Rh2BG319000

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017492
Physical Location & Seq
Forward (+)
38024540 .. 38025986
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG319000.1

Sequence Viewer

Length: 354 bp
ATGGCAAGGACGCCAAGTCTTGTGACACTCGCCCTTGTTATGCTTCTCGTTTTAACAGGAGAGAACCATGCGGCTATTAGCAGGAGCATTGAGGCTCCATCACCTCAGCCCCAGATAAGCAGCAACAACCAAACCATGCATGGAGCCACGGAAGGCAGCCTTGAACCTCATGAGTGTGGCCCTCGTTGCAGCACGAGATGCTCAAAGACACAATATAAGAAGCCATGTCTGTTTTTCTGCCAAAAGTGTTGCGCCAAGTGCTTGTGCGTTCCTCCGGGCACCTACGGCAACAAGCAATTCTGCCCTTGCTATAACAACTGGAAGACAAAGAGAGGGGGTCCCAAATGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

117

Amino Acids

12.78

Weight (kDa)

9.1

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 58 - 117 2e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10185
malus_domestica MD14G1081900.v1.1
prunus_persica Prupe.4G257500_v2.0.a1 Prupe.7G049000_v2.0.a1
pyrus_communis pycom03g12580
rosa_chinensis RchiOBHm_Chr2g0124651
rosa_laevigata RLG00000018811
rosa_samantha Rh2AG310600 Rh2BG319000 Rh2CG297400 Rh2DG334100
rosa_wichuraiana Rw2G025130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 11
AgsI TTSAA 1 cut(s) 164
AhdI GACNNNNNGTC 1 cut(s) 15
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 3 cut(s) 120, 156, 189
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 2 cut(s) 179, 338
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 93
AvaII GGWCC 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 281
BanI GGYRCC 1 cut(s) 278
BauI CACGAG 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 329
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 132, 168, 201
BccI CCATC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 301
BcnI CCSGG 1 cut(s) 276
BisI GCNGC 4 cut(s) 72, 121, 157, 190
BlsI GCNGC 4 cut(s) 73, 122, 158, 191
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 338
BmeRI GACNNNNNGTC 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 179, 338
BmiI GGNNCC 5 cut(s) 96, 145, 280, 339, 340
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 281
BseXI GCAGC 3 cut(s) 132, 168, 201
BshFI GGCC 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 278
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 281
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 118
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 5 cut(s) 96, 145, 280, 339, 340
BspT107I GGYRCC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 193
BstACI GRCGYC 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 254
BstMWI GCNNNNNNNGC 4 cut(s) 186, 198, 258, 285
BstSCI CCNGG 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 281
BstV1I GCAGC 3 cut(s) 132, 168, 201
BstV2I GAAGAC 1 cut(s) 329
BsuRI GGCC 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 147
CciI TCATGA 1 cut(s) 169
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 179, 338
CseI GACGC 1 cut(s) 19
CviAII CATG 5 cut(s) 68, 136, 140, 170, 225
CviJI RGCY 7 cut(s) 74, 95, 109, 146, 159, 180, 223
CviKI_1 RGCY 7 cut(s) 74, 95, 109, 146, 159, 180, 223
DdeI CTNAG 1 cut(s) 105
DriI GACNNNNNGTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 338
EcoO109I RGGNCCY 1 cut(s) 338
EcoT22I ATGCAT 1 cut(s) 141
FaeI CATG 5 cut(s) 71, 139, 143, 173, 228
FaiI YATR 8 cut(s) 41, 69, 137, 141, 171, 216, 226, 312
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FaqI GGGAC 1 cut(s) 324
FatI CATG 5 cut(s) 67, 135, 139, 169, 224
Fnu4HI GCNGC 4 cut(s) 72, 121, 157, 190
Fsp4HI GCNGC 4 cut(s) 72, 121, 157, 190
GlaI GCGC 1 cut(s) 253
GluI GCNGC 4 cut(s) 72, 121, 157, 190
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 275
HgaI GACGC 1 cut(s) 19
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 5 cut(s) 71, 139, 143, 173, 228
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 146
HpyCH4V TGCA 2 cut(s) 139, 189
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 198, 258, 285
HpyF3I CTNAG 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 5 cut(s) 71, 139, 143, 173, 228
HspAI GCGC 1 cut(s) 252
KflI GGGWCCC 1 cut(s) 338
LmnI GCTCC 3 cut(s) 84, 100, 143
LpnPI CCDG 5 cut(s) 42, 67, 125, 288, 304
Lsp1109I GCAGC 3 cut(s) 132, 168, 201
LweI GCATC 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 22
MboII GAAGA 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 1 cut(s) 296
MnlI CCTC 6 cut(s) 85, 114, 177, 192, 282, 326
Mph1103I ATGCAT 1 cut(s) 141
MseI TTAA 2 cut(s) 53, 352
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 276
MwoI GCNNNNNNNGC 4 cut(s) 186, 198, 258, 285
NciI CCSGG 1 cut(s) 276
NlaIII CATG 5 cut(s) 71, 139, 143, 173, 228
NlaIV GGNNCC 5 cut(s) 96, 145, 280, 339, 340
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 141
PagI TCATGA 1 cut(s) 169
PkrI GCNGC 4 cut(s) 73, 122, 158, 191
PpuMI RGGWCCY 1 cut(s) 338
Psp5II RGGWCCY 1 cut(s) 338
PspN4I GGNNCC 5 cut(s) 96, 145, 280, 339, 340
PspPI GGNCC 2 cut(s) 179, 338
PspPPI RGGWCCY 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 2 cut(s) 53, 352
SatI GCNGC 4 cut(s) 72, 121, 157, 190
Sau96I GGNCC 2 cut(s) 179, 338
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 281
SetI ASST 3 cut(s) 106, 169, 284
SfaNI GCATC 1 cut(s) 188
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 1 cut(s) 296
SsiI CCGC 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 274
TasI AATT 1 cut(s) 296
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 53, 352
Tru9I TTAA 2 cut(s) 53, 352
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 120, 156, 189
Tsp45I GTSAC 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.