA	1 cut(s)	981
BanII	GRGCYC	6 cut(s)	21, 61, 366, 435, 564, 585
BbsI	GAAGAC	1 cut(s)	1035
Bbv12I	GWGCWC	4 cut(s)	21, 366, 564, 585
BbvCI	CCTCAGC	1 cut(s)	861
BbvI	GCAGC	5 cut(s)	178, 316, 511, 973, 1218
BccI	CCATC	7 cut(s)	216, 391, 415, 836, 869, 926, 1232
BceAI	ACGGC	5 cut(s)	169, 557, 577, 727, 775
BciT130I	CCWGG	1 cut(s)	681
BciVI	GTATCC	1 cut(s)	466
BcnI	CCSGG	4 cut(s)	104, 447, 524, 1113
BcoDI	GTCTC	1 cut(s)	1160
BfoI	RGCGCY	2 cut(s)	532, 639
BfrI	CTTAAG	1 cut(s)	1253
BfuI	GTATCC	1 cut(s)	466
Bme1390I	CCNGG	5 cut(s)	104, 447, 524, 681, 1113
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	8 cut(s)	40, 57, 58, 100, 431, 432, 555, 713
BmiI	GGNNCC	5 cut(s)	59, 101, 187, 433, 715
BmrFI	CCNGG	5 cut(s)	104, 447, 524, 681, 1113
BmrI	ACTGGG	1 cut(s)	712
BmsI	GCATC	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	712
BpiI	GAAGAC	1 cut(s)	1035
BpmI	CTGGAG	1 cut(s)	833
Bpu10I	CCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	4 cut(s)	104, 447, 524, 1113
Bsa29I	ATCGAT	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	4 cut(s)	408, 445, 593, 732
BsaWI	WCCGGW	1 cut(s)	417
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 731, 761
Bsc4I	CCNNNNNNNGG	3 cut(s)	358, 753, 769
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	187, 718
BseAI	TCCGGA	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	681
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	4 cut(s)	408, 445, 593, 732
BseGI	GGATG	4 cut(s)	129, 383, 426, 941
BseLI	CCNNNNNNNGG	3 cut(s)	358, 753, 769
BseMII	CTCAG	2 cut(s)	852, 942
BseNI	ACTGG	2 cut(s)	187, 718
BseRI	GAGGAG	2 cut(s)	494, 870
BseSI	GKGCMC	2 cut(s)	61, 435
BseX3I	CGGCCG	1 cut(s)	590
BseXI	GCAGC	5 cut(s)	178, 316, 511, 973, 1218
Bsh1236I	CGCG	3 cut(s)	514, 752, 1167
Bsh1285I	CGRYCG	1 cut(s)	593
BshVI	ATCGAT	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	593
BsiHKAI	GWGCWC	4 cut(s)	21, 366, 564, 585
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	6 cut(s)	38, 103, 418, 447, 523, 1113
BslFI	GGGAC	3 cut(s)	319, 722, 1086
BslI	CCNNNNNNNGG	3 cut(s)	358, 753, 769
BsmAI	GTCTC	1 cut(s)	1160
BsmFI	GGGAC	3 cut(s)	319, 722, 1086
BsoBI	CYCGRG	1 cut(s)	584
Bsp120I	GGGCCC	2 cut(s)	57, 431
Bsp1286I	GDGCHC	6 cut(s)	21, 61, 366, 435, 564, 585
Bsp13I	TCCGGA	1 cut(s)	417
Bsp19I	CCATGG	2 cut(s)	408, 732
BspCNI	CTCAG	2 cut(s)	853, 941
BspDI	ATCGAT	1 cut(s)	84
BspEI	TCCGGA	1 cut(s)	417
BspFNI	CGCG	3 cut(s)	514, 752, 1167
BspLI	GGNNCC	5 cut(s)	59, 101, 187, 433, 715
BspTI	CTTAAG	1 cut(s)	1253
BsrBI	CCGCTC	2 cut(s)	97, 589
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	187, 718
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	4 cut(s)	408, 445, 593, 732
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	2 cut(s)	408, 732
Bst2UI	CCWGG	1 cut(s)	681
Bst6I	CTCTTC	2 cut(s)	353, 1010
BstACI	GRCGYC	1 cut(s)	332
BstAFI	CTTAAG	1 cut(s)	1253
BstC8I	GCNNGC	5 cut(s)	431, 479, 483, 1229, 1271
BstDEI	CTNAG	3 cut(s)	141, 861, 928
BstDSI	CCRYGG	3 cut(s)	408, 593, 732
BstENI	CCTNNNNNAGG	1 cut(s)	751
BstF5I	GGATG	4 cut(s)	129, 383, 426, 941
BstFNI	CGCG	3 cut(s)	514, 752, 1167
BstH2I	RGCGCY	2 cut(s)	532, 639
