Rroxscaffold_6G00415470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016667
Physical Location & Seq
Forward (+)
37657666 .. 37658043
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00415470.1

Sequence Viewer

Length: 378 bp
ATGGCTCAGTTTCTTCTCCTTTGCTTCATCTTAGCAAGTGCTTGTGTGAATTTAACAGTGACTTCGGCTCCAAGTCCGTACAGTGCACAAGCACCTATGATTAGGAAAATGGGCAAGCACCAGAATGCACCAGCTTTAAGCCCAAGCAATGAGCAATCTCCAAAAGTAGCAGAAGCACCAGAGAGCGGAGACAGTGTGAGTATACTAGAGCAGCAGATCCACCTCAAGAAGCACCACCATGTGGACAGGTCAGTCGCCGGAGGCGGTGTGATTCTCGGAGGGCTTGCCACCACTTTCTTGGTGGGAGTTTTCTGTTACATAAGAGCCACTGCAAGACATAAAAAGCCAGAGATTGGTAGTCCCCAAGTTATTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.26

Weight (kDa)

9.18

Isoelectric Point (pI)

67.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016667)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09280
fragaria_vesca FvH4_6g12750
malus_domestica MD12G1154500.v1.1
prunus_persica Prupe.6G264300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0464671
rosa_laevigata RLG00000024676
rosa_multiflora Rmu_sc0002031.1_g000003 Rmu_sc0030142.1_g000002
rosa_roxburghii Rroxscaffold_6G00415470
rosa_rugosa Rorug03G0073700
rosa_samantha Rh3BG136000 Rh3CG138600 Rh3DG137600
rosa_wichuraiana Rw3G011140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccB7I CCANNNNNTGG 2 cut(s) 241, 353
AccBSI CCGCTC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 202
AciI CCGC 2 cut(s) 186, 264
AclWI GGATC 1 cut(s) 211
AcsI RAATTY 1 cut(s) 49
AdeI CACNNNGTG 1 cut(s) 241
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 3 cut(s) 185, 241, 353
AluBI AGCT 2 cut(s) 134, 375
AluI AGCT 2 cut(s) 134, 375
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 84
AlwI GGATC 1 cut(s) 211
ApaLI GTGCAC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 2 cut(s) 206, 376
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 209
BsaXI ACNNNNNCTCC 6 cut(s) 52, 82, 180, 210, 252, 282
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 241, 353
Bse3DI GCAATG 1 cut(s) 154
BseLI CCNNNNNNNGG 3 cut(s) 185, 241, 353
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 3 cut(s) 185, 241, 353
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 345
BsmI GAATGC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 2 cut(s) 186, 264
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 211
BsrBI CCGCTC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 154
BssMI GATC 1 cut(s) 216
BssNAI GTATAC 1 cut(s) 203
Bst1107I GTATAC 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 58, 83, 194
BstC8I GCNNGC 2 cut(s) 116, 285
BstDEI CTNAG 2 cut(s) 6, 31
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 1 cut(s) 216
BstZ17I GTATAC 1 cut(s) 203
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 4 cut(s) 63, 88, 199, 327
Cac8I GCNNGC 2 cut(s) 116, 285
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 239
CviJI RGCY 8 cut(s) 5, 68, 134, 141, 283, 326, 346, 375
CviKI_1 RGCY 8 cut(s) 5, 68, 134, 141, 283, 326, 346, 375
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 6, 31
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
DraIII CACNNNGTG 1 cut(s) 241
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
FaeI CATG 1 cut(s) 242
FaiI YATR 5 cut(s) 98, 203, 240, 320, 339
FaqI GGGAC 1 cut(s) 345
FatI CATG 1 cut(s) 238
FblI GTMKAC 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 2 cut(s) 206, 376
GluI GCNGC 1 cut(s) 212
HapII CCGG 1 cut(s) 258
Hin1II CATG 1 cut(s) 242
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 3 cut(s) 86, 203, 244
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 3 cut(s) 86, 203, 244
HpyCH4III ACNGT 3 cut(s) 58, 83, 194
HpyCH4V TGCA 3 cut(s) 86, 128, 332
HpyF3I CTNAG 2 cut(s) 6, 31
Hsp92II CATG 1 cut(s) 242
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 6 cut(s) 134, 144, 192, 232, 271, 360
Lsp1109I GCAGC 1 cut(s) 223
MaeI CTAG 2 cut(s) 206, 376
MaeIII GTNAC 2 cut(s) 58, 314
MalI GATC 1 cut(s) 218
MbiI CCGCTC 1 cut(s) 186
MboI GATC 1 cut(s) 216
MboII GAAGA 1 cut(s) 5
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 49
MnlI CCTC 3 cut(s) 233, 254, 272
MseI TTAA 2 cut(s) 53, 137
MslI CAYNNNNRTG 2 cut(s) 123, 237
MspI CCGG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 130
NdeII GATC 1 cut(s) 216
NlaIII CATG 1 cut(s) 242
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 58
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 271
PflMI CCANNNNNTGG 2 cut(s) 241, 353
PkrI GCNGC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 216
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 2 cut(s) 123, 237
SaqAI TTAA 2 cut(s) 53, 137
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 216
SduI GDGCHC 1 cut(s) 88
SetI ASST 5 cut(s) 97, 136, 225, 251, 377
SmiMI CAYNNNNRTG 2 cut(s) 123, 237
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 49
SsiI CCGC 2 cut(s) 186, 264
SspMI CTAG 2 cut(s) 206, 376
TaaI ACNGT 3 cut(s) 58, 83, 194
TasI AATT 1 cut(s) 49
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 53, 137
Tru9I TTAA 2 cut(s) 53, 137
TscAI CASTG 4 cut(s) 63, 88, 199, 334
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 16
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 4 cut(s) 63, 88, 199, 334
Van91I CCANNNNNTGG 2 cut(s) 241, 353
VneI GTGCAC 1 cut(s) 84
XapI RAATTY 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 2 cut(s) 295, 298
XmiI GTMKAC 1 cut(s) 202
XspI CTAG 2 cut(s) 206, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.