AT3G10630

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016637
Physical Location & Seq
Reverse (-)
3321463 .. 3323272
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10630.1

Sequence Viewer

Length: 1464 bp
ATGGATCAACCACCAGATCGAAGCAAGCGACCATGGAAATTCTCCACCATCGTCTACTCTTCATCGATCTTATTCCTTCTACTTTCGATATTCTTACTTGGCTTCACAAATACCGATCTCTACAAAGTCCAAAGTCTGAGATTCACCTTCACTGTGAACCGCTTCTATAGCTATCTTCAATTCCTTCTAGGCTTTCATGATGGAACTCCCAAATCCAAATCCGAAACCCTAAATCCAGCTTCTTCTACGCCGCACTGCGTGTTATGGATGGCTCCTTTTCTCTCGAGTGGTGGTTACAGCTCAGAAGCTTGGTCTTACGTTTTATCACTTCGTAACCATCTCACAAACCCTAGATTTCGAATCACCATCGAGCACCATGGTGATCTAGAATCAGTGGAGTTTTGGAATGGTTTAGCTAAGGAGACGAAGGAGGTAGCGATTGAAATGTATAGAGAACAGTGTAGACCCAATGAGACGATAGTTGTTTGTCATAGTGAGCCTGGTGCTTGGTATCCACCATTGTTTGAGACTCTACCTTGTCCTCCAACTGGCTACGAAGATTTCTTATCTGTGATTGGTAGAACAATGTTTGAGACTGATAGAGTCAATCCAGAGCATGTGAAGCGATGTAATCAAATGGATCATGTTTGGGTTCCTACTGATTTTCACGTCTCTTCGTTTGTACAAAGTGGGGTTGATTCATCTAAGGTTGTCAAGATTGTGCAGCCTGTAGATGTCGGTTTCTTCGATCCTTCAAAGTATAAGCCTTTGGATCTGATGGCGGTTGGGGATTTGGTTTTAGGTTCTGGGATGAAGAATGGGTTTGTGTTCTTGAGTGTGTTTAAATGGGAGCAGAGGAAAGGTTGGGATGTATTGTTGAAAGCTTACTTGAGTGAGTTTTCTGGTGAAGACAATGTTGCTCTGTTTTTGTTGACGAACGCGTATCACTCGGACAGCGATTTCGGGAACAAGATTCTTGATTTCGTAGAAGAAATGAATATAGAAGAGCCTCGGAATGGTTACCCTTTTGTGTATGTGATTGATAAACACATTGCTCAAGTTGATTTACCTCGGTTGTACAAAGCGGCTGATGCGTTTGTGTTGCCTACAAGAGGAGAAGGATGGGGACGACCTATAGTGGAAGCCATGGCTATGTCTTTGCCTGTGATCACAACAAACTGGTCAGGACCAACAGAGTATCTTACAGAGCGGAATGGTTACCCGTTGGTGGTAGAGGAGATGAGTGAAGTGAAGGAAGGTCCTTTTGAAGGGCATCAATGGGCAGAGCCATCTGTGGATAAGCTGAGGGTTCTAATGAGGCGTGTAATGAGTAACCCTGATGAGGCTAAGGTTAAAGGAAAACGTGGAAGAGATGACATGGTCAAGAATTTTGCTCCTGAGGTTGTTGCTAAGGTTGTAGCGGATCAAATAGCGAGAATCTTTGATGAGAAAATAAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

487

Amino Acids

55.59

Weight (kDa)