BstHHI	GCGC	4 cut(s)	514, 531, 638, 1167
BstMAI	GTCTC	1 cut(s)	1160
BstMCI	CGRYCG	1 cut(s)	593
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 491, 528, 589
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	5 cut(s)	102, 445, 522, 679, 1111
BstSLI	GKGCMC	2 cut(s)	61, 435
BstUI	CGCG	3 cut(s)	514, 752, 1167
BstV1I	GCAGC	5 cut(s)	178, 316, 511, 973, 1218
BstV2I	GAAGAC	1 cut(s)	1035
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstZI	CGGCCG	1 cut(s)	590
Bsu15I	ATCGAT	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	466
BsuTUI	ATCGAT	1 cut(s)	84
BtgI	CCRYGG	3 cut(s)	408, 593, 732
BtsCI	GGATG	4 cut(s)	129, 383, 426, 941
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	2 cut(s)	180, 473
Cac8I	GCNNGC	5 cut(s)	431, 479, 483, 1229, 1271
CaiI	CAGNNNCTG	1 cut(s)	1070
CfoI	GCGC	4 cut(s)	514, 531, 638, 1167
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	8 cut(s)	40, 57, 58, 100, 431, 432, 555, 713
ClaI	ATCGAT	1 cut(s)	84
CviAII	CATG	4 cut(s)	409, 478, 733, 1275
DdeI	CTNAG	3 cut(s)	141, 861, 928
DraI	TTTAAA	1 cut(s)	883
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
EaeI	YGGCCR	4 cut(s)	154, 590, 660, 979
EagI	CGGCCG	1 cut(s)	590
Eam1104I	CTCTTC	2 cut(s)	353, 1010
EarI	CTCTTC	2 cut(s)	353, 1010
Ecl136II	GAGCTC	4 cut(s)	19, 364, 562, 583
EclXI	CGGCCG	1 cut(s)	590
Eco130I	CCWWGG	2 cut(s)	408, 732
Eco24I	GRGCYC	6 cut(s)	21, 61, 366, 435, 564, 585
Eco47I	GGWCC	1 cut(s)	100
Eco52I	CGGCCG	1 cut(s)	590
Eco53kI	GAGCTC	4 cut(s)	19, 364, 562, 583
Eco57I	CTGAAG	2 cut(s)	1029, 1230
Eco88I	CYCGRG	1 cut(s)	584
EcoICRI	GAGCTC	4 cut(s)	19, 364, 562, 583
EcoNI	CCTNNNNNAGG	1 cut(s)	751
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	2 cut(s)	408, 732
EcoT38I	GRGCYC	6 cut(s)	21, 61, 366, 435, 564, 585
ErhI	CCWWGG	2 cut(s)	408, 732
FaeI	CATG	4 cut(s)	412, 481, 736, 1278
FaqI	GGGAC	3 cut(s)	319, 722, 1086
FatI	CATG	4 cut(s)	408, 477, 732, 1274
FauI	CCCGC	3 cut(s)	90, 271, 422
FblI	GTMKAC	1 cut(s)	1189
FokI	GGATG	4 cut(s)	116, 370, 433, 948
FriOI	GRGCYC	6 cut(s)	21, 61, 366, 435, 564, 585
GlaI	GCGC	4 cut(s)	513, 530, 637, 1166
GsuI	CTGGAG	1 cut(s)	833
HaeII	RGCGCY	2 cut(s)	532, 639
HapII	CCGG	6 cut(s)	38, 103, 418, 447, 523, 1113
HhaI	GCGC	4 cut(s)	514, 531, 638, 1167
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	4 cut(s)	412, 481, 736, 1278
Hin6I	GCGC	4 cut(s)	512, 529, 636, 1165
HinP1I	GCGC	4 cut(s)	512, 529, 636, 1165
HinfI	GANTC	6 cut(s)	926, 943, 962, 1099, 1153, 1177
HpaII	CCGG	6 cut(s)	38, 103, 418, 447, 523, 1113
HphI	GGTGA	1 cut(s)	884
Hpy166II	GTNNAC	2 cut(s)	699, 1190
Hpy188I	TCNGA	6 cut(s)	580, 618, 675, 931, 1132, 1210
Hpy188III	TCNNGA	2 cut(s)	418, 900
Hpy8I	GTNNAC	2 cut(s)	699, 1190
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	6 cut(s)	235, 304, 481, 1064, 1234, 1261
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 491, 528, 589
HpyF3I	CTNAG	3 cut(s)	141, 861, 928
HpySE526I	ACGT	1 cut(s)	332
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	4 cut(s)	412, 481, 736, 1278
HspAI	GCGC	4 cut(s)	512, 529, 636, 1165
Kpn2I	TCCGGA	1 cut(s)	417
LmnI	GCTCC	9 cut(s)	94, 191, 361, 507, 526, 619, 832, 857, 1242
