Rroxscaffold_4G00318590

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016637
Physical Location & Seq
Reverse (-)
44810514 .. 44812107
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318590.1

Sequence Viewer

Length: 1194 bp
ATGGCTCCTTTTCTCTCGGGTGGTGGGTACAGTTCAGAAGGTTGGTCATATATTTTAGCACTCTATGAACAGAATAGAACCCGCAGTTTTAGAATGGCTATTGAGCAACATGGTGATCTAGAGTCCCTTGAGTTCTGGGAGGGATTGCCTAAATATATGAAAGATTTGGCAATTGAGCTTTACCACACAAAATGTAATTTGAAAGAGACGATAGTCATATGTCACAGTGAGCCTGGTGCATGGAACCCTCCATTGTTTGAAACTCTCCCTTGCCCACCAACTGCTTATGAAAACTTCAAGTCTGTGATTGGTCGGACCATGTTTGAAACTGATAGGGTGAGTCTCGAGCATGTGAAGCGCTGTAACAAAATGGATTATGTGTGGGTTCCTACTGAATTTCATGTATCTACATTCATAGAAAGTGGGGTTGATCCATCTAAGGTGGTCAAAATTGTGCAGCCTATTGATGTGGAGTTCTTTGATCCAGTTGAGTATGAGCCATTAAATCTTGCTTCTATAGGGAAATTGGTCATGGGGAAGACAACACATAACTCAAAATTTGTGTTTATGAGCATTTTTAAGTGGGAATATAGGAAAGGATGGGATGTGTTACTGAAATCATATTTGGAAGAATACACTGCAGCAGACGGGGTTGGTTTATATCTTTTAACAAATCCATATCACTCGGATAAAAATTTCAGCAATAAGATAGTCGAGTTTGTGCAGAAATCTGGAATAGAAAAACCAGTGACTGGTTGGGCTCCAGTTTATGTGATTGACACTCATATACCCCAATCTGATTTGCCTCGAATATACAAGGCAGCTGATGCATTTGTTCTTCCATCAAGAGGGGAAGGGTGGGGAAGGCCTCTTGTAGAAGCTATGGCAATGTCGTTGCCAGTGATTGCCACAAATTGGTCGGGACCAACAGAGTATTTGACCGAAGAGAATAGCTATCCATTGATAGTGGATAGGATGAGTGAAGTAATGGAAGGGCCTTTCAAAGGACATCTCTGGGCAGAACCTTCTGTTACTAAGCTTCGGGTGCTAATGAGGCATGTAATGGATAATGTCGACGAAGCCAAGGCCAAAGGAAGAAGAGCAAGGGAAGACATGATCGCCAAGTTTGCTCCGGAGATTGTTGCAGATATTGTTATCAAACATGTACAAAACATATTTAAAAAGATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

397

Amino Acids

45.39

Weight (kDa)