5.64

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_1_4 PF13692 275 - 412 1.3e-14 Glycosyl transferases group 1
Glycos_transf_1 PF00534 353 - 406 1.5e-12 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016637)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10630
fragaria_vesca FvH4_5g28400
malus_domestica MD03G1165900.v1.1
prunus_persica Prupe.4G266300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0331951
rosa_laevigata RLG00000029701
rosa_multiflora Rmu_sc0008128.1_g000008
rosa_roxburghii Rroxscaffold_4G00318590
rosa_rugosa Rorug01G0097100
rosa_samantha Rh1AG121200 Rh1BG092800 Rh1CG116000 Rh1DG127100
rosa_wichuraiana Rw1G009890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1210
AccI GTMKAC 2 cut(s) 54, 463
AccII CGCG 1 cut(s) 941
AciI CCGC 6 cut(s) 160, 251, 782, 1085, 1210, 1421
AclWI GGATC 5 cut(s) 12, 648, 743, 780, 1431
AcsI RAATTY 2 cut(s) 38, 1387
AdeI CACNNNGTG 1 cut(s) 259
AfaI GTAC 2 cut(s) 684, 1079
AfiI CCNNNNNNNGG 6 cut(s) 548, 1016, 1112, 1228, 1268, 1342
AflIII ACRYGT 1 cut(s) 939
AgsI TTSAA 5 cut(s) 179, 443, 756, 880, 1268
AjiI CACGTC 1 cut(s) 670
AjnI CCWGG 1 cut(s) 499
AleI CACNNNNGTG 1 cut(s) 378
AluBI AGCT 7 cut(s) 171, 239, 300, 308, 416, 884, 1303
AluI AGCT 7 cut(s) 171, 239, 300, 308, 416, 884, 1303
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 5 cut(s) 416, 467, 521, 587, 676
AlwI GGATC 5 cut(s) 12, 648, 743, 780, 1431
Ama87I CYCGRG 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 724
ApoI RAATTY 2 cut(s) 38, 1387
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
Asp700I GAANNNNTTC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 1187, 1259
AsuHPI GGTGA 4 cut(s) 136, 355, 392, 917
AsuII TTCGAA 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 2 cut(s) 1187, 1259
AxyI CCTNAGG 1 cut(s) 1398
BbsI GAAGAC 1 cut(s) 915
Bbv12I GWGCWC 1 cut(s) 375
BbvCI CCTCAGC 1 cut(s) 1304
BbvI GCAGC 1 cut(s) 736
BccI CCATC 8 cut(s) 56, 194, 262, 345, 374, 772, 1116, 1297
BciT130I CCWGG 1 cut(s) 501
BciVI GTATCC 1 cut(s) 522
BclI TGATCA 1 cut(s) 1167
BcoDI GTCTC 5 cut(s) 416, 467, 521, 587, 676
BfaI CTAG 3 cut(s) 188, 351, 386
BfmI CTRYAG 3 cut(s) 166, 729, 1134
BfuI GTATCC 1 cut(s) 522
BisI GCNGC 3 cut(s) 251, 725, 1086
BlsI GCNGC 3 cut(s) 252, 726, 1087
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 2 cut(s) 1187, 1259
BmeT110I CYCGRG 1 cut(s) 283
BmgBI CACGTC 1 cut(s) 670
BmgT120I GGNCC 2 cut(s) 1187, 1259
BmiI GGNNCC 2 cut(s) 273, 654
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 1081, 1282
BpiI GAAGAC 1 cut(s) 915
Bpu10I CCTNAGC 4 cut(s) 417, 1304, 1347, 1410
Bpu14I TTCGAA 1 cut(s) 358
BpuEI CTTGAG 3 cut(s) 853, 910, 1041
