Prupe.6G264300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016667
Physical Location & Seq
Forward (+)
25356794 .. 25357273
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G264300.1

Sequence Viewer

Length: 480 bp
ATGGCTCAATATCAATTGCTTCTCCTTTGCTTGATCCTAGCAGATGCTTATGTGAGTGTAACCATGGCTGCAGATGAAAAGGCTCAAACCACAGAGCAGCCTAATTCAGCTTCAATCCCAAGCACACAGGCTCCAACTCCAAGTCCTTCTAATGACAAAAACTTGTACAAGGCACAAGCACCTGTGATCAGGAAACTTGGAAAGCACCAAGCTAGTGAGAGCAAGCCACCAACTTTAAGCCCAAGCAGTGCACCAGCTTCCACAAATCCAAGTCCAGAGACTGAAGAGAGTCTGAGTATCGTAGAAGAGGAGATCCACCTAAAAAAGCACCACCATTCTCCGGACAGGTCGGTTGCCGGTGGAGGTGTGATCCTGGGAGGGCTTGCCACCACCTTCTTGGTGGCAGTTTTCTGCTACATAAGAGCAACTGCAAGACATAAAGCAGATACTGCTGGACCTGGTGCTCATATTGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

16.71

Weight (kDa)

6.64

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016667)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09280
fragaria_vesca FvH4_6g12750
malus_domestica MD12G1154500.v1.1
prunus_persica Prupe.6G264300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0464671
rosa_laevigata RLG00000024676
rosa_multiflora Rmu_sc0002031.1_g000003 Rmu_sc0030142.1_g000002
rosa_roxburghii Rroxscaffold_6G00415470
rosa_rugosa Rorug03G0073700
rosa_samantha Rh3BG136000 Rh3CG138600 Rh3DG137600
rosa_wichuraiana Rw3G011140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 340
AclWI GGATC 3 cut(s) 28, 307, 364
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 1 cut(s) 114
AjnI CCWGG 2 cut(s) 372, 457
AluBI AGCT 4 cut(s) 110, 212, 257, 477
AluI AGCT 4 cut(s) 110, 212, 257, 477
Alw21I GWGCWC 2 cut(s) 253, 466
Alw26I GTCTC 1 cut(s) 272
Alw44I GTGCAC 1 cut(s) 249
AlwI GGATC 3 cut(s) 28, 307, 364
AlwNI CAGNNNCTG 2 cut(s) 281, 449
Aor13HI TCCGGA 1 cut(s) 340
ApaLI GTGCAC 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 68, 97
AspS9I GGNCC 1 cut(s) 455
AsuNHI GCTAGC 1 cut(s) 473
AvaII GGWCC 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 253
Bbv12I GWGCWC 2 cut(s) 253, 466
BbvI GCAGC 2 cut(s) 55, 109
BciT130I CCWGG 2 cut(s) 374, 459
BclI TGATCA 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 4 cut(s) 38, 213, 474, 478
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 2 cut(s) 69, 98
BlsI GCNGC 2 cut(s) 70, 99
Bme1390I CCNGG 2 cut(s) 374, 459
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 2 cut(s) 374, 459
BmsI GCATC 1 cut(s) 34
BmtI GCTAGC 1 cut(s) 477
BsaJI CCNNGG 2 cut(s) 63, 373
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse118I RCCGGY 1 cut(s) 356
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 2 cut(s) 374, 459
BseDI CCNNGG 2 cut(s) 63, 373
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 2 cut(s) 55, 109
BsiHKAI GWGCWC 2 cut(s) 253, 466
BsiSI CCGG 2 cut(s) 341, 357
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 253, 466
Bsp13I TCCGGA 1 cut(s) 340
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 4 cut(s) 33, 186, 312, 369
Bsp19I CCATGG 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 285
BspEI TCCGGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 73
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 3 cut(s) 28, 307, 364
BsrFI RCCGGY 1 cut(s) 356
BsrGI TGTACA 1 cut(s) 165
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 63, 373
BssMI GATC 4 cut(s) 33, 186, 312, 369
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 374, 459
Bst6I CTCTTC 2 cut(s) 279, 300
BstAPI GCANNNNNTGC 1 cut(s) 449
BstAUI TGTACA 1 cut(s) 165
BstC8I GCNNGC 3 cut(s) 224, 384, 475
BstDEI CTNAG 1 cut(s) 293
