pycom03g12580

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0017492
Physical Location & Seq
Reverse (-)
13239404 .. 13240371
968 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g12580.2

Sequence Viewer

Length: 348 bp
ATGGCTACTAAATTACTAAGCATTTTCATGTTATGTGTGGCTTTGATACTTGTTTTACTTGAACCAAACCAGGGCGCCTCCACCGTAGAAACATTGGCATTTCAACAACAGCACCAAGGGGATTACCAACCGTATGGTACTACCCAAGGCAGCCTTCGTCCTCAAGAGTGCGCACCGCGATGTACAAGTCGGTGCTCGGCTACGGCATACAAGAAGCCTTGTTTGTTTTTCTGCCAAAAGTGTTGCGCCAAGTGCTTGTGTGTGCCTCCTGGAACATATGGAAACAAACAAGTTTGCCCTTGCTACAATAACTGGAAGACCAAGAGAGGAGGACCAAAATGCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

116

Amino Acids

12.68

Weight (kDa)

9.02

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10185
malus_domestica MD14G1081900.v1.1
prunus_persica Prupe.4G257500_v2.0.a1 Prupe.7G049000_v2.0.a1
pyrus_communis pycom03g12580
rosa_chinensis RchiOBHm_Chr2g0124651
rosa_laevigata RLG00000018811
rosa_samantha Rh2AG310600 Rh2BG319000 Rh2CG297400 Rh2DG334100
rosa_wichuraiana Rw2G025130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 178
AciI CCGC 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 139, 184
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 2 cut(s) 62, 104
AjnI CCWGG 2 cut(s) 69, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
Alw21I GWGCWC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 150
AspLEI GCGC 3 cut(s) 77, 173, 248
AspS9I GGNCC 1 cut(s) 332
AvaII GGWCC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 2 cut(s) 71, 270
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 71, 270
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 71, 270
BpiI GAAGAC 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 70, 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 2 cut(s) 71, 270
BseDI CCNNGG 3 cut(s) 70, 115, 145
BseLI CCNNNNNNNGG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 182
BspACI CCGC 1 cut(s) 176
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 182
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 3 cut(s) 70, 115, 145
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 115, 145
Bst2UI CCWGG 2 cut(s) 71, 270
Bst4CI ACNGT 2 cut(s) 85, 132
BstACI GRCGYC 1 cut(s) 75
BstAUI TGTACA 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 178
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 3 cut(s) 77, 173, 248
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 2 cut(s) 71, 270
BstSCI CCNGG 2 cut(s) 69, 268
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 323
BstXI CCANNNNNNTGG 1 cut(s) 134
BtgZI GCGATG 1 cut(s) 193
CfoI GCGC 3 cut(s) 77, 173, 248
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 138, 183
CviAII CATG 1 cut(s) 28
CviJI RGCY 5 cut(s) 5, 41, 153, 200, 217
CviKI_1 RGCY 5 cut(s) 5, 41, 153, 200, 217
CviQI GTAC 2 cut(s) 138, 183
DdeI CTNAG 1 cut(s) 17
DinI GGCGCC 1 cut(s) 76
Eco130I CCWWGG 2 cut(s) 115, 145
Eco47I GGWCC 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 69, 268
EcoT14I CCWWGG 2 cut(s) 115, 145
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
ErhI CCWWGG 2 cut(s) 115, 145
FaeI CATG 1 cut(s) 31
FaiI YATR 6 cut(s) 29, 34, 135, 208, 277, 279
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 1 cut(s) 27
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
FspAI RTGCGCAY 1 cut(s) 172
FspI TGCGCA 1 cut(s) 172
GlaI GCGC 3 cut(s) 76, 172, 247
GluI GCNGC 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 78
HhaI GCGC 3 cut(s) 77, 173, 248
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 3 cut(s) 75, 171, 246
HinP1I GCGC 3 cut(s) 75, 171, 246
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 2 cut(s) 85, 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 1 cut(s) 17
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 3 cut(s) 75, 171, 246
KasI GGCGCC 1 cut(s) 74
LpnPI CCDG 5 cut(s) 56, 83, 255, 282, 298
Lsp1109I GCAGC 1 cut(s) 162
MboII GAAGA 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 11
Mly113I GGCGCC 1 cut(s) 75
MnlI CCTC 5 cut(s) 88, 171, 276, 320, 323
MslI CAYNNNNRTG 2 cut(s) 26, 178
MspR9I CCNGG 2 cut(s) 71, 270
MvaI CCWGG 2 cut(s) 71, 270
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 252
NarI GGCGCC 1 cut(s) 75
NdeI CATATG 1 cut(s) 277
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 76
NmeAIII GCCGAG 1 cut(s) 176
NsbI TGCGCA 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 1 cut(s) 152
PluTI GGCGCC 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 69, 268
PspGI CCWGG 2 cut(s) 69, 268
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 332
RsaI GTAC 2 cut(s) 139, 184
RsaNI GTAC 2 cut(s) 138, 183
RseI CAYNNNNRTG 2 cut(s) 26, 178
SatI GCNGC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 71, 270
SduI GDGCHC 1 cut(s) 197
SfoI GGCGCC 1 cut(s) 76
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 26, 178
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
Sse9I AATT 1 cut(s) 11
SsiI CCGC 1 cut(s) 176
SspDI GGCGCC 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 69, 268
StyI CCWWGG 2 cut(s) 115, 145
TaaI ACNGT 2 cut(s) 85, 132
TasI AATT 1 cut(s) 11
TatI WGTACW 1 cut(s) 182
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.