5.74

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_1_4 PF13692 186 - 318 6.4e-15 Glycosyl transferases group 1
Glycos_transf_1 PF00534 263 - 317 2.2e-14 Glycosyl transferases group 1
GT4-conflict PF20706 268 - 377 3.2e-07 Family 4 Glycosyltransferase in conflict systems
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016637)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10630
fragaria_vesca FvH4_5g28400
malus_domestica MD03G1165900.v1.1
prunus_persica Prupe.4G266300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0331951
rosa_laevigata RLG00000029701
rosa_multiflora Rmu_sc0008128.1_g000008
rosa_roxburghii Rroxscaffold_4G00318590
rosa_rugosa Rorug01G0097100
rosa_samantha Rh1AG121200 Rh1BG092800 Rh1CG116000 Rh1DG127100
rosa_wichuraiana Rw1G009890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 752, 915
AccI GTMKAC 1 cut(s) 1074
AccIII TCCGGA 1 cut(s) 1132
AciI CCGC 1 cut(s) 82
AclWI GGATC 2 cut(s) 425, 476
AcsI RAATTY 3 cut(s) 395, 557, 694
AfaI GTAC 2 cut(s) 29, 1167
AfeI AGCGCT 1 cut(s) 359
AfiI CCNNNNNNNGG 4 cut(s) 752, 848, 915, 1004
AflIII ACRYGT 1 cut(s) 1162
AgsI TTSAA 5 cut(s) 202, 260, 298, 326, 1003
AjnI CCWGG 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AluBI AGCT 5 cut(s) 178, 824, 881, 954, 1039
AluI AGCT 5 cut(s) 178, 824, 881, 954, 1039
Alw26I GTCTC 2 cut(s) 200, 347
AlwI GGATC 2 cut(s) 425, 476
AlwNI CAGNNNCTG 1 cut(s) 752
Ama87I CYCGRG 2 cut(s) 16, 344
Aor13HI TCCGGA 1 cut(s) 1132
Aor51HI AGCGCT 1 cut(s) 359
AoxI GGCC 3 cut(s) 866, 995, 1086
ApeKI GCWGC 3 cut(s) 457, 641, 821
ApoI RAATTY 3 cut(s) 395, 557, 694
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 3 cut(s) 315, 923, 995
AsuHPI GGTGA 2 cut(s) 125, 349
AvaI CYCGRG 2 cut(s) 16, 344
AvaII GGWCC 2 cut(s) 315, 923
BanII GRGCYC 1 cut(s) 763
BbsI GAAGAC 2 cut(s) 545, 1116
BbvI GCAGC 3 cut(s) 469, 653, 833
BccI CCATC 4 cut(s) 442, 594, 850, 1180
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 200, 347
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 2 cut(s) 516, 639
BfoI RGCGCY 1 cut(s) 361
BisI GCNGC 3 cut(s) 458, 642, 822
BlsI GCNGC 3 cut(s) 459, 643, 823
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 2 cut(s) 315, 923
BmeT110I CYCGRG 2 cut(s) 16, 344
BmgT120I GGNCC 3 cut(s) 315, 923, 995
BmiI GGNNCC 5 cut(s) 6, 245, 387, 762, 924
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 817
BoxI GACNNNNGTC 1 cut(s) 212
BpiI GAAGAC 2 cut(s) 545, 1116
BpmI CTGGAG 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 1083
BsaWI WCCGGW 1 cut(s) 1132
Bsc4I CCNNNNNNNGG 4 cut(s) 752, 848, 915, 1004
Bse1I ACTGG 5 cut(s) 485, 746, 757, 764, 899
Bse3DI GCAATG 1 cut(s) 894
BseAI TCCGGA 1 cut(s) 1132
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 1083
BseGI GGATG 3 cut(s) 605, 610, 981
BseLI CCNNNNNNNGG 4 cut(s) 752, 848, 915, 1004
BseMI GCAATG 1 cut(s) 894
BseNI ACTGG 5 cut(s) 485, 746, 757, 764, 899
BseXI GCAGC 3 cut(s) 469, 653, 833
BsgI GTGCAG 2 cut(s) 476, 743
BshFI GGCC 3 cut(s) 868, 997, 1088
BsiHKCI CYCGRG 2 cut(s) 16, 344
BsiSI CCGG 1 cut(s) 1133
BslFI GGGAC 2 cut(s) 109, 936
BslI CCNNNNNNNGG 4 cut(s) 752, 848, 915, 1004
BsmAI GTCTC 2 cut(s) 200, 347
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 2 cut(s) 109, 936
BsnI GGCC 3 cut(s) 868, 997, 1088
BsoBI CYCGRG 2 cut(s) 16, 344
Bsp1286I GDGCHC 1 cut(s) 763
Bsp13I TCCGGA 1 cut(s) 1132
Bsp1407I TGTACA 1 cut(s) 1165
Bsp143I GATC 4 cut(s) 115, 430, 481, 1116
BspACI CCGC 1 cut(s) 82
