MD03G1165900.v1.1

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016637
Physical Location & Seq
Forward (+)
22079459 .. 22080955
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1165900.v1.1.491

Sequence Viewer

Length: 1497 bp
ATGAATTTGCGCGAAAACCAACAACCCATTAACCGACCACAAGCCAATCGAACCCTGAAATTGAAACCCTATGCATTCTACTTATCATCCATCCTAATTCTCGTCCTTACAATCTCCTTCAATTTCCCCAAAACAAACTTCCTCAAAACCCAACTCCTAAAGCACACATTCTCATCACACCCCACCACCATTGTCCAAAACCTGTTCGGCTTTCTTCATCCAATTAAAAAACTCCAACAAACCCAGTCGATAAATCCTACTCCCAAGCCCCCCAACTGTGTTCTATGGATGGCTCCTTTCCTTTCAGGTGGTGGGTACAGTTCAGAAGCTTGGTCTTACATTTTATCCCTTTACCAACACTCGAAAAACCCGAATTTTCAAATGGCTATCGAGCAACACGGTGATCAGGAATCCTTGGAATTCTGGGAGGGTTTGCCTGAATATGTCAGGAAATTAGCAATTGGGCTTTACAACACACAATGTAGTATGAAGGACACCGTGGTTATTTGTCACAGTGAGCCCGGTGCTTGGAACCCGCCTTTGTTCGAAACACTGCCTTGCCCACCAGCTGCTTACCAAAAGTTCAAGTCCGTCATTGGACGGACCATGTTTGAAACCGATAGAGTGAACGCGGAGCATGTGAAGCGCTGTAATCGGATGGATTATGTTTGGGTTCCTACGCAGTTTCATGTGTCGAGTTTTGTACAAAGCGGGGTTGATCCTTCTAAGGTTGTGAAAATTGTGCAGCCTATTGATGTTAAGTTCTTTGATCCGCTTGCGTATGAGCAGTTGAATCTTGCGTCTGTAGGGAAGTTGATTATGGGTAAGGCAACGCAGGACTTGGAAACGAAGAAGAAATTTGTGTTTATGAGTGTGTTTAAGTGGGAGTACAGGAAAGGATGGGATGTGTTGTTGAAATCATATTTGGAAGAGTTCAGTGAAGCAGATGGCGTTGCTTTGTATCTTTTGACAAATCCTTATCACTCTGATAGAGATTTTGGGAATAAGATAGTGGAGTTTGCGGAGAAATCTGGAATCGAAATGCCAGTGACCGGTTGGGCTCCAGTTTATGTGATGGACACTCACATAGCTCAAACTGATTTGCCGCGAGTGTACAAGGCAGCTGATGCATTTGTTCTTCCATCAAGGGGGGAAGGGTGGGGAAGGCCCCTCGTTGAAGCGATGGCAATGTCGTTGCCCGTGATTGCCACAAATTGGTCTGGGCCTACGGAATATCTGACTGCAGAGAATAGTTATCCATTGCCGGTGGACAGGATGAGTGAAGTAATGGAAGGGCCTTTCAGAGGACATCTCTGGGCAGAACCTTCGGTTAGCAAGCTTCGTGTTCTAATGAGGCGCGTGGTGAATAATGTCGAGGAAGCCAAGGTAAAAGGGAAAAAAGCAAGAGAAGACATGATCAAAAGGTTTTCTCCTGAGATTGTTGCAGATATCGTTACAAAACATGTACAACATATACTTCAGAAGGTGAATCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

499

Amino Acids

56.9

Weight (kDa)