BstDSI CCRYGG 1 cut(s) 63
BstKTI GATC 4 cut(s) 36, 189, 315, 372
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 4 cut(s) 33, 186, 312, 369
BstMWI GCNNNNNNNGC 2 cut(s) 449, 470
BstNI CCWGG 2 cut(s) 374, 459
BstSCI CCNGG 2 cut(s) 372, 457
BstSFI CTRYAG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 55, 109
BstX2I RGATCY 1 cut(s) 312
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 3 cut(s) 224, 384, 475
CaiI CAGNNNCTG 2 cut(s) 281, 449
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 455
CsiI ACCWGGT 1 cut(s) 457
Csp6I GTAC 1 cut(s) 166
CviAII CATG 1 cut(s) 64
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 293
DpnI GATC 4 cut(s) 35, 188, 314, 371
DpnII GATC 4 cut(s) 33, 186, 312, 369
Eam1104I CTCTTC 2 cut(s) 279, 300
EarI CTCTTC 2 cut(s) 279, 300
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 303
EcoRII CCWGG 2 cut(s) 372, 457
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 1 cut(s) 67
FaiI YATR 5 cut(s) 51, 65, 419, 438, 468
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 69, 98
Fsp4HI GCNGC 2 cut(s) 69, 98
FspBI CTAG 4 cut(s) 38, 213, 474, 478
GluI GCNGC 2 cut(s) 69, 98
HapII CCGG 2 cut(s) 341, 357
Hin1II CATG 1 cut(s) 67
HinfI GANTC 1 cut(s) 289
HpaII CCGG 2 cut(s) 341, 357
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 3 cut(s) 190, 275, 341
Hpy8I GTNNAC 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 156, 403
HpyCH4V TGCA 3 cut(s) 71, 251, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 470
HpyF3I CTNAG 1 cut(s) 293
Hsp92II CATG 1 cut(s) 67
Kpn2I TCCGGA 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 4 cut(s) 33, 186, 312, 369
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 2 cut(s) 55, 109
LweI GCATC 1 cut(s) 34
MabI ACCWGGT 1 cut(s) 457
MaeI CTAG 4 cut(s) 38, 213, 474, 478
MaeIII GTNAC 1 cut(s) 58
MalI GATC 4 cut(s) 35, 188, 314, 371
MboI GATC 4 cut(s) 33, 186, 312, 369
MboII GAAGA 2 cut(s) 296, 317
MfeI CAATTG 1 cut(s) 14
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 2 cut(s) 253, 466
MluCI AATT 2 cut(s) 14, 103
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 3 cut(s) 301, 356, 371
MroI TCCGGA 1 cut(s) 340
MseI TTAA 1 cut(s) 236
MspI CCGG 2 cut(s) 341, 357
MspR9I CCNGG 2 cut(s) 374, 459
MunI CAATTG 1 cut(s) 14
MvaI CCWGG 2 cut(s) 374, 459
MwoI GCNNNNNNNGC 2 cut(s) 449, 470
NcoI CCATGG 1 cut(s) 63
NdeII GATC 4 cut(s) 33, 186, 312, 369
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 70, 99
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 372, 457
PspGI CCWGG 2 cut(s) 372, 457
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 1 cut(s) 73
PstNI CAGNNNCTG 2 cut(s) 281, 449
PsuI RGATCY 1 cut(s) 312
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 2 cut(s) 69, 98
Sau3AI GATC 4 cut(s) 33, 186, 312, 369
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 2 cut(s) 374, 459
SduI GDGCHC 2 cut(s) 253, 466
SexAI ACCWGGT 1 cut(s) 457
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 1 cut(s) 455
Sse9I AATT 2 cut(s) 14, 103
SspMI CTAG 4 cut(s) 38, 213, 474, 478
StyD4I CCNGG 2 cut(s) 372, 457
StyI CCWWGG 1 cut(s) 63
TasI AATT 2 cut(s) 14, 103
TatI WGTACW 1 cut(s) 165
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 1 cut(s) 253
TseI GCWGC 2 cut(s) 68, 97
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 1 cut(s) 253
VneI GTGCAC 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 2 cut(s) 394, 397
XspI CTAG 4 cut(s) 38, 213, 474, 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.