BspANI GGCC 3 cut(s) 868, 997, 1088
BspEI TCCGGA 1 cut(s) 1132
BspLI GGNNCC 5 cut(s) 6, 245, 387, 762, 924
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 2 cut(s) 425, 476
BspQI GCTCTTC 1 cut(s) 1093
BsrDI GCAATG 1 cut(s) 894
BsrGI TGTACA 1 cut(s) 1165
BsrI ACTGG 5 cut(s) 485, 746, 757, 764, 899
BssECI CCNNGG 1 cut(s) 1083
BssMI GATC 4 cut(s) 115, 430, 481, 1116
BssT1I CCWWGG 1 cut(s) 1083
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 32, 227
Bst6I CTCTTC 2 cut(s) 939, 1093
BstAPI GCANNNNNTGC 1 cut(s) 827
BstAUI TGTACA 1 cut(s) 1165
BstDEI CTNAG 2 cut(s) 438, 1035
BstENI CCTNNNNNAGG 1 cut(s) 1002
BstF5I GGATG 3 cut(s) 605, 610, 981
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 4 cut(s) 118, 433, 484, 1119
BstMAI GTCTC 2 cut(s) 200, 347
BstMBI GATC 4 cut(s) 115, 430, 481, 1116
BstMWI GCNNNNNNNGC 5 cut(s) 355, 827, 1045, 1054, 1127
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 3 cut(s) 353, 1061, 1166
BstPAI GACNNNNGTC 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 2 cut(s) 516, 639
BstV1I GCAGC 3 cut(s) 469, 653, 833
BstV2I GAAGAC 2 cut(s) 545, 1116
BsuRI GGCC 3 cut(s) 868, 997, 1088
BtsCI GGATG 3 cut(s) 605, 610, 981
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 4 cut(s) 232, 636, 753, 906
CaiI CAGNNNCTG 1 cut(s) 752
CfoI GCGC 1 cut(s) 360
Cfr13I GGNCC 3 cut(s) 315, 923, 995
Csp6I GTAC 2 cut(s) 28, 1166
CviAII CATG 9 cut(s) 110, 240, 319, 350, 401, 532, 1058, 1114, 1163
CviQI GTAC 2 cut(s) 28, 1166
DdeI CTNAG 2 cut(s) 438, 1035
DpnI GATC 4 cut(s) 117, 432, 483, 1118
DpnII GATC 4 cut(s) 115, 430, 481, 1116
DraI TTTAAA 1 cut(s) 1180
Eam1104I CTCTTC 2 cut(s) 939, 1093
EarI CTCTTC 2 cut(s) 939, 1093
Eco130I CCWWGG 1 cut(s) 1083
Eco147I AGGCCT 1 cut(s) 868
Eco24I GRGCYC 1 cut(s) 763
Eco47I GGWCC 2 cut(s) 315, 923
Eco47III AGCGCT 1 cut(s) 359
Eco88I CYCGRG 2 cut(s) 16, 344
EcoNI CCTNNNNNAGG 1 cut(s) 1002
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 1083
EcoT22I ATGCAT 1 cut(s) 832
EcoT38I GRGCYC 1 cut(s) 763
ErhI CCWWGG 1 cut(s) 1083
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 9 cut(s) 113, 243, 322, 353, 404, 535, 1061, 1117, 1166
FaqI GGGAC 2 cut(s) 109, 936
FatI CATG 9 cut(s) 109, 239, 318, 349, 400, 531, 1057, 1113, 1162
FauI CCCGC 1 cut(s) 89
FauNDI CATATG 1 cut(s) 218
FblI GTMKAC 1 cut(s) 1074
Fnu4HI GCNGC 3 cut(s) 458, 642, 822
FokI GGATG 3 cut(s) 612, 617, 988
FriOI GRGCYC 1 cut(s) 763
Fsp4HI GCNGC 3 cut(s) 458, 642, 822
FspBI CTAG 1 cut(s) 119
GlaI GCGC 1 cut(s) 359
GluI GCNGC 3 cut(s) 458, 642, 822
GsuI CTGGAG 1 cut(s) 747
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 3 cut(s) 868, 997, 1088
HapII CCGG 1 cut(s) 1133
HhaI GCGC 1 cut(s) 360
Hin1II CATG 9 cut(s) 113, 243, 322, 353, 404, 535, 1061, 1117, 1166
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HincII GTYRAC 1 cut(s) 1075
HindII GTYRAC 1 cut(s) 1075
HindIII AAGCTT 1 cut(s) 1037
HinfI GANTC 2 cut(s) 122, 340
HpaII CCGG 1 cut(s) 1133
HphI GGTGA 2 cut(s) 125, 349
Hpy166II GTNNAC 1 cut(s) 1075
Hpy188I TCNGA 4 cut(s) 37, 315, 688, 799
Hpy188III TCNNGA 6 cut(s) 119, 344, 732, 846, 921, 1133
Hpy8I GTNNAC 1 cut(s) 1075
Hpy99I CGWCG 1 cut(s) 1079
HpyAV CCTTC 5 cut(s) 32, 848, 858, 986, 1035
HpyCH4III ACNGT 2 cut(s) 32, 227
HpyCH4V TGCA 6 cut(s) 239, 457, 641, 724, 830, 1145
HpyF10VI GCNNNNNNNGC 5 cut(s) 355, 827, 1045, 1054, 1127
HpyF3I CTNAG 2 cut(s) 438, 1035
Hsp92II CATG 9 cut(s) 113, 243, 322, 353, 404, 535, 1061, 1117, 1166
