Prupe.4G257500_v2.0.a1

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017492
Physical Location & Seq
Forward (+)
18260714 .. 18262374
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G257500.1

Sequence Viewer

Length: 339 bp
ATGGCTTTTAAGTTGAGCATTTTCATGCTCTGTGTAGCAGCTTTGATGCTTGTGTTACTAGAAGCAAACCAGGCCTCTACTGTGGAAACATCAGCATTGCAACAACAGGAGAATTACCAACCATATGGTACTACCCAAGGCAGCCTTCGTCCTCAAGAGTGCGGACCGCGGTGCACTACTCGGTGCTCGGCCACAGCATACAAGAAGCCTTGTCTGTTTTTCTGCCAAAAGTGTTGTGCAAAGTGCTTGTGTGTGCCTCCTGGAACATATGGAAACAAGCAAGTTTGCCCTTGCTACAACAACTGGAAGACCAAGAGAGGAGGACCAAAATGCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

113

Amino Acids

12.36

Weight (kDa)

9.02

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10185
malus_domestica MD14G1081900.v1.1
prunus_persica Prupe.4G257500_v2.0.a1 Prupe.7G049000_v2.0.a1
pyrus_communis pycom03g12580
rosa_chinensis RchiOBHm_Chr2g0124651
rosa_laevigata RLG00000018811
rosa_samantha Rh2AG310600 Rh2BG319000 Rh2CG297400 Rh2DG334100
rosa_wichuraiana Rw2G025130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 169
AciI CCGC 3 cut(s) 162, 167, 169
AcoI YGGCCR 1 cut(s) 189
AfaI GTAC 1 cut(s) 130
AjnI CCWGG 2 cut(s) 69, 259
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw21I GWGCWC 2 cut(s) 176, 188
Alw44I GTGCAC 1 cut(s) 172
AoxI GGCC 2 cut(s) 72, 189
ApaLI GTGCAC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 38, 141
AspS9I GGNCC 2 cut(s) 164, 323
AvaII GGWCC 2 cut(s) 164, 323
BaeGI GKGCMC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 2 cut(s) 176, 188
BbvI GCAGC 2 cut(s) 50, 153
BciT130I CCWGG 2 cut(s) 71, 261
BfaI CTAG 1 cut(s) 59
BisI GCNGC 2 cut(s) 39, 142
BlsI GCNGC 2 cut(s) 40, 143
Bme1390I CCNGG 2 cut(s) 71, 261
Bme18I GGWCC 2 cut(s) 164, 323
BmgT120I GGNCC 2 cut(s) 164, 323
BmrFI CCNGG 2 cut(s) 71, 261
BmsI GCATC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 136, 167
Bse1I ACTGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 95
BseBI CCWGG 2 cut(s) 71, 261
BseDI CCNNGG 2 cut(s) 136, 167
BseMI GCAATG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 333
BseSI GKGCMC 1 cut(s) 176
BseXI GCAGC 2 cut(s) 50, 153
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 74, 191
BsiHKAI GWGCWC 2 cut(s) 176, 188
BsnI GGCC 2 cut(s) 74, 191
Bsp1286I GDGCHC 2 cut(s) 176, 188
BspACI CCGC 3 cut(s) 162, 167, 169
BspANI GGCC 2 cut(s) 74, 191
BspFNI CGCG 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 95
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 136, 167
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 2 cut(s) 71, 261
Bst4CI ACNGT 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 167
BstFNI CGCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 2 cut(s) 71, 261
BstSCI CCNGG 2 cut(s) 69, 259
BstSLI GKGCMC 1 cut(s) 176
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 50, 153
BstV2I GAAGAC 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 125
BsuRI GGCC 2 cut(s) 74, 191
BtgI CCRYGG 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 164, 323
Cfr42I CCGCGG 1 cut(s) 170
CpoI CGGWCCG 1 cut(s) 164
Csp6I GTAC 1 cut(s) 129
CspI CGGWCCG 1 cut(s) 164
CviAII CATG 1 cut(s) 25
CviJI RGCY 6 cut(s) 5, 41, 74, 144, 191, 208
CviKI_1 RGCY 6 cut(s) 5, 41, 74, 144, 191, 208
CviQI GTAC 1 cut(s) 129
EaeI YGGCCR 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 74
Eco47I GGWCC 2 cut(s) 164, 323
EcoRII CCWGG 2 cut(s) 69, 259
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 28
FaiI YATR 6 cut(s) 26, 124, 126, 199, 268, 270
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 1 cut(s) 24
FauNDI CATATG 2 cut(s) 124, 268
Fnu4HI GCNGC 2 cut(s) 39, 142
Fsp4HI GCNGC 2 cut(s) 39, 142
FspBI CTAG 1 cut(s) 59
GluI GCNGC 2 cut(s) 39, 142
HaeIII GGCC 2 cut(s) 74, 191
Hin1II CATG 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 174
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 100, 174, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 28
KspI CCGCGG 1 cut(s) 170
LpnPI CCDG 6 cut(s) 56, 83, 92, 246, 273, 289
Lsp1109I GCAGC 2 cut(s) 50, 153
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 54
MboII GAAGA 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 176, 188
MluCI AATT 1 cut(s) 112
MnlI CCTC 5 cut(s) 85, 162, 267, 311, 314
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 71, 261
MvaI CCWGG 2 cut(s) 71, 261
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeI CATATG 2 cut(s) 124, 268
NlaIII CATG 1 cut(s) 28
NmeAIII GCCGAG 1 cut(s) 167
PceI AGGCCT 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 2 cut(s) 40, 143
Psp6I CCWGG 2 cut(s) 69, 259
PspGI CCWGG 2 cut(s) 69, 259
PspPI GGNCC 2 cut(s) 164, 323
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 23
Rsr2I CGGWCCG 1 cut(s) 164
RsrII CGGWCCG 1 cut(s) 164
SacII CCGCGG 1 cut(s) 170
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 2 cut(s) 39, 142
Sau96I GGNCC 2 cut(s) 164, 323
ScrFI CCNGG 2 cut(s) 71, 261
SduI GDGCHC 2 cut(s) 176, 188
SetI ASST 1 cut(s) 43
SfaNI GCATC 1 cut(s) 36
Sfr303I CCGCGG 1 cut(s) 170
SgrBI CCGCGG 1 cut(s) 170
SinI GGWCC 2 cut(s) 164, 323
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 112
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 3 cut(s) 162, 167, 169
SspMI CTAG 1 cut(s) 59
StuI AGGCCT 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 69, 259
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 82
TasI AATT 1 cut(s) 112
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseI GCWGC 2 cut(s) 38, 141
TspDTI ATGAA 1 cut(s) 13
VneI GTGCAC 1 cut(s) 172
VpaK11BI GGWCC 2 cut(s) 164, 323
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.