Bsa29I ATCGAT 1 cut(s) 65
BsaJI CCNNGG 5 cut(s) 32, 376, 1010, 1070, 1146
Bsc4I CCNNNNNNNGG 6 cut(s) 548, 1016, 1112, 1228, 1268, 1342
Bse1I ACTGG 2 cut(s) 553, 1184
Bse21I CCTNAGG 1 cut(s) 1398
Bse3DI GCAATG 1 cut(s) 1050
BseBI CCWGG 1 cut(s) 501
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 5 cut(s) 32, 376, 1010, 1070, 1146
BseGI GGATG 4 cut(s) 273, 816, 874, 1127
BseLI CCNNNNNNNGG 6 cut(s) 548, 1016, 1112, 1228, 1268, 1342
BseMI GCAATG 1 cut(s) 1050
BseMII CTCAG 4 cut(s) 128, 315, 1295, 1389
BseNI ACTGG 2 cut(s) 553, 1184
BseRI GAGGAG 2 cut(s) 1128, 1250
BseXI GCAGC 1 cut(s) 736
BsgI GTGCAG 1 cut(s) 743
Bsh1236I CGCG 1 cut(s) 941
BshVI ATCGAT 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 375
BsiHKCI CYCGRG 1 cut(s) 283
BslFI GGGAC 1 cut(s) 1140
BslI CCNNNNNNNGG 6 cut(s) 548, 1016, 1112, 1228, 1268, 1342
BsmAI GTCTC 5 cut(s) 416, 467, 521, 587, 676
BsmBI CGTCTC 3 cut(s) 416, 467, 676
BsmFI GGGAC 1 cut(s) 1140
BsoBI CYCGRG 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 375
Bsp1407I TGTACA 2 cut(s) 682, 1077
Bsp19I CCATGG 3 cut(s) 32, 376, 1146
BspACI CCGC 6 cut(s) 160, 251, 782, 1085, 1210, 1421
BspCNI CTCAG 4 cut(s) 129, 314, 1296, 1390
BspDI ATCGAT 1 cut(s) 65
BspFNI CGCG 1 cut(s) 941
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 273, 654
BspPI GGATC 5 cut(s) 12, 648, 743, 780, 1431
BspQI GCTCTTC 1 cut(s) 999
BspT104I TTCGAA 1 cut(s) 358
BsrBI CCGCTC 1 cut(s) 1210
BsrDI GCAATG 1 cut(s) 1050
BsrGI TGTACA 2 cut(s) 682, 1077
BsrI ACTGG 2 cut(s) 553, 1184
BssECI CCNNGG 5 cut(s) 32, 376, 1010, 1070, 1146
BssT1I CCWWGG 3 cut(s) 32, 376, 1146
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 154, 459
Bst6I CTCTTC 4 cut(s) 64, 679, 999, 1363
BstAUI TGTACA 2 cut(s) 682, 1077
BstBI TTCGAA 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 8 cut(s) 137, 301, 417, 705, 1304, 1347, 1398, 1410
BstDSI CCRYGG 3 cut(s) 32, 376, 1146
BstEII GGTNACC 2 cut(s) 1019, 1217
BstENI CCTNNNNNAGG 2 cut(s) 1110, 1266
BstF5I GGATG 4 cut(s) 273, 816, 874, 1127
BstFNI CGCG 1 cut(s) 941
BstMAI GTCTC 5 cut(s) 416, 467, 521, 587, 676
BstMWI GCNNNNNNNGC 3 cut(s) 168, 622, 1091
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 620
BstPI GGTNACC 2 cut(s) 1019, 1217
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 3 cut(s) 166, 729, 1134
BstUI CGCG 1 cut(s) 941
BstV1I GCAGC 1 cut(s) 736
BstV2I GAAGAC 1 cut(s) 915
BstX2I RGATCY 1 cut(s) 772
BstYI RGATCY 1 cut(s) 772
Bsu15I ATCGAT 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 1398
BsuI GTATCC 1 cut(s) 522
BsuTUI ATCGAT 1 cut(s) 65
BtgI CCRYGG 3 cut(s) 32, 376, 1146
BtgZI GCGATG 1 cut(s) 640
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 4 cut(s) 273, 816, 874, 1127