HspAI GCGC 1 cut(s) 358
Kpn2I TCCGGA 1 cut(s) 1132
Kzo9I GATC 4 cut(s) 115, 430, 481, 1116
LguI GCTCTTC 1 cut(s) 1093
LmnI GCTCC 3 cut(s) 10, 766, 1135
Lsp1109I GCAGC 3 cut(s) 469, 653, 833
LweI GCATC 1 cut(s) 817
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 5 cut(s) 221, 362, 609, 748, 1030
MalI GATC 4 cut(s) 117, 432, 483, 1118
MboI GATC 4 cut(s) 115, 430, 481, 1116
MboII GAAGA 7 cut(s) 550, 641, 830, 956, 1107, 1110, 1121
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 763
MluCI AATT 8 cut(s) 171, 196, 395, 450, 524, 557, 694, 913
MlyI GAGTC 2 cut(s) 131, 349
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 6 cut(s) 133, 258, 816, 842, 879, 1047
Mph1103I ATGCAT 1 cut(s) 832
MroI TCCGGA 1 cut(s) 1132
MseI TTAA 5 cut(s) 503, 579, 668, 1179, 1192
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 1 cut(s) 1133
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 5 cut(s) 355, 827, 1045, 1054, 1127
NdeI CATATG 1 cut(s) 218
NdeII GATC 4 cut(s) 115, 430, 481, 1116
NlaIII CATG 9 cut(s) 113, 243, 322, 353, 404, 535, 1061, 1117, 1166
NlaIV GGNNCC 5 cut(s) 6, 245, 387, 762, 924
NmuCI GTSAC 2 cut(s) 221, 748
NsiI ATGCAT 1 cut(s) 832
NspI RCATGY 3 cut(s) 353, 1061, 1166
PaeR7I CTCGAG 1 cut(s) 344
PceI AGGCCT 1 cut(s) 868
PciI ACATGT 1 cut(s) 1162
PciSI GCTCTTC 1 cut(s) 1093
PflMI CCANNNNNTGG 2 cut(s) 752, 915
PkrI GCNGC 3 cut(s) 459, 643, 823
PleI GAGTC 2 cut(s) 130, 348
PpsI GAGTC 2 cut(s) 130, 348
PscI ACATGT 1 cut(s) 1162
PshAI GACNNNNGTC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 5 cut(s) 6, 245, 387, 762, 924
PspPI GGNCC 3 cut(s) 315, 923, 995
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 752
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 2 cut(s) 29, 1167
RsaNI GTAC 2 cut(s) 28, 1166
SalI GTCGAC 1 cut(s) 1073
SapI GCTCTTC 1 cut(s) 1093
SaqAI TTAA 5 cut(s) 503, 579, 668, 1179, 1192
SatI GCNGC 3 cut(s) 458, 642, 822
Sau3AI GATC 4 cut(s) 115, 430, 481, 1116
Sau96I GGNCC 3 cut(s) 315, 923, 995
SchI GAGTC 2 cut(s) 131, 349
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 763
SetI ASST 8 cut(s) 43, 180, 444, 826, 883, 956, 1027, 1041
SfaNI GCATC 1 cut(s) 817
SfcI CTRYAG 2 cut(s) 516, 639
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 2 cut(s) 315, 923
SlaI CTCGAG 1 cut(s) 344
SmlI CTYRAG 2 cut(s) 128, 344
SmoI CTYRAG 2 cut(s) 128, 344
Sse9I AATT 8 cut(s) 171, 196, 395, 450, 524, 557, 694, 913
SseBI AGGCCT 1 cut(s) 868
SsiI CCGC 1 cut(s) 82
SspMI CTAG 1 cut(s) 119
StuI AGGCCT 1 cut(s) 868
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 1083
TaaI ACNGT 2 cut(s) 32, 227
TaqI TCGA 4 cut(s) 345, 714, 808, 1074
TaqII GACCGA 1 cut(s) 956
TasI AATT 8 cut(s) 171, 196, 395, 450, 524, 557, 694, 913
TatI WGTACW 1 cut(s) 1165
Tru1I TTAA 5 cut(s) 503, 579, 668, 1179, 1192
Tru9I TTAA 5 cut(s) 503, 579, 668, 1179, 1192
TscAI CASTG 4 cut(s) 232, 643, 753, 906
TseFI GTSAC 2 cut(s) 221, 748
TseI GCWGC 3 cut(s) 457, 641, 821
Tsp45I GTSAC 2 cut(s) 221, 748
TspDTI ATGAA 5 cut(s) 81, 173, 303, 389, 403
TspRI CASTG 4 cut(s) 232, 643, 753, 906
Van91I CCANNNNNTGG 2 cut(s) 752, 915
VpaK11BI GGWCC 2 cut(s) 315, 923
XagI CCTNNNNNAGG 1 cut(s) 1002
XapI RAATTY 3 cut(s) 395, 557, 694
XbaI TCTAGA 1 cut(s) 118
XceI RCATGY 3 cut(s) 353, 1061, 1166
XcmI CCANNNNNNNNNTGG 1 cut(s) 753
XhoI CTCGAG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 1074
XspI CTAG 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.