8.97

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_1_4 PF13692 285 - 415 2.7e-15 Glycosyl transferases group 1
Glycos_transf_1 PF00534 364 - 416 1.2e-13 Glycosyl transferases group 1
GT4-conflict PF20706 365 - 482 1.5e-06 Family 4 Glycosyltransferase in conflict systems
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016637)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10630
fragaria_vesca FvH4_5g28400
malus_domestica MD03G1165900.v1.1
prunus_persica Prupe.4G266300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0331951
rosa_laevigata RLG00000029701
rosa_multiflora Rmu_sc0008128.1_g000008
rosa_roxburghii Rroxscaffold_4G00318590
rosa_rugosa Rorug01G0097100
rosa_samantha Rh1AG121200 Rh1BG092800 Rh1CG116000 Rh1DG127100
rosa_wichuraiana Rw1G009890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1215
AccII CGCG 4 cut(s) 12, 632, 1108, 1359
AciI CCGC 6 cut(s) 536, 632, 711, 773, 1022, 1106
AclWI GGATC 2 cut(s) 713, 764
AcsI RAATTY 4 cut(s) 4, 373, 419, 857
AcuI CTGAAG 1 cut(s) 1463
AfaI GTAC 5 cut(s) 317, 705, 890, 1115, 1467
AfeI AGCGCT 1 cut(s) 647
AfiI CCNNNNNNNGG 5 cut(s) 528, 1052, 1148, 1215, 1304
AflIII ACRYGT 1 cut(s) 1462
AgeI ACCGGT 1 cut(s) 1052
AgsI TTSAA 8 cut(s) 64, 121, 380, 586, 614, 793, 916, 1178
AjuI GAANNNNNNNTTGG 4 cut(s) 122, 154, 908, 940
AluBI AGCT 5 cut(s) 329, 569, 1091, 1124, 1339
AluI AGCT 5 cut(s) 329, 569, 1091, 1124, 1339
AlwI GGATC 2 cut(s) 713, 764
Aor51HI AGCGCT 1 cut(s) 647
AoxI GGCC 3 cut(s) 1166, 1223, 1295
ApeKI GCWGC 3 cut(s) 569, 745, 1121
ApoI RAATTY 4 cut(s) 4, 373, 419, 857
AsiGI ACCGGT 1 cut(s) 1052
AspLEI GCGC 3 cut(s) 12, 648, 1359
AspS9I GGNCC 4 cut(s) 603, 1167, 1223, 1295
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 2 cut(s) 413, 1375
AsuII TTCGAA 1 cut(s) 546
AvaII GGWCC 1 cut(s) 603
BanII GRGCYC 2 cut(s) 522, 1063
BbsI GAAGAC 1 cut(s) 1416
BbvI GCAGC 3 cut(s) 556, 757, 1133
BccI CCATC 8 cut(s) 98, 283, 652, 894, 941, 1069, 1150, 1177
BcgI CGANNNNNNTGC 2 cut(s) 1308, 1342
BclI TGATCA 2 cut(s) 403, 1416
BcnI CCSGG 1 cut(s) 522
BfmI CTRYAG 2 cut(s) 804, 1242
BfoI RGCGCY 1 cut(s) 649
BisI GCNGC 4 cut(s) 570, 746, 1106, 1122
BlsI GCNGC 4 cut(s) 571, 747, 1107, 1123
Bme1390I CCNGG 1 cut(s) 522
Bme18I GGWCC 1 cut(s) 603
BmgT120I GGNCC 4 cut(s) 603, 1167, 1223, 1295
BmiI GGNNCC 5 cut(s) 294, 533, 675, 1062, 1169
BmrFI CCNGG 1 cut(s) 522
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 1117
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 1416
BplI GAGNNNNNCTC 2 cut(s) 1296, 1328
BpmI CTGGAG 1 cut(s) 1047
Bpu14I TTCGAA 1 cut(s) 546
BpuMI CCSGG 1 cut(s) 522
