AT3G10185

GAST1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017492
Physical Location & Seq
Forward (+)
3145526 .. 3146283
758 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10185.1

Sequence Viewer

Length: 369 bp
ATGGCAACAAAACTTAGCATCATTGTTTTCTCCATTGTTGTGTTACATCTTCTTCTGTCTGCCCATATGCATCCTATATACTTGGAATCTCCTGCTCGACAACCACAACCACCACAGTCGCAACCACAACTGCCGCATCACAATAACTCTCAATACGGTACTACTCAAGGCAGTCTTCAACCCCAAGAGTGCGGGCCAAGGTGTGGAGATAGATGCTCGAATACACAATACAAGAAGCCGTGTTTGTTCTTCTGCAACAAATGTTGTAACAAGTGCTTGTGTGTGCCCCCAGGTACTTATGGCAATAAGCAAGTATGTCCTTGCTATAACAACTGGAAGACCAAGAGCGGTGGACCAAAATGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

122

Amino Acids

13.56

Weight (kDa)

9.08

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 63 - 122 3e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10185
malus_domestica MD14G1081900.v1.1
prunus_persica Prupe.4G257500_v2.0.a1 Prupe.7G049000_v2.0.a1
pyrus_communis pycom03g12580
rosa_chinensis RchiOBHm_Chr2g0124651
rosa_laevigata RLG00000018811
rosa_samantha Rh2AG310600 Rh2BG319000 Rh2CG297400 Rh2DG334100
rosa_wichuraiana Rw2G025130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 348
AciI CCGC 3 cut(s) 134, 192, 348
AfaI GTAC 2 cut(s) 160, 295
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 289
AoxI GGCC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 194, 353
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 288
BbsI GAAGAC 2 cut(s) 167, 344
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 291
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 194, 353
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 4 cut(s) 27, 79, 145, 203
BpiI GAAGAC 2 cut(s) 167, 344
BpuEI CTTGAG 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 197, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 338
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 197, 289
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 288
BshFI GGCC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 203
BsnI GGCC 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 288
BspACI CCGC 3 cut(s) 134, 192, 348
BspANI GGCC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 348
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 197, 289
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 117, 158
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 14, 366
BstF5I GGATG 1 cut(s) 70
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 288
BstV2I GAAGAC 2 cut(s) 167, 344
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 194, 353
Csp6I GTAC 2 cut(s) 159, 294
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviJI RGCY 2 cut(s) 196, 238
CviKI_1 RGCY 2 cut(s) 196, 238
CviQI GTAC 2 cut(s) 159, 294
DdeI CTNAG 2 cut(s) 14, 366
Eco130I CCWWGG 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 197
FaiI YATR 7 cut(s) 66, 68, 77, 79, 300, 316, 327
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FauI CCCGC 1 cut(s) 185
FauNDI CATATG 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 196
HinfI GANTC 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 353
Hpy8I GTNNAC 1 cut(s) 353
HpyCH4III ACNGT 2 cut(s) 117, 158
HpyCH4V TGCA 2 cut(s) 70, 255
HpyF3I CTNAG 2 cut(s) 14, 366
LpnPI CCDG 4 cut(s) 105, 276, 303, 319
LweI GCATC 4 cut(s) 27, 79, 145, 203
MaeIII GTNAC 2 cut(s) 42, 266
MbiI CCGCTC 1 cut(s) 348
MboII GAAGA 5 cut(s) 41, 44, 167, 241, 349
MhlI GDGCHC 1 cut(s) 288
Mph1103I ATGCAT 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
NdeI CATATG 1 cut(s) 66
NsiI ATGCAT 1 cut(s) 72
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 2 cut(s) 194, 353
RsaI GTAC 2 cut(s) 160, 295
RsaNI GTAC 2 cut(s) 159, 294
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 1 cut(s) 134
Sau96I GGNCC 2 cut(s) 194, 353
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 288
SetI ASST 2 cut(s) 203, 295
SfaNI GCATC 4 cut(s) 27, 79, 145, 203
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
SsiI CCGC 3 cut(s) 134, 192, 348
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 117, 158
TaqI TCGA 2 cut(s) 97, 218
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 1 cut(s) 86
Van91I CCANNNNNTGG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.