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 4 cut(s) 150, 253, 399, 464
Cac8I GCNNGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 1187, 1259
ClaI ATCGAT 1 cut(s) 65
Csp6I GTAC 2 cut(s) 683, 1078
CviAII CATG 8 cut(s) 33, 197, 377, 617, 644, 1147, 1378, 1461
CviQI GTAC 2 cut(s) 683, 1078
DdeI CTNAG 8 cut(s) 137, 301, 417, 705, 1304, 1347, 1398, 1410
DraI TTTAAA 1 cut(s) 844
DraIII CACNNNGTG 1 cut(s) 259
Eam1104I CTCTTC 4 cut(s) 64, 679, 999, 1363
EarI CTCTTC 4 cut(s) 64, 679, 999, 1363
Eco130I CCWWGG 3 cut(s) 32, 376, 1146
Eco47I GGWCC 2 cut(s) 1187, 1259
Eco81I CCTNAGG 1 cut(s) 1398
Eco88I CYCGRG 1 cut(s) 283
Eco91I GGTNACC 2 cut(s) 1019, 1217
EcoNI CCTNNNNNAGG 2 cut(s) 1110, 1266
EcoO109I RGGNCCY 1 cut(s) 1259
EcoO65I GGTNACC 2 cut(s) 1019, 1217
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 3 cut(s) 32, 376, 1146
ErhI CCWWGG 3 cut(s) 32, 376, 1146
Esp3I CGTCTC 3 cut(s) 416, 467, 676
FaeI CATG 8 cut(s) 36, 200, 380, 620, 647, 1150, 1381, 1464
FaqI GGGAC 1 cut(s) 1140
FatI CATG 8 cut(s) 32, 196, 376, 616, 643, 1146, 1377, 1460
FbaI TGATCA 1 cut(s) 1167
FblI GTMKAC 2 cut(s) 54, 463
Fnu4HI GCNGC 3 cut(s) 251, 725, 1086
FokI GGATG 4 cut(s) 280, 823, 881, 1134
Fsp4HI GCNGC 3 cut(s) 251, 725, 1086
FspBI CTAG 3 cut(s) 188, 351, 386
GluI GCNGC 3 cut(s) 251, 725, 1086
Hin1II CATG 8 cut(s) 36, 200, 380, 620, 647, 1150, 1381, 1464
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HindIII AAGCTT 2 cut(s) 306, 882
HinfI GANTC 8 cut(s) 141, 360, 389, 529, 603, 698, 973, 1437
HphI GGTGA 4 cut(s) 136, 355, 392, 917
Hpy166II GTNNAC 4 cut(s) 55, 157, 464, 933
Hpy188I TCNGA 6 cut(s) 138, 223, 304, 777, 952, 1014
Hpy8I GTNNAC 4 cut(s) 55, 157, 464, 933
HpyAV CCTTC 9 cut(s) 86, 157, 194, 421, 762, 1112, 1246, 1250, 1262
HpyCH4III ACNGT 2 cut(s) 154, 459
HpyCH4IV ACGT 3 cut(s) 318, 669, 1363
HpyCH4V TGCA 1 cut(s) 724
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 622, 1091
HpyF3I CTNAG 8 cut(s) 137, 301, 417, 705, 1304, 1347, 1398, 1410
HpySE526I ACGT 3 cut(s) 318, 669, 1363
Hsp92II CATG 8 cut(s) 36, 200, 380, 620, 647, 1150, 1381, 1464
Ksp22I TGATCA 1 cut(s) 1167
LguI GCTCTTC 1 cut(s) 999
LmnI GCTCC 3 cut(s) 277, 850, 1399
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 2 cut(s) 1081, 1282
MaeI CTAG 3 cut(s) 188, 351, 386
MaeII ACGT 3 cut(s) 318, 669, 1363
MaeIII GTNAC 5 cut(s) 293, 332, 1019, 1217, 1331
MbiI CCGCTC 1 cut(s) 1210
MflI RGATCY 1 cut(s) 772
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 3 cut(s) 38, 179, 1387
MluI ACGCGT 1 cut(s) 939
MlyI GAGTC 2 cut(s) 523, 612
MmeI TCCRAC 1 cut(s) 569
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 2 cut(s) 843, 1353