BsaJI CCNNGG 3 cut(s) 414, 498, 1383
BsaWI WCCGGW 1 cut(s) 1052
Bsc4I CCNNNNNNNGG 5 cut(s) 528, 1052, 1148, 1215, 1304
Bse118I RCCGGY 2 cut(s) 1052, 1264
Bse1I ACTGG 3 cut(s) 244, 1046, 1064
Bse3DI GCAATG 2 cut(s) 1194, 1259
BseDI CCNNGG 3 cut(s) 414, 498, 1383
BseGI GGATG 8 cut(s) 86, 90, 217, 294, 663, 905, 910, 1281
BseLI CCNNNNNNNGG 5 cut(s) 528, 1052, 1148, 1215, 1304
BseMI GCAATG 2 cut(s) 1194, 1259
BseMII CTCAG 1 cut(s) 1425
BseNI ACTGG 3 cut(s) 244, 1046, 1064
BseXI GCAGC 3 cut(s) 556, 757, 1133
BsgI GTGCAG 1 cut(s) 764
Bsh1236I CGCG 4 cut(s) 12, 632, 1108, 1359
BshFI GGCC 3 cut(s) 1168, 1225, 1297
BshTI ACCGGT 1 cut(s) 1052
BsiSI CCGG 3 cut(s) 522, 1053, 1265
BslI CCNNNNNNNGG 5 cut(s) 528, 1052, 1148, 1215, 1304
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 3 cut(s) 1168, 1225, 1297
Bsp119I TTCGAA 1 cut(s) 546
Bsp1286I GDGCHC 2 cut(s) 522, 1063
Bsp1407I TGTACA 3 cut(s) 703, 1113, 1465
Bsp143I GATC 4 cut(s) 403, 718, 769, 1416
BspACI CCGC 6 cut(s) 536, 632, 711, 773, 1022, 1106
BspANI GGCC 3 cut(s) 1168, 1225, 1297
BspCNI CTCAG 1 cut(s) 1426
BspFNI CGCG 4 cut(s) 12, 632, 1108, 1359
BspLI GGNNCC 5 cut(s) 294, 533, 675, 1062, 1169
BspMAI CTGCAG 1 cut(s) 1246
BspPI GGATC 2 cut(s) 713, 764
BspT104I TTCGAA 1 cut(s) 546
BsrDI GCAATG 2 cut(s) 1194, 1259
BsrFI RCCGGY 2 cut(s) 1052, 1264
BsrGI TGTACA 3 cut(s) 703, 1113, 1465
BsrI ACTGG 3 cut(s) 244, 1046, 1064
BssAI RCCGGY 2 cut(s) 1052, 1264
BssECI CCNNGG 3 cut(s) 414, 498, 1383
BssMI GATC 4 cut(s) 403, 718, 769, 1416
BssT1I CCWWGG 2 cut(s) 414, 1383
Bst4CI ACNGT 5 cut(s) 278, 320, 401, 499, 515
Bst6I CTCTTC 1 cut(s) 924
BstAPI GCANNNNNTGC 1 cut(s) 1127
BstAUI TGTACA 3 cut(s) 703, 1113, 1465
BstBI TTCGAA 1 cut(s) 546
BstC8I GCNNGC 2 cut(s) 777, 1337
BstDEI CTNAG 2 cut(s) 726, 1434
BstDSI CCRYGG 1 cut(s) 498
BstENI CCTNNNNNAGG 1 cut(s) 1302
BstF5I GGATG 8 cut(s) 86, 90, 217, 294, 663, 905, 910, 1281
BstFNI CGCG 4 cut(s) 12, 632, 1108, 1359
BstH2I RGCGCY 1 cut(s) 649
BstHHI GCGC 3 cut(s) 12, 648, 1359
BstKTI GATC 4 cut(s) 406, 721, 772, 1419
BstMBI GATC 4 cut(s) 403, 718, 769, 1416
BstMWI GCNNNNNNNGC 2 cut(s) 643, 1127
BstNSI RCATGY 2 cut(s) 641, 1466
BstSCI CCNGG 1 cut(s) 520
BstSFI CTRYAG 2 cut(s) 804, 1242
BstUI CGCG 4 cut(s) 12, 632, 1108, 1359
BstV1I GCAGC 3 cut(s) 556, 757, 1133
BstV2I GAAGAC 1 cut(s) 1416
BsuRI GGCC 3 cut(s) 1168, 1225, 1297
BtgI CCRYGG 1 cut(s) 498
BtgZI GCGATG 1 cut(s) 1196
BtsCI GGATG 8 cut(s) 86, 90, 217, 294, 663, 905, 910, 1281
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 4 cut(s) 520, 551, 943, 1053
Cac8I GCNNGC 2 cut(s) 777, 1337
