MD14G1081900.v1.1

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0017492
Physical Location & Seq
Forward (+)
9430760 .. 9433100
2341 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1081900.v1.1.491

Sequence Viewer

Length: 351 bp
ATGGCAAGGGCTTTAAATTTTGTGATGTTCTTCCTTGTTATACTGTTCTTTGCCCTAACAGTAGAGAACCATGCTAATGCCACTGGCACTGAAGCTCCAGCACCGCAGCCCCAAAGCAGTAACAACCATACCATGAATGGAATCACTGAAGGCAGCCTTCAACCTCAAGAGTGCGGTCCTCGTTGCACCACAAGATGCTCAAACACACAGTACAAGAAACCATGTTTGTTTTTCTGCCAAAAGTGCTGTGCCAAGTGCTTGTGCGTCCCTCCAGGCACATATGGGAACAAGCAATTCTGCCCTTGCTACAACAACTGGAAGACCAAGAGAGGAGGCCCCAAATGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

117

Amino Acids

12.85

Weight (kDa)

9.0

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 57 - 116 2.8e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10185
malus_domestica MD14G1081900.v1.1
prunus_persica Prupe.4G257500_v2.0.a1 Prupe.7G049000_v2.0.a1
pyrus_communis pycom03g12580
rosa_chinensis RchiOBHm_Chr2g0124651
rosa_laevigata RLG00000018811
rosa_samantha Rh2AG310600 Rh2BG319000 Rh2CG297400 Rh2DG334100
rosa_wichuraiana Rw2G025130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 104, 174
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 2 cut(s) 111, 168
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 2 cut(s) 106, 153
ApoI RAATTY 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 176, 335
AvaII GGWCC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 326
BbvI GCAGC 2 cut(s) 118, 165
BciT130I CCWGG 1 cut(s) 273
BisI GCNGC 2 cut(s) 107, 154
BlsI GCNGC 2 cut(s) 108, 155
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 2 cut(s) 176, 335
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 2 cut(s) 81, 255
BpuEI CTTGAG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bse1I ACTGG 2 cut(s) 88, 320
BseBI CCWGG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 88, 320
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 2 cut(s) 118, 165
BshFI GGCC 1 cut(s) 336
BslFI GGGAC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 1 cut(s) 336
BspACI CCGC 2 cut(s) 104, 174
BspANI GGCC 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 337
BsrI ACTGG 2 cut(s) 88, 320
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 3 cut(s) 45, 61, 210
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 118, 165
BstV2I GAAGAC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 336
BtsIMutI CAGTG 3 cut(s) 81, 87, 144
Cfr13I GGNCC 2 cut(s) 176, 335
CseI GACGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 211
CviAII CATG 3 cut(s) 71, 133, 222
CviJI RGCY 5 cut(s) 11, 95, 109, 156, 336
CviKI_1 RGCY 5 cut(s) 11, 95, 109, 156, 336
CviQI GTAC 1 cut(s) 211
DraI TTTAAA 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 2 cut(s) 111, 168
EcoO109I RGGNCCY 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 3 cut(s) 74, 136, 225
FaiI YATR 7 cut(s) 41, 72, 129, 134, 223, 280, 282
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 1 cut(s) 251
FatI CATG 3 cut(s) 70, 132, 221
FauNDI CATATG 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 107, 154
Fsp4HI GCNGC 2 cut(s) 107, 154
GluI GCNGC 2 cut(s) 107, 154
GsuI CTGGAG 2 cut(s) 81, 255
HaeIII GGCC 1 cut(s) 336
HgaI GACGC 1 cut(s) 253
Hin1II CATG 3 cut(s) 74, 136, 225
HinfI GANTC 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 143, 167
HpyCH4III ACNGT 3 cut(s) 45, 61, 210
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
Hsp92II CATG 3 cut(s) 74, 136, 225
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 5 cut(s) 69, 111, 258, 285, 301
Lsp1109I GCAGC 2 cut(s) 118, 165
LweI GCATC 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 119
MboII GAAGA 2 cut(s) 22, 331
MluCI AATT 2 cut(s) 16, 293
MnlI CCTC 5 cut(s) 174, 189, 279, 323, 326
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 243
NdeI CATATG 1 cut(s) 280
NlaIII CATG 3 cut(s) 74, 136, 225
NlaIV GGNNCC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 141
PkrI GCNGC 2 cut(s) 108, 155
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 2 cut(s) 176, 335
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 2 cut(s) 107, 154
Sau96I GGNCC 2 cut(s) 176, 335
ScrFI CCNGG 1 cut(s) 273
SetI ASST 2 cut(s) 97, 166
SfaNI GCATC 1 cut(s) 185
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
Sse9I AATT 2 cut(s) 16, 293
SsiI CCGC 2 cut(s) 104, 174
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 3 cut(s) 45, 61, 210
TasI AATT 2 cut(s) 16, 293
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 3 cut(s) 88, 94, 151
TseI GCWGC 2 cut(s) 106, 153
TspDTI ATGAA 1 cut(s) 149
TspRI CASTG 3 cut(s) 88, 94, 151
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.