Rh2AG310600

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017492
Physical Location & Seq
Forward (+)
39557396 .. 39559987
2592 bp
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UTR
Exon/CDS
Intron
Rh2AG310600.1

Sequence Viewer

Length: 327 bp
ATGGATAGAAAAGAAAGCAAACTGAAATCACATAATACAGTGGCGGCTATTAGCAGGAGCATTGAGGCTCCATCACCACAGCCCCAGATAAGCAGCAACAACCAAACCATGCATGGAGCCACGGAAGGCAGCCTTGAACCTCATGAGTGTGGCCCTCGTTGCAGCACGAGATGCTCAAAGACACAATATAAGAAGCCATGTCTGTTTTTCTGCCAAAAGTGTTGCGCCAAGTGCTTGTGCGTTCCTCCGGGCACCTACGGCAACAAGCAATTCTGCCCTTGCTATAACAACTGGAAGACAAAGAGAGGGGGTCCCAAATGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

108

Amino Acids

11.97

Weight (kDa)

9.25

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 49 - 108 1.6e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10185
malus_domestica MD14G1081900.v1.1
prunus_persica Prupe.4G257500_v2.0.a1 Prupe.7G049000_v2.0.a1
pyrus_communis pycom03g12580
rosa_chinensis RchiOBHm_Chr2g0124651
rosa_laevigata RLG00000018811
rosa_samantha Rh2AG310600 Rh2BG319000 Rh2CG297400 Rh2DG334100
rosa_wichuraiana Rw2G025130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AciI CCGC 1 cut(s) 44
AgsI TTSAA 1 cut(s) 137
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 3 cut(s) 93, 129, 162
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 152, 311
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 66
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 254
BanI GGYRCC 1 cut(s) 251
BauI CACGAG 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 105, 141, 174
BccI CCATC 1 cut(s) 79
BceAI ACGGC 1 cut(s) 274
BcnI CCSGG 1 cut(s) 249
BisI GCNGC 4 cut(s) 45, 94, 130, 163
BlsI GCNGC 4 cut(s) 46, 95, 131, 164
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 152, 311
BmiI GGNNCC 5 cut(s) 69, 118, 253, 312, 313
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 3 cut(s) 105, 141, 174
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 254
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 153
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 5 cut(s) 69, 118, 253, 312, 313
BspT107I GGYRCC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 120
BssSI CACGAG 1 cut(s) 166
Bst2BI CACGAG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 40
BstAPI GCANNNNNTGC 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 227
BstMWI GCNNNNNNNGC 4 cut(s) 159, 171, 231, 258
BstSCI CCNGG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 254
BstV1I GCAGC 3 cut(s) 105, 141, 174
BstV2I GAAGAC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 45
CciI TCATGA 1 cut(s) 142
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 152, 311
CviAII CATG 4 cut(s) 109, 113, 143, 198
CviJI RGCY 7 cut(s) 47, 68, 82, 119, 132, 153, 196
CviKI_1 RGCY 7 cut(s) 47, 68, 82, 119, 132, 153, 196
Eco47I GGWCC 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 311
EcoT22I ATGCAT 1 cut(s) 114
FaeI CATG 4 cut(s) 112, 116, 146, 201
FaiI YATR 7 cut(s) 33, 110, 114, 144, 189, 199, 285
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 1 cut(s) 297
FatI CATG 4 cut(s) 108, 112, 142, 197
Fnu4HI GCNGC 4 cut(s) 45, 94, 130, 163
Fsp4HI GCNGC 4 cut(s) 45, 94, 130, 163
GlaI GCGC 1 cut(s) 226
GluI GCNGC 4 cut(s) 45, 94, 130, 163
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 248
HhaI GCGC 1 cut(s) 227
Hin1II CATG 4 cut(s) 112, 116, 146, 201
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 112, 162
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 171, 231, 258
Hsp92II CATG 4 cut(s) 112, 116, 146, 201
HspAI GCGC 1 cut(s) 225
KflI GGGWCCC 1 cut(s) 311
LmnI GCTCC 3 cut(s) 57, 73, 116
LpnPI CCDG 4 cut(s) 40, 98, 261, 277
Lsp1109I GCAGC 3 cut(s) 105, 141, 174
LweI GCATC 1 cut(s) 161
MboII GAAGA 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 1 cut(s) 269
MnlI CCTC 5 cut(s) 58, 150, 165, 255, 299
Mph1103I ATGCAT 1 cut(s) 114
MseI TTAA 1 cut(s) 325
MslI CAYNNNNRTG 1 cut(s) 147
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 249
MwoI GCNNNNNNNGC 4 cut(s) 159, 171, 231, 258
NciI CCSGG 1 cut(s) 249
NlaIII CATG 4 cut(s) 112, 116, 146, 201
NlaIV GGNNCC 5 cut(s) 69, 118, 253, 312, 313
NsiI ATGCAT 1 cut(s) 114
PagI TCATGA 1 cut(s) 142
PkrI GCNGC 4 cut(s) 46, 95, 131, 164
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
PspN4I GGNNCC 5 cut(s) 69, 118, 253, 312, 313
PspPI GGNCC 2 cut(s) 152, 311
PspPPI RGGWCCY 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 4 cut(s) 45, 94, 130, 163
Sau96I GGNCC 2 cut(s) 152, 311
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 254
SetI ASST 2 cut(s) 142, 257
SfaNI GCATC 1 cut(s) 161
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 1 cut(s) 269
SsiI CCGC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 40
TasI AATT 1 cut(s) 269
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 45
TseI GCWGC 3 cut(s) 93, 129, 162
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 311
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.