CfoI GCGC 3 cut(s) 12, 648, 1359
Cfr10I RCCGGY 2 cut(s) 1052, 1264
Cfr13I GGNCC 4 cut(s) 603, 1167, 1223, 1295
CseI GACGC 1 cut(s) 789
Csp6I GTAC 5 cut(s) 316, 704, 889, 1114, 1466
CspAI ACCGGT 1 cut(s) 1052
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 5 cut(s) 607, 638, 689, 1414, 1463
CviQI GTAC 5 cut(s) 316, 704, 889, 1114, 1466
DdeI CTNAG 2 cut(s) 726, 1434
DpnI GATC 4 cut(s) 405, 720, 771, 1418
DpnII GATC 4 cut(s) 403, 718, 769, 1416
Eam1104I CTCTTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 924
Eco130I CCWWGG 2 cut(s) 414, 1383
Eco24I GRGCYC 2 cut(s) 522, 1063
Eco32I GATATC 1 cut(s) 1450
Eco47I GGWCC 1 cut(s) 603
Eco47III AGCGCT 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 1463
EcoNI CCTNNNNNAGG 1 cut(s) 1302
EcoO109I RGGNCCY 2 cut(s) 1167, 1295
EcoRI GAATTC 1 cut(s) 419
EcoRV GATATC 1 cut(s) 1450
EcoT14I CCWWGG 2 cut(s) 414, 1383
EcoT22I ATGCAT 2 cut(s) 76, 1132
EcoT38I GRGCYC 2 cut(s) 522, 1063
ErhI CCWWGG 2 cut(s) 414, 1383
FaeI CATG 5 cut(s) 610, 641, 692, 1417, 1466
FatI CATG 5 cut(s) 606, 637, 688, 1413, 1462
FauI CCCGC 2 cut(s) 543, 704
FbaI TGATCA 2 cut(s) 403, 1416
Fnu4HI GCNGC 4 cut(s) 570, 746, 1106, 1122
FokI GGATG 8 cut(s) 73, 77, 204, 301, 670, 912, 917, 1288
FriOI GRGCYC 2 cut(s) 522, 1063
Fsp4HI GCNGC 4 cut(s) 570, 746, 1106, 1122
GlaI GCGC 3 cut(s) 11, 647, 1358
GluI GCNGC 4 cut(s) 570, 746, 1106, 1122
GsuI CTGGAG 1 cut(s) 1047
HaeII RGCGCY 1 cut(s) 649
HaeIII GGCC 3 cut(s) 1168, 1225, 1297
HapII CCGG 3 cut(s) 522, 1053, 1265
HgaI GACGC 1 cut(s) 789
HhaI GCGC 3 cut(s) 12, 648, 1359
Hin1II CATG 5 cut(s) 610, 641, 692, 1417, 1466
Hin6I GCGC 3 cut(s) 10, 646, 1357
HinP1I GCGC 3 cut(s) 10, 646, 1357
HindIII AAGCTT 2 cut(s) 327, 1337
HinfI GANTC 4 cut(s) 410, 793, 1035, 1489
HpaII CCGG 3 cut(s) 522, 1053, 1265
HphI GGTGA 2 cut(s) 413, 1375
Hpy166II GTNNAC 3 cut(s) 628, 1114, 1270
Hpy188I TCNGA 6 cut(s) 325, 657, 988, 1239, 1304, 1482
Hpy188III TCNNGA 4 cut(s) 407, 448, 1032, 1433
Hpy8I GTNNAC 3 cut(s) 628, 1114, 1270
HpyAV CCTTC 8 cut(s) 127, 484, 732, 1148, 1158, 1286, 1335, 1477
HpyCH4III ACNGT 5 cut(s) 278, 320, 401, 499, 515
HpyCH4V TGCA 5 cut(s) 74, 745, 1130, 1244, 1445
HpyF10VI GCNNNNNNNGC 2 cut(s) 643, 1127
HpyF3I CTNAG 2 cut(s) 726, 1434
Hsp92II CATG 5 cut(s) 610, 641, 692, 1417, 1466
HspAI GCGC 3 cut(s) 10, 646, 1357
Ksp22I TGATCA 2 cut(s) 403, 1416
Kzo9I GATC 4 cut(s) 403, 718, 769, 1416
LmnI GCTCC 3 cut(s) 298, 634, 1066
Lsp1109I GCAGC 3 cut(s) 556, 757, 1133
LweI GCATC 1 cut(s) 1117
MaeIII GTNAC 3 cut(s) 509, 1048, 1453
MalI GATC 4 cut(s) 405, 720, 771, 1418