Lsp1109I	GCAGC	5 cut(s)	178, 316, 511, 973, 1218
LweI	GCATC	1 cut(s)	534
MaeII	ACGT	1 cut(s)	332
MbiI	CCGCTC	2 cut(s)	97, 589
MboII	GAAGA	6 cut(s)	203, 340, 851, 1003, 1027, 1035
MhlI	GDGCHC	6 cut(s)	21, 61, 366, 435, 564, 585
MlsI	TGGCCA	1 cut(s)	981
MluCI	AATT	8 cut(s)	22, 243, 258, 267, 279, 286, 818, 866
MluNI	TGGCCA	1 cut(s)	981
MlyI	GAGTC	4 cut(s)	920, 1108, 1162, 1171
MmeI	TCCRAC	1 cut(s)	345
Mox20I	TGGCCA	1 cut(s)	981
MroI	TCCGGA	1 cut(s)	417
MroXI	GAANNNNTTC	2 cut(s)	623, 1198
MscI	TGGCCA	1 cut(s)	981
MseI	TTAA	4 cut(s)	53, 285, 882, 1254
Msp20I	TGGCCA	1 cut(s)	981
MspA1I	CMGCKG	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	1253
MspI	CCGG	6 cut(s)	38, 103, 418, 447, 523, 1113
MspR9I	CCNGG	5 cut(s)	104, 447, 524, 681, 1113
MvaI	CCWGG	1 cut(s)	681
MvnI	CGCG	3 cut(s)	514, 752, 1167
MwoI	GCNNNNNNNGC	4 cut(s)	146, 491, 528, 589
NciI	CCSGG	4 cut(s)	104, 447, 524, 1113
NcoI	CCATGG	2 cut(s)	408, 732
NlaIII	CATG	4 cut(s)	412, 481, 736, 1278
NlaIV	GGNNCC	5 cut(s)	59, 101, 187, 433, 715
NmeAIII	GCCGAG	2 cut(s)	583, 1159
NspI	RCATGY	1 cut(s)	481
PaeI	GCATGC	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	584
PdmI	GAANNNNTTC	2 cut(s)	623, 1198
PfeI	GAWTC	2 cut(s)	943, 962
PflFI	GACNNNGTC	2 cut(s)	1098, 1152
PleI	GAGTC	4 cut(s)	920, 1107, 1161, 1171
PpsI	GAGTC	4 cut(s)	920, 1107, 1161, 1171
Psp124BI	GAGCTC	4 cut(s)	21, 366, 564, 585
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	5 cut(s)	59, 101, 187, 433, 715
PspOMI	GGGCCC	2 cut(s)	57, 431
PspPI	GGNCC	8 cut(s)	40, 57, 58, 100, 431, 432, 555, 713
PspXI	VCTCGAGB	1 cut(s)	584
PstNI	CAGNNNCTG	1 cut(s)	1070
PsyI	GACNNNGTC	2 cut(s)	1098, 1152
SacI	GAGCTC	4 cut(s)	21, 366, 564, 585
SaqAI	TTAA	4 cut(s)	53, 285, 882, 1254
Sau96I	GGNCC	8 cut(s)	40, 57, 58, 100, 431, 432, 555, 713
SchI	GAGTC	4 cut(s)	920, 1108, 1162, 1171
ScrFI	CCNGG	5 cut(s)	104, 447, 524, 681, 1113
SduI	GDGCHC	6 cut(s)	21, 61, 366, 435, 564, 585
SfaNI	GCATC	1 cut(s)	534
Sfr274I	CTCGAG	1 cut(s)	584
SinI	GGWCC	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	584
SmlI	CTYRAG	3 cut(s)	506, 584, 1253
SmoI	CTYRAG	3 cut(s)	506, 584, 1253
SphI	GCATGC	1 cut(s)	481
Sse9I	AATT	8 cut(s)	22, 243, 258, 267, 279, 286, 818, 866
SspI	AATATT	1 cut(s)	78
SstI	GAGCTC	4 cut(s)	21, 366, 564, 585
StyD4I	CCNGG	5 cut(s)	102, 445, 522, 679, 1111
StyI	CCWWGG	2 cut(s)	408, 732
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	3 cut(s)	84, 585, 690
TasI	AATT	8 cut(s)	22, 243, 258, 267, 279, 286, 818, 866
TauI	GCSGC	5 cut(s)	207, 429, 517, 572, 592
TfiI	GAWTC	2 cut(s)	943, 962
Tru1I	TTAA	4 cut(s)	53, 285, 882, 1254
Tru9I	TTAA	4 cut(s)	53, 285, 882, 1254
TscAI	CASTG	2 cut(s)	187, 473
TseI	GCWGC	5 cut(s)	191, 304, 499, 986, 1231
TspDTI	ATGAA	3 cut(s)	237, 767, 1263
TspGWI	ACGGA	3 cut(s)	210, 374, 716
TspRI	CASTG	2 cut(s)	187, 473
Tth111I	GACNNNGTC	2 cut(s)	1098, 1152
Vha464I	CTTAAG	1 cut(s)	1253
VpaK11BI	GGWCC	1 cut(s)	100
XagI	CCTNNNNNAGG	1 cut(s)	751
XceI	RCATGY	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	1189
XmnI	GAANNNNTTC	2 cut(s)	623, 1198
ZraI	GACGTC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.