MslI CAYNNNNRTG 2 cut(s) 378, 1151
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 941
MwoI GCNNNNNNNGC 3 cut(s) 168, 622, 1091
NcoI CCATGG 3 cut(s) 32, 376, 1146
NlaIII CATG 8 cut(s) 36, 200, 380, 620, 647, 1150, 1381, 1464
NlaIV GGNNCC 2 cut(s) 273, 654
NspI RCATGY 1 cut(s) 620
NspV TTCGAA 1 cut(s) 358
OliI CACNNNNGTG 1 cut(s) 378
PaeR7I CTCGAG 1 cut(s) 283
PagI TCATGA 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 999
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 744
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 6 cut(s) 141, 360, 389, 698, 973, 1437
PflFI GACNNNGTC 1 cut(s) 1379
PkrI GCNGC 3 cut(s) 252, 726, 1087
PleI GAGTC 2 cut(s) 523, 611
PpsI GAGTC 2 cut(s) 523, 611
PpuMI RGGWCCY 1 cut(s) 1259
Psp5II RGGWCCY 1 cut(s) 1259
Psp6I CCWGG 1 cut(s) 499
PspEI GGTNACC 2 cut(s) 1019, 1217
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 2 cut(s) 273, 654
PspPI GGNCC 2 cut(s) 1187, 1259
PspPPI RGGWCCY 1 cut(s) 1259
PsuI RGATCY 1 cut(s) 772
PsyI GACNNNGTC 1 cut(s) 1379
RsaI GTAC 2 cut(s) 684, 1079
RsaNI GTAC 2 cut(s) 683, 1078
RseI CAYNNNNRTG 2 cut(s) 378, 1151
SapI GCTCTTC 1 cut(s) 999
SaqAI TTAA 2 cut(s) 843, 1353
SatI GCNGC 3 cut(s) 251, 725, 1086
Sau96I GGNCC 2 cut(s) 1187, 1259
SchI GAGTC 2 cut(s) 523, 612
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 2 cut(s) 1081, 1282
SfcI CTRYAG 3 cut(s) 166, 729, 1134
Sfr274I CTCGAG 1 cut(s) 283
SfuI TTCGAA 1 cut(s) 358
SinI GGWCC 2 cut(s) 1187, 1259
SlaI CTCGAG 1 cut(s) 283
SmiMI CAYNNNNRTG 2 cut(s) 378, 1151
SmlI CTYRAG 4 cut(s) 283, 832, 889, 1056
SmoI CTYRAG 4 cut(s) 283, 832, 889, 1056
Sse9I AATT 3 cut(s) 38, 179, 1387
SsiI CCGC 6 cut(s) 160, 251, 782, 1085, 1210, 1421
SspMI CTAG 3 cut(s) 188, 351, 386
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 3 cut(s) 32, 376, 1146
TaaI ACNGT 2 cut(s) 154, 459
TaiI ACGT 3 cut(s) 321, 672, 1366
TaqI TCGA 7 cut(s) 19, 65, 86, 284, 358, 369, 747
TasI AATT 3 cut(s) 38, 179, 1387
TatI WGTACW 2 cut(s) 682, 1077
TauI GCSGC 2 cut(s) 253, 1088
TfiI GAWTC 6 cut(s) 141, 360, 389, 698, 973, 1437
Tru1I TTAA 2 cut(s) 843, 1353
Tru9I TTAA 2 cut(s) 843, 1353
TscAI CASTG 4 cut(s) 157, 260, 399, 464
TseI GCWGC 1 cut(s) 724
TspDTI ATGAA 5 cut(s) 51, 185, 690, 827, 1010
TspRI CASTG 4 cut(s) 157, 260, 399, 464
Tth111I GACNNNGTC 1 cut(s) 1379
VpaK11BI GGWCC 2 cut(s) 1187, 1259
XagI CCTNNNNNAGG 2 cut(s) 1110, 1266
XapI RAATTY 2 cut(s) 38, 1387
XbaI TCTAGA 1 cut(s) 385
XceI RCATGY 1 cut(s) 620
XhoI CTCGAG 1 cut(s) 283
XmiI GTMKAC 2 cut(s) 54, 463
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 3 cut(s) 188, 351, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.