MboI GATC 4 cut(s) 403, 718, 769, 1416
MboII GAAGA 6 cut(s) 206, 862, 865, 941, 1130, 1421
MfeI CAATTG 1 cut(s) 459
MhlI GDGCHC 2 cut(s) 522, 1063
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 6 cut(s) 152, 421, 1181, 1298, 1347, 1369
Mph1103I ATGCAT 2 cut(s) 76, 1132
MseI TTAA 4 cut(s) 30, 225, 759, 879
MspA1I CMGCKG 2 cut(s) 569, 1124
MspI CCGG 3 cut(s) 522, 1053, 1265
MspR9I CCNGG 1 cut(s) 522
MunI CAATTG 1 cut(s) 459
Mva1269I GAATGC 1 cut(s) 74
MvnI CGCG 4 cut(s) 12, 632, 1108, 1359
MwoI GCNNNNNNNGC 2 cut(s) 643, 1127
NciI CCSGG 1 cut(s) 522
NdeII GATC 4 cut(s) 403, 718, 769, 1416
NlaIII CATG 5 cut(s) 610, 641, 692, 1417, 1466
NlaIV GGNNCC 5 cut(s) 294, 533, 675, 1062, 1169
NmuCI GTSAC 2 cut(s) 509, 1048
NsiI ATGCAT 2 cut(s) 76, 1132
NspI RCATGY 2 cut(s) 641, 1466
NspV TTCGAA 1 cut(s) 546
PciI ACATGT 1 cut(s) 1462
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 4 cut(s) 410, 793, 1035, 1489
PflMI CCANNNNNTGG 1 cut(s) 1215
PinAI ACCGGT 1 cut(s) 1052
PkrI GCNGC 4 cut(s) 571, 747, 1107, 1123
PscI ACATGT 1 cut(s) 1462
PspN4I GGNNCC 5 cut(s) 294, 533, 675, 1062, 1169
PspPI GGNCC 4 cut(s) 603, 1167, 1223, 1295
PstI CTGCAG 1 cut(s) 1246
PvuII CAGCTG 2 cut(s) 569, 1124
RsaI GTAC 5 cut(s) 317, 705, 890, 1115, 1467
RsaNI GTAC 5 cut(s) 316, 704, 889, 1114, 1466
SaqAI TTAA 4 cut(s) 30, 225, 759, 879
SatI GCNGC 4 cut(s) 570, 746, 1106, 1122
Sau3AI GATC 4 cut(s) 403, 718, 769, 1416
Sau96I GGNCC 4 cut(s) 603, 1167, 1223, 1295
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 2 cut(s) 522, 1063
SfaNI GCATC 1 cut(s) 1117
SfcI CTRYAG 2 cut(s) 804, 1242
SfuI TTCGAA 1 cut(s) 546
SinI GGWCC 1 cut(s) 603
SsiI CCGC 6 cut(s) 536, 632, 711, 773, 1022, 1106
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 2 cut(s) 414, 1383
TaaI ACNGT 5 cut(s) 278, 320, 401, 499, 515
TaqI TCGA 8 cut(s) 49, 248, 362, 390, 546, 695, 1038, 1374
TatI WGTACW 4 cut(s) 703, 888, 1113, 1465
TauI GCSGC 1 cut(s) 1108
TfiI GAWTC 4 cut(s) 410, 793, 1035, 1489
Tru1I TTAA 4 cut(s) 30, 225, 759, 879
Tru9I TTAA 4 cut(s) 30, 225, 759, 879
TscAI CASTG 4 cut(s) 520, 558, 943, 1053
TseFI GTSAC 2 cut(s) 509, 1048
TseI GCWGC 3 cut(s) 569, 745, 1121
Tsp45I GTSAC 2 cut(s) 509, 1048
TspDTI ATGAA 4 cut(s) 17, 206, 503, 677
TspGWI ACGGA 3 cut(s) 580, 616, 1244
TspRI CASTG 4 cut(s) 520, 558, 943, 1053
Van91I CCANNNNNTGG 1 cut(s) 1215
VpaK11BI GGWCC 1 cut(s) 603
XagI CCTNNNNNAGG 1 cut(s) 1302
XapI RAATTY 4 cut(s) 4, 373, 419, 857
XceI RCATGY 2 cut(s) 641, 1466
XcmI CCANNNNNNNNNTGG 1 cut(s) 1053
Zsp2I ATGCAT 2 cut(